Spatio-temporal variation in the phytobenthos and phytoplankton community structure and composition of particulate matter along a river-estuary continuum assessed using microscopic and stable isotope analyses

Phytoplankton and phytobenthos communities play an important role in lotic systems as primary producers providing essential biomolecules to higher trophic oganisms and are important indicators for environmental or ecological change. In this thesis, field studies (observational and experimental) along a river–estuary continuum were conducted to assess the spatio-temporal variation and development of phytobenthos and phytoplankton communities using a combination of stable isotope and community analyses in a temperate southern African system across four study periods: September (early spring) and November/December (late spring) 2012, and February (summer) and May/June (winter) 2013. Additionally, the sources and composition of the particulate organic matter were also analysed using stable isotope (δ15N and δ13C) analysis. The effects of substrate type and flood occurrence were assessed through experimental studies at an up- and downstream site of the river after a major flood event that occurred between October and November 2012. Common household tiles were used as artificial substrates to study the development/succession of phytobenthos communities after the flood disturbance. Distinct diatom communities were observed between upstream and downstream sites and at each site, community structure changed with time indicating succession. In addition to recording diatom characteristics on three natural substrates, namely; macrophytes, rocks and sediment, artificial substrates observations were also made on three different types of artificial substrates, namely; brick, brown clay and grey clay tiles. The natural (species richness 78) and artificial substrates (sp. richness 93) had different communities with the latter having greater species richness. Common phytobenthos taxa were not restricted to a single substrate but preference was generally high for the artificial substrates, especially brown tiles (mean sp. richness 47). Results of the redundancy analysis (RDA) analysis indicated that ammonium, conductivity, total dissolved solids, salinity, pH, oxygen reduction potential, phosphate and water depth were the major determinants of the phytobenthos composition at the two sites. The spatio–temporal variation of phytoplankton and phytobenthos communities and allochthonous organic matter along the river–estuary continuum was assessed at 8 sites using a combination of community and stable isotope analyses. A total of 178 species belonging to 78 genera were recorded with diatoms being predominant, accounting for 81.9 % of the total abundance. The total chl-a concentration along the river-estuary continuum increased from spring to a high in summer before decreasing to a low in winter. Periphyton communities were observed to be significantly different across sites (p 50 %) in the upper to middle reaches (river), but low (< 20 %) in the lower reaches (estuary). The current investigation represents the first attempt to assess the validity of the River Continuum Concept (RCC) in a southern African temperate river. The phytoplankton and phytobenthos communities, and chl-a concentration followed a trend similar to that proposed for the river continuum concept (RCC). The middle reaches based on the phytobenthos or phytoplankton communities and chl-a concentrations which were employed as proxies for primary production, were the most productive, while the upper reaches were the least primary productive. The evaluation of organic matter contributions to the SPM and detritus along the river–estuary continuum provided a baseline assessment of the nature and sources of potential food for consumers inhabiting different locations during different times of the year. Incorporating such spatio-temporal variations in SPM and detritus into food web studies will improve our understanding of the flow of carbon through aquatic systems

Determinants of participation in rural non-farm economy in Zvimba District, Zimbabwe

The capacity of agriculture to provide sustainable livelihood opportunities is exceeded by the rural populations of developing countries, and with limited opportunities available in urban centres, the rural non-farm economy (RNFE) becomes pivotal in improving rural livelihoods. Within an empowerment agenda, it is important for policy makers to understand why households enter into the RNFE. We investigated participation in the RNFE of farm worker livelihoods along with the motivation for participation in RNF employment. Moreover, we sought to determine the key barriers and enablers to the adoption of high return strategies in RNFE activities by rural farm workers in Zimbabwe. Quantitative household surveys and qualitative focus group discussions were used to investigate levels of household dependency, education and skills, income accumulation and enterprising, expenditure and household assets. Our results showed that the primary motivation for entry into the RNFE was distress-pushed diversification. Our study found that market dynamics, limited skills, education level, and lack of capital are the paralysing factors towards significant income returns from RNFE for households. This information is critical for policy development for sustainable rural livelihoods, especially for rural farm workers who constitute the most vulnerable of the entire African rural population

Diatom-based water quality monitoring in southern Africa: challenges and future prospects

Diatoms are of significant ecological importance in aquatic ecosystems, which stems from their dynamic position at the base of the trophic web as primary producers. Because diatom communities have specific environmental requirements and respond rapidly to changes in environmental conditions they are often employed as a cost-effective method to assess anthropogenic impacts and health statuses of aquatic ecosystems, particularly in Europe and North America. The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past research pertaining to African diatom taxonomy should be made readily accessible to all through electronic media for use as a reference point. Moreover, following the same approach as for macroinvertebrate biomonitoring, African and other developing countries can resort to intermediate diatom taxonomy (i.e. genus), which is easier, less time-consuming and requires less-skilled personnel. While the lack of capacity and baseline information on diatom community composition and ecological requirements represent significant hurdles, diatom biomonitoring potentially holds much promise for understanding the ecological functioning and management of aquatic ecosystems in southern Africa. The application of diatom-based water quality assessment protocols has direct and immediate value for use as an ‘added-value’ assessment tool in addition to the use of macroinvertebrates and fish indices as these can indicate anthropogenically impacted and pristine sites

