Equilibrium Clusters in Concentrated Lysozyme Protein Solutions

We have studied the structure of salt-free lysozyme at 293 K and pH 7.8 using molecular simulations and experimental SAXS effective potentials between proteins at three volume fractions, 0.012, 0.033, and 0.12. We found that the structure of lysozyme near physiological conditions strongly depends on the volume fraction of proteins. The studied lysozyme solutions are dominated by monomers only for <0.012; for the strong dilution 70% of proteins are in a form of monomers. For 0.033 only 20% of proteins do not belong to a cluster. The clusters are mainly elongated. For 0.12 almost no individual particles exits, and branched, irregular clusters of large extent appear. Our simulation study provides new insight into the formation of equilibrium clusters in charged protein solutions near physiological conditions

Influence of activated carbon surface oxygen functionalities on SO2 physisorption – Simulation and experiment

The influence of the gradual oxidation of carbons on SO2 physisorption was studied, by comparison of experimental and simulated SO2 adsorption isotherms. The results confirmed a significant impact of surface groups on the SO2 adsorption. The simulations also revealed a similar, to that observed experimentally, effect of the increase in the percentage of the smallest micropores on adsorption isotherms. The isotherms were analysed using the CMMS model. The conclusion is that this model seems to be a good and sensitive tool for studying SO2 physisorption mechanism since a very good qualitative agreement between the experimental and simulated data was observed

CO 2 - reinforced nanoporous carbon potential energy field during CO 2 /CH 4 mixture adsorption. A comprehensive volumetric, in-situ IR, and thermodynamic insight

CO2/CH4 mixture adsorption is very important in different fields like, for example, a biogas purification. Using a comprehensive experimental approach based on volumetric and in-situ FTIR measurements the new results of CO2/CH4 mixture separation on a carbon film are reported. The application of this experimental approach makes it possible to elaborate the effect of enhanced CH4 adsorption at low CO2 concentrations in the adsorbed phase. The presence of this effect is proved experimentally for the first time. This effect is responsible for the deviation of Ideal Adsorption Solution model from the experimental data. To discuss separation mechanism the activity coefficients at constant spreading pressure values are calculated. At low spreading pressure, CO2 activity coefficient is strongly disturbed by the presence of CH4 molecules in the surface mixture. In contrast, the CH4 activity coefficients are remarkably influenced by adsorbed CO2 only at higher CO2 surface concentrations. The obtained activity coefficients are successfully described by a new modification of the Redlich-Kister equation. This modification takes into account the interaction between binary mixture components and an adsorbent. Finally we show that the studied carbon possesses very good CO2/CH4 mixture separation properties, comparable to those reported for other adsorbents

Synergetic effect of carbon nanopore size and surface oxidation on CO2 capture from CO2/CH4 mixtures

We have studied the synergetic effect of confinement (carbon nanopore size) and surface chemistry (the number of carbonyl groups) on CO2 capture from its mixtures with CH4 at typical operating conditions for industrial adsorptive separation (298 K and compressed CO2CH4 mixtures). Although both confinement and surface oxidation have an impact on the efficiency of CO2/CH4 adsorptive separation at thermodynamics equilibrium, we show that surface functionalization is the most important factor in designing an efficient adsorbent for CO2 capture. Systematic Monte Carlo simulations revealed that adsorption of CH4 either pure or mixed with CO2 on oxidized nanoporous carbons is only slightly increased by the presence of functional groups (surface dipoles). In contrast, adsorption of CO2 is very sensitive to the number of carbonyl groups, which can be examined by a strong electric quadrupolar moment of CO2. Interestingly, the adsorbed amount of CH4 is strongly affected by the presence of the co-adsorbed CO2. In contrast, the CO2 uptake does not depend on the molar ratio of CH4 in the bulk mixture. The optimal carbonaceous porous adsorbent used for CO2 capture near ambient conditions should consist of narrow carbon nanopores with oxidized pore walls. Furthermore, the equilibrium separation factor was the greatest for CO2/CH4 mixtures with a low CO2 concentration. The maximum equilibrium separation factor of CO2 over CH4 of ∼18–20 is theoretically predicted for strongly oxidized nanoporous carbons. Our findings call for a review of the standard uncharged model of carbonaceous materials used for the modeling of the adsorption separation processes of gas mixtures containing CO2 (and other molecules with strong electric quadrupolar moment or dipole moment)

What is the value of water contact angle on silicon?

Silicon is a widely applied material and the wetting of silicon surface is an important phenomenon. However, contradictions in the literature appear considering the value of the water contact angle (WCA). The purpose of this study is to present a holistic experimental and theoretical approach to the WCA determination. To do this, we checked the chemical composition of the silicon (1,0,0) surface by using the X-ray photoelectron spectroscopy (XPS) method, and next this surface was purified using different cleaning methods. As it was proved that airborne hydrocarbons change a solid wetting properties the WCA values were measured in hydrocarbons atmosphere. Next, molecular dynamics (MD) simulations were performed to determine the mechanism of wetting in this atmosphere and to propose the force field parameters for silica wetting simulation. It is concluded that the best method of surface cleaning is the solvent-reinforced de Gennes method, and the WCA value of silicon covered by SiO2 layer is equal to 20.7° (at room temperature). MD simulation results show that the mechanism of pure silicon wetting is similar to that reported for graphene, and the mechanism of silicon covered by SiO2 layer wetting is similar to this observed recently for a MOF

The influence of the carbon surface chemical composition on Dubinin-Astakhov equation parameters calculated from SF(6) adsorption data-grand canonical Monte Carlo simulation

Using grand canonical Monte Carlo simulation we show, for the first time, the influence of the carbon porosity and surface oxidation on the parameters of the Dubinin-Astakhov (DA) adsorption isotherm equation. We conclude that upon carbon surface oxidation, the adsorption decreases for all carbons studied. Moreover, the parameters of the DA model depend on the number of surface oxygen groups. That is why in the case of carbons containing surface polar groups, SF(6) adsorption isotherm data cannot be used for characterization of the porosity

Revisiting wetting, freezing, and evaporation mechanisms of water on copper

Wetting of metal surfaces plays an important role in fuel cells, corrosion science, and heat-transfer devices. It has been recently stipulated that Cu surface is hydrophobic. In order to address this issue we use high purity (1 1 1) Cu prepared without oxygen, and resistant to oxidation. Using the modern Fringe Projection Phase-Shifting method of surface roughness determination, together with a new cell allowing the vacuum and thermal desorption of samples, we define the relation between the copper surface roughness and water contact angle (WCA). Next by a simple extrapolation, we determine the WCA for the perfectly smooth copper surface (WCA = 34°). Additionally, the kinetics of airborne hydrocarbons adsorption on copper was measured. It is shown for the first time that the presence of surface hydrocarbons strongly affects not only WCA, but also water droplet evaporation and the temperature of water droplet freezing. The different behavior and features of the surfaces were observed once the atmosphere of the experiment was changed from argon to air. The evaporation results are well described by the theoretical framework proposed by Semenov, and the freezing process by the dynamic growth angle model

Applicability of molecular simulations for modelling the adsorption of the greenhouse gas CF4 on carbons

Tetrafluoromethane, CF4, is powerful greenhouse gas, and the possibility of storing it in microporous carbon has been widely studied. In this paper we show, for the first time, that the results of molecular simulations can be very helpful in the study of CF4 adsorption. Moreover, experimental data fit to the results collected from simulations. We explain the meaning of the empirical parameters of the supercritical Dubinin–Astakhov model proposed by Ozawa and finally the meaning of the parameter k of the empirical relation proposed by Amankwah and Schwarz

Stability of coordination polymers in water: state of the art and towards a methodology for nonporous materials

A mini review on the study concerning water stability of coordination polymers (CPs) is presented. Next, following the procedure proposed recently by Gelfand and Shimizu (Dalton Trans 45:3668-3678, 2016) the stability of three cysteine (Cys)containing CPs is investigated. The stability of studied CPs decreases in the order: Zn(Cys)(2)>Mg(Cys)(2)>Ca(Cys)(2) H2O. For the latternever reported before, the structure is additionally determined and it is proved that water is located in the first coordination sphere. It is shown that for nonporous CPs, in contrast to the porous ones, the immersion in water at 20 degrees C is more drastic for studied solids than the harsh humid conditions (80 degrees C at 90% R.H.). Finally all materials are assigned to the hydrolytic stability groups and it is concluded that the stability of studied CPs correlates well with the standard reduction potentials. This leads to the conclusion that the application of more inert metal as a node causes larger stability of studied CPs