Many-body theory of the quantum mirage

In recent scanning tunneling microscopy experiments, confinement in an elliptical corral has been used to project the Kondo effect from one focus to the other one. I solve the Anderson model at arbitrary temperatures, for an impurity hybridized with eigenstates of an elliptical corral, each of which has a resonant level width delta. This width is crucial. If delta < 20 meV, the Kondo peak disappears, while if delta > 80 meV, the mirage disappears. For particular conditions, a stronger mirage with the impurity out of the foci is predicted.Comment: 5 pages, 5 figures. Some clarifications of the method added, and a reference included to show that the hybridization of the impurity with bulk states can be neglecte

Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

The diurnal cycle strongly influences many plant metabolic and physiological processes. Arabidopsis thaliana rosettes were harvested six times during 12-h-light/12-h-dark treatments to investigate changes in gene expression using ATH1 arrays. Diagnostic gene sets were identified from published or in-house expression profiles of the response to light, sugar, nitrogen, and water deficit in seedlings and 4 h of darkness or illumination at ambient or compensation point [CO2]. Many sugar-responsive genes showed large diurnal expression changes, whose timing matched that of the diurnal changes of sugars. A set of circadian-regulated genes also showed large diurnal changes in expression. Comparison of published results from a free-running cycle with the diurnal changes in Columbia-0 (Col-0) and the starchless phosphoglucomutase (pgm) mutant indicated that sugars modify the expression of up to half of the clock-regulated genes. Principle component analysis identified genes that make large contributions to diurnal changes and confirmed that sugar and circadian regulation are the major inputs in Col-0 but that sugars dominate the response in pgm. Most of the changes in pgm are triggered by low sugar levels during the night rather than high levels in the light, highlighting the importance of responses to low sugar in diurnal gene regulation. We identified a set of candidate regulatory genes that show robust responses to alterations in sugar levels and change markedly during the diurnal cycle

Microscopic theory for quantum mirages in quantum corrals

Scanning tunneling microscopy permits to image the Kondo resonance of a single magnetic atom adsorbed on a metallic surface. When the magnetic impurity is placed at the focus of an elliptical quantum corral, a Kondo resonance has been recently observed both on top of the impurity and on top of the focus where no magnetic impurity is present. This projection of the Kondo resonance to a remote point on the surface is referred to as quantum mirage. We present a quantum mechanical theory for the quantum mirage inside an ideal quantum corral and predict that the mirage will occur in corrals with shapes other than elliptical

Interaction between Kondo impurities in a quantum corral

We calculate the spectral densities for two impurities inside an elliptical quantum corral using exact diagonalization in the relevant Hilbert subspace and embedding into the rest of the system. For one impurity, the space and energy dependence of the change in differential conductance $\Delta = dI/dV$ observed in the quantum mirage experiment is reproduced. In presence of another impurity, $\Delta = dI/dV$ is very sensitive to the hybridization between impurity and bulk. The impurities are correlated ferromagnetically between them. A hopping $\gtrsim 0.15$ eV between impurities destroy the Kondo resonance.Comment: 4 pages, 4 figure

The Kondo Box: A Magnetic Impurity in an Ultrasmall Metallic Grain

We study the Kondo effect generated by a single magnetic impurity embedded in an ultrasmall metallic grain, to be called a ``Kondo box''. We find that the Kondo resonance is strongly affected when the mean level spacing in the grain becomes larger than the Kondo temperature, in a way that depends on the parity of the number of electrons on the grain. We show that the single-electron tunneling conductance through such a grain features Kondo-induced Fano-type resonances of measurable size, with an anomalous dependence on temperature and level spacing.Comment: 4 Latex pages, 4 figures, submitted to Phys. Rev. Let

Mesoscopic Kondo Effect in an Aharonov-Bohm Ring

An interacting quantum dot inserted in a mesoscopic ring is investigated. A variational ansatz is employed to describe the ground state of the system in the presence of the Aharonov-Bohm flux. It is shown that, for even number of electrons with the energy level spacing smaller than the Kondo temperature, the persistent current has a value similar to that of a perfect ring with the same radius. On the other hand, for a ring with odd number electrons, the persistent current is found to be strongly suppressed compared to that of an ideal ring, which implies the suppression of the Kondo-resonant transmission. Various aspects of the Kondo-assisted persistent current are discussed.Comment: 4 pages Revtex, 4 Postscript figures, final version to appear in Phys. Rev. Lett. 85, No.26 (Dec. 25, 2000

Kondo screening cloud effects in mesoscopic devices

We study how finite size effects may appear when a quantum dot in the Kondo Coulomb blockade regime is embedded into a mesoscopic device with finite wires. These finite size effects appear when the size of the mesoscopic device containing the quantum dot is of the order of the size of Kondo cloud and affect all thermodynamic and transport properties of the Kondo quantum dot. We also generalize our results to the experimentally relevant case where the wires contain several transverse modes/channels. Our results are based on perturbation theory, Fermi liquid theory and slave boson mean field theory.Comment: 19 pages, 9 figure

Kondo Resonance in a Mesoscopic Ring Coupled to a Quantum Dot: Exact Results for the Aharonov-Bohm/Casher Effects

We study the persistent currents induced by both the Aharonov-Bohm and Aharonov-Casher effects in a one-dimensional mesoscopic ring coupled to a side-branch quantum dot at Kondo resonance. For privileged values of the Aharonov-Bohm-Casher fluxes, the problem can be mapped onto an integrable model, exactly solvable by a Bethe ansatz. In the case of a pure magnetic Aharonov-Bohm flux, we find that the presence of the quantum dot has no effect on the persistent current. In contrast, the Kondo resonance interferes with the spin-dependent Aharonov-Casher effect to induce a current which, in the strong-coupling limit, is independent of the number of electrons in the ring.Comment: Replaced with published version; 5 page

GeneBins: a database for classifying gene expression data, with application to plant genome arrays

BACKGROUND: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. RESULTS: We developed a bioinformatics system to assign the probe set sequences of any organism to a hierarchical functional classification modelled on KEGG ontology. The GeneBins database currently supports the functional classification of expression data from four Affymetrix arrays; Arabidopsis thaliana, Oryza sativa, Glycine max and Medicago truncatula. An online analysis tool to identify relevant functions is also provided. CONCLUSION: GeneBins provides resources to interpret gene expression results from microarray experiments. It is available a