Vitamin C Deficiency in a Food Insecure Patient: A Rare Case Report

Introduction: Scurvy is rarely seen in developed countries and is characterized by deficiency of vitamin C, which can lead to symptoms including wound impairment, bleeding manifestations, and loss of teeth. Case Description: We present a case of a 53-year-old male with a right knee hemarthrosis after a fall. The patient also noted progressively enlarging spontaneous hematomas, denying any recent trauma except for the fall to the knee. He denied family history of bleeding and clotting disorders and endorsed aspirin use in the setting of a prior stroke. He actively resided at a local shelter with limited means of transportation for routine medical care. Physical exam revealed large, firm hematomas on his bilateral lower extremities, poor dentition with spontaneous gum bleeding, and scattered petechiae on his back and feet. The patient’s diet consisted entirely of fast-food meals; he denied intake of fruits or vegetables for almost a full year. Nutritional deficiencies including ascorbic acid remained higher on the differential. Vitamin C levels returned \u3c 0.01 indicating severe deficiency (\u3c 0.02 is diagnostic). A bleeding disorder was ruled out based on other labs. He was treated with vitamin C, iron, thiamine, and folate supplementation. His hematomas improved significantly during the hospitalization. He was discharged on a multivitamin regimen and recommended outpatient physical therapy. Discussion: Scurvy is rare in the adult population of developed countries, and while easily treatable with an excellent prognosis, the consequences are deadly if missed. Clinicians should maintain a broad differential and consider social determinants of health in high-risk groups

Oxygen-blown gasification combined cycle: Carbon dioxide recovery, transport, and disposal

This project emphasizes CO2-capture technologies combined with integrated gasification combined-cycle (IGCC) power systems, CO2 transportation, and options for the long-term sequestration Of CO2. The intent is to quantify the CO2 budget, or an ``equivalent CO2`` budget, associated with each of the individual energy-cycle steps, in addition to process design capital and operating costs. The base case is a 458-MW (gross generation) IGCC system that uses an oxygen-blown Kellogg-Rust-Westinghouse (KRW) agglomerating fluidized-bed gasifier, bituminous coal feed, and low-pressure glycol sulfur removal, followed by Claus/SCOT treatment, to produce a saleable product. Mining, feed preparation, and conversion result in a net electric power production for the entire energy cycle of 411 MW, with a CO2 release rate of 0.801 kg/kV-Whe. For comparison, in two cases, the gasifier output was taken through water-gas shift and then to low-pressure glycol H2S recovery, followed by either low-pressure glycol or membrane CO2 recovery and then by a combustion turbine being fed a high-hydrogen-content fuel. Two additional cases employed chilled methanol for H2S recovery and a fuel cell as the topping cycle, with no shift stages. From the IGCC plant, a 500-km pipeline takes the CO2 to geological sequestering. For the optimal CO2 recovery case, the net electric power production was reduced by 37.6 MW from the base case, with a CO2 release rate of 0.277 kg/kWhe (when makeup power was considered). In a comparison of air-blown and oxygen-blown CO2-release base cases, the cost of electricity for the air-blown IGCC was 56.86 mills/kWh, while the cost for oxygen-blown IGCC was 58.29 mills/kWh. For the optimal cases employing glycol CO2 recovery, there was no clear advantage; the cost for air-blown IGCC was 95.48 mills/kWh, and the cost for the oxygen-blown IGCC was slightly lower, at 94.55 mills/kWh

Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.

Leymus cinereus and L. triticoides are large caespitose and rhizomatous perennial grasses, respectively. Previous studies detected quantitative trait loci (QTL) controlling rhizome spreading near the viviparous1 (vp1) gene markers on linkage groups LG3a and LG3b in two families, TTC1 and TTC2, derived from Leymus triticoides x Leymus cinereus hybrids. The wheat tiller inhibition gene (tin3) is located on Triticum monococcum chromosome 3 A(m)L near vp1. Triticeae group 3 is reportedly collinear with rice chromosome 1, which also contains the maize barren stalk1 and rice lax branching orthogene near vp1. However, previous studies lacked cross-species markers for comparative mapping and showed possible rearrangements of Leymus group 3 in wheat-Leymus racemosus chromosome addition lines. Here, we developed expressed sequence tag (EST) markers from Leymus tiller and rhizomes and mapped sequences aligned to rice chromosome 1. Thirty-eight of 44 informative markers detected loci on Leymus LG3a and LG3b that were collinear with homoeologous sequences on rice chromosome 1 and syntenous in homoeologous group 3 wheat-Leymus and wheat-Thinopyrum addition lines. A SCARECROW-like GRAS-family transcription factor candidate gene was identified in the Leymus EST library, which aligns to the Leymus chromosome group 3 growth habit QTL and a 324-kb rice chromosome 1 region thought to contain the wheat tin3 gene

Lighting energy efficiency opportunities at Cheyenne Mountain Air Station

CMAS is an intensive user of electricity for lighting because of its size, lack of daylight, and 24-hour operating schedule. Argonne National Laboratory recently conducted a lighting energy conservation evaluation at CMAS. The evaluation included inspection and characterization of existing lighting systems, analysis of energy-efficient retrofit options, and investigation of the environmental effects that these lighting system retrofits could have when they are ready to be disposed of as waste. Argonne devised three retrofit options for the existing lighting systems at various buildings: (1) minimal retrofit--limited fixture replacement; (2) moderate retrofit--more extensive fixture replacement and limited application of motion detectors; and (3) advanced retrofit--fixture replacement, reduction in the number of lamps, expansion of task lighting, and more extensive application of motion detectors. Argonne used data on electricity consumption to analyze the economic and energy effects of these three retrofit options. It performed a cost analysis for each retrofit option in terms of payback. The analysis showed that lighting retrofits result in savings because they reduce electricity consumption, cooling load, and maintenance costs. The payback period for all retrofit options was found to be less than 2 years, with the payback period decreasing for more aggressive retrofits. These short payback periods derived largely from the intensive (24-hours-per-day) use of electric lighting at the facility. Maintenance savings accounted for more than half of the annual energy-related savings under the minimal and moderate retrofit options and slightly less than half of these savings under the advanced retrofit option. Even if maintenance savings were excluded, the payback periods would still be impressive: about 4.4 years for the minimal retrofit option and 2 years for the advanced option. The local and regional environmental impacts of the three retrofit options were minimal

Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1

Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bacterium to degrade plant cell wall polysaccharides. Identifying the major enzyme types involved in plant cell wall degradation is essential for gaining a better understanding of the cellulolytic capabilities of this organism as well as highlighting potential enzymes for application in improvement of livestock nutrition and for conversion of cellulosic biomass to liquid fuels

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

Citation: Gulia-Nuss, M., Nuss, A. B., Meyer, J. M., Sonenshine, D. E., Roe, R. M., Waterhouse, R. M., . . . Hill, C. A. (2016). Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications, 7, 13. doi:10.1038/ncomms10507Additional Authors: Koren, S.;Hostetler, J. B.;Thiagarajan, M.;Joardar, V. S.;Hannick, L. I.;Bidwell, S.;Hammond, M. P.;Young, S.;Zeng, Q. D.;Abrudan, J. L.;Almeida, F. C.;Ayllon, N.;Bhide, K.;Bissinger, B. W.;Bonzon-Kulichenko, E.;Buckingham, S. D.;Caffrey, D. R.;Caimano, M. J.;Croset, V.;Driscoll, T.;Gilbert, D.;Gillespie, J. J.;Giraldo-Calderon, G. I.;Grabowski, J. M.;Jiang, D.;Khalil, S. M. S.;Kim, D.;Kocan, K. M.;Koci, J.;Kuhn, R. J.;Kurtti, T. J.;Lees, K.;Lang, E. G.;Kennedy, R. C.;Kwon, H.;Perera, R.;Qi, Y. M.;Radolf, J. D.;Sakamoto, J. M.;Sanchez-Gracia, A.;Severo, M. S.;Silverman, N.;Simo, L.;Tojo, M.;Tornador, C.;Van Zee, J. P.;Vazquez, J.;Vieira, F. G.;Villar, M.;Wespiser, A. R.;Yang, Y. L.;Zhu, J. W.;Arensburger, P.;Pietrantonio, P. V.;Barker, S. C.;Shao, R. F.;Zdobnov, E. M.;Hauser, F.;Grimmelikhuijzen, C. J. P.;Park, Y.;Rozas, J.;Benton, R.;Pedra, J. H. F.;Nelson, D. R.;Unger, M. F.;Tubio, J. M. C.;Tu, Z. J.;Robertson, H. M.;Shumway, M.;Sutton, G.;Wortman, J. R.;Lawson, D.;Wikel, S. K.;Nene, V. M.;Fraser, C. M.;Collins, F. H.;Birren, B.;Nelson, K. E.;Caler, E.;Hill, C. A.Ticks transmit more pathogens to humans and animals than any other arthropod. We describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors pathogens that cause Lyme disease, human granulocytic anaplasmosis, babesiosis and other diseases. The large genome reflects accumulation of repetitive DNA, new lineages of retro-transposons, and gene architecture patterns resembling ancient metazoans rather than pancrustaceans. Annotation of scaffolds representing similar to 57% of the genome, reveals 20,486 protein-coding genes and expansions of gene families associated with tick-host interactions. We report insights from genome analyses into parasitic processes unique to ticks, including host 'questing', prolonged feeding, cuticle synthesis, blood meal concentration, novel methods of haemoglobin digestion, haem detoxification, vitellogenesis and prolonged off-host survival. We identify proteins associated with the agent of human granulocytic anaplasmosis, an emerging disease, and the encephalitis-causing Langat virus, and a population structure correlated to life-history traits and transmission of the Lyme disease agent

Gene expression in developing watermelon fruit

<p>Abstract</p> <p>Background</p> <p>Cultivated watermelon form large fruits that are highly variable in size, shape, color, and content, yet have extremely narrow genetic diversity. Whereas a plethora of genes involved in cell wall metabolism, ethylene biosynthesis, fruit softening, and secondary metabolism during fruit development and ripening have been identified in other plant species, little is known of the genes involved in these processes in watermelon. A microarray and quantitative Real-Time PCR-based study was conducted in watermelon [<it>Citrullus lanatus </it>(Thunb.) Matsum. & Nakai var. lanatus] in order to elucidate the flow of events associated with fruit development and ripening in this species. RNA from three different maturation stages of watermelon fruits, as well as leaf, were collected from field grown plants during three consecutive years, and analyzed for gene expression using high-density photolithography microarrays and quantitative PCR.</p> <p>Results</p> <p>High-density photolithography arrays, composed of probes of 832 EST-unigenes from a subtracted, fruit development, cDNA library of watermelon were utilized to examine gene expression at three distinct time-points in watermelon fruit development. Analysis was performed with field-grown fruits over three consecutive growing seasons. Microarray analysis identified three hundred and thirty-five unique ESTs that are differentially regulated by at least two-fold in watermelon fruits during the early, ripening, or mature stage when compared to leaf. Of the 335 ESTs identified, 211 share significant homology with known gene products and 96 had no significant matches with any database accession. Of the modulated watermelon ESTs related to annotated genes, a significant number were found to be associated with or involved in the vascular system, carotenoid biosynthesis, transcriptional regulation, pathogen and stress response, and ethylene biosynthesis. Ethylene bioassays, performed with a closely related watermelon genotype with a similar phenotype, i.e. seeded, bright red flesh, dark green rind, etc., determined that ethylene levels were highest during the green fruit stage followed by a decrease during the white and pink fruit stages. Additionally, quantitative Real-Time PCR was used to validate modulation of 127 ESTs that were differentially expressed in developing and ripening fruits based on array analysis.</p> <p>Conclusion</p> <p>This study identified numerous ESTs with putative involvement in the watermelon fruit developmental and ripening process, in particular the involvement of the vascular system and ethylene. The production of ethylene during fruit development in watermelon gives further support to the role of ethylene in fruit development in non-climacteric fruits.</p

Development and annotation of perennial Triticeae ESTs and SSR markers.

Triticeae contains hundreds of species of both annual and perennial types. Although substantial genomic tools are available for annual Triticeae cereals such as wheat and barley, the perennial Triticeae lack sufficient genomic resources for genetic mapping or diversity research. To increase the amount of sequence information available in the perennial Triticeae, three expressed sequence tag (EST) libraries were developed and annotated for Pseudoroegneria spicata, a mixture of both Elymus wawawaiensis and E. lanceolatus, and a Leymus cinereus x L. triticoides interspecific hybrid. The ESTs were combined into unigene sets of 8 780 unigenes for P. spicata, 11 281 unigenes for Leymus, and 7 212 unigenes for Elymus. Unigenes were annotated based on putative orthology to genes from rice, wheat, barley, other Poaceae, Arabidopsis, and the non-redundant database of the NCBI. Simple sequence repeat (SSR) markers were developed, tested for amplification and polymorphism, and aligned to the rice genome. Leymus EST markers homologous to rice chromosome 2 genes were syntenous on Leymus homeologous groups 6a and 6b (previously 1b), demonstrating promise for in silico comparative mapping. All ESTs and SSR markers are available on an EST information management and annotation database (http://titan.biotec.uiuc.edu/triticeae/)

The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

BACKGROUND: Songbirds hold great promise for biomedical, environmental and evolutionary research. A complete draft sequence of the zebra finch genome is imminent, yet a need remains for application of genomic resources within a research community traditionally focused on ethology and neurobiological methods. In response, we developed a core set of genomic tools and a novel collaborative strategy to probe gene expression in diverse songbird species and natural contexts. RESULTS: We end-sequenced cDNAs from zebra finch brain and incorporated additional sequences from community sources into a database of 86,784 high quality reads. These assembled into 31,658 non-redundant contigs and singletons, which we annotated via BLAST search of chicken and human databases. The results are publicly available in the ESTIMA:Songbird database. We produced a spotted cDNA microarray with 20,160 addresses representing 17,214 non-redundant products of an estimated 11,500–15,000 genes, validating it by analysis of immediate-early gene (zenk) gene activation following song exposure and by demonstrating effective cross hybridization to genomic DNAs of other songbird species in the Passerida Parvorder. Our assembly was also used in the design of the "Lund-zfa" Affymetrix array representing ~22,000 non-redundant sequences. When the two arrays were hybridized to cDNAs from the same set of male and female zebra finch brain samples, both arrays detected a common set of regulated transcripts with a Pearson correlation coefficient of 0.895. To stimulate use of these resources by the songbird research community and to maintain consistent technical standards, we devised a "Community Collaboration" mechanism whereby individual birdsong researchers develop experiments and provide tissues, but a single individual in the community is responsible for all RNA extractions, labelling and microarray hybridizations. CONCLUSION: Immediately, these results set the foundation for a coordinated set of 25 planned experiments by 16 research groups probing fundamental links between genome, brain, evolution and behavior in songbirds. Energetic application of genomic resources to research using songbirds should help illuminate how complex neural and behavioral traits emerge and evolve

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat

Among abiotic stressors, drought is a major factor responsible for dramatic yield loss in agriculture. In order to reveal differences in global expression profiles of drought tolerant and sensitive wild emmer wheat genotypes, a previously deployed shock-like dehydration process was utilized to compare transcriptomes at two time points in root and leaf tissues using the Affymetrix GeneChip(R) Wheat Genome Array hybridization. The comparison of transcriptomes reveal several unique genes or expression patterns such as differential usage of IP(3)-dependent signal transduction pathways, ethylene- and abscisic acid (ABA)-dependent signaling, and preferential or faster induction of ABA-dependent transcription factors by the tolerant genotype that distinguish contrasting genotypes indicative of distinctive stress response pathways. The data also show that wild emmer wheat is capable of engaging known drought stress responsive mechanisms. The global comparison of transcriptomes in the absence of and after dehydration underlined the gene networks especially in root tissues that may have been lost in the selection processes generating modern bread wheats