Evidence of spatial and temporal changes in sources of organic matter in estuarine sediments

We investigated spatial and temporal changes in sources of organic matter in sediments within an estuarine environment in South Africa using fatty acids (FA) and stable isotopes (SI). Samples of sediments and sources of organic matter [i.e., particulate organic matter, microphytobenthos (MPB), macrophytes, salt marsh plants, and terrestrial leaves] were collected during spring and summer 2012, and autumn and winter 2013 from the upper, middle, and lower reaches. A Stable Isotope Analysis in R (SIAR) mixing model was used to identify the organic matter sources contributing to sediments in each estuarine reach and season. We found that diatom-associated fatty acids (20:5ω3; 16:1ω7) increased toward the upper reaches, while long-chained terrigenous fatty acids (24:0) tended to be more prevalent in lower reach sediments. In support of the FA results, the SI mixing model showed a substantial contribution from the marsh grass Spartina maritima in sediments of the lower estuary during periods of low-freshwater discharge (autumn and winter), while MPB was the main component in sediments from the upper and middle reaches during all seasons. Our results have implications for evaluating estuarine food webs since the spatial and seasonal variability in the organic matter deposited can influence estuarine community structure

Assessment of water quality based on diatom indices in a small temperate river system, Kowie River, South Africa

This study aimed to assess the impact of land use patterns on water quality and benthic diatom community structure and to test the applicability of diatom indices developed in other regions of the world to a small temperate southern African river system. Sampling was conducted at eight study sites along the length of the river on four separate occasions. Multivariate data analyses were performed on the diatom community dataset to specify the main gradients of floristic variation and to detect and visualize similarities in diatom samples in relation to land-use patterns within the catchment. One hundred and twelve (112) diatom species belonging to 36 genera were recorded during the study. Canonical correspondence analysis (CCA) demonstrated that variations in the benthic diatom community structure were best explained by ammonium, nitrate, conductivity, pH, temperature, resistivity and water flow. OMNIDIA was used for calculation of selected diatom water quality indices. A number of the indices, e.g., the trophic diatom index (TDI), eutrophication/pollution index and biological index of water quality (BIWQ), either under- or over-estimated the water quality of the system. With few exceptions, there were no significant correlations (p> 0.05) between the diatom indices’ values and the nutrient variables. The absence of any significant correlations between the diatom indices’ values and selected physico-chemical variables suggests that indices developed in other regions of the world may not be suitable for temperate southern African rivers

Phytoplankton community diversity along a river-estuary continuum

In this paper we examine the aspects of phytoplankton communities along a riverine-estuarine continuum in the Kowie system, Eastern Cape (South Africa). This study aims to relate the phytoplankton population community structure to physicochemical parameters and estimate the different chlorophyll-a concentrations for the Kowie system. Eight sampling sites along a 70 km reach of the Kowie system were sampled over a one-year period. One hundred and seventy-eight species belonging to 78 genera were recorded within the riverine-estuarine continuum. Diatoms were predominant, accounting for 81.9% of the total abundance. The estuary had 98 species (55 genera) recorded whereas the river had 141 species (67 genera). Using a two-way analysis of variance (ANOVA), species richness was found to differ significantly amongst seasons. The chl-a concentration along the estuarine-riverine continuum increased from spring to a high in summer (river mean = 7.9 mg m -3 and estuary mean = 3.3 mg m -3 ) before decreasing to a low in winter. Kruskal Wallis ANOVA showed significant differences among chl-a concentration with seasons and sites. Redundancy analysis identified five factors salinity, water depth, aerial cover, nitrates and ammonia that were significant (p is less than 0.05) in affecting phytoplankton variation. The relatively small study indicates the need for further monitoring to gain a better understanding of Kowie system phytoplankton

Thermal limits and preferences of large branchiopods (Branchiopoda: Anostraca and Spinicaudata) from temporary wetland arid zone systems

Highlights: • Thermal biology of rock-pool and pan specialist branchiopods were contrasted. • Wetland type was not a good predictor of branchiopod thermal preference/limits. • Spinicaudatans preferring higher temperatures than anostracans. • Spinicaudatans were more tolerant of high temperatures than anostracans. • Anostracans may be more susceptible to projected climatic warming. Abstract: Large branchiopods are specialist crustaceans adapted for life in temporary, thermally dynamic wetland ecosystems. Certain large branchiopod species are, however, restricted to specific temporary wetland types, exemplified by their physico-chemical and hydroperiod characteristics. Here, we contrasted the thermal preference and critical thermal maxima (CTmax) and minima (CTmin) of southern African anostracans and spinicaudatans found exclusively in either temporary rock-pool or pan wetland types. We hypothesized that environment of origin would be a good predictor of thermal preference and critical thermal limits. To test this, Branchiopodopsis tridens (Anostraca) and Leptestheria brevirostris (Spinicaudata) were collected from rock-pool habitats, while Streptocephalus cafer (Anostraca) and a Gondwanalimnadia sp. (Spinicaudata) were collected from pan habitats. In contrast to our hypothesis, taxonomic relatedness was a better predictor of CTmax and temperature preference than environment of origin. Spinicaudatans were significantly more tolerant of high temperatures than anostracans, with L. brevirostris and Gondwanalimnadia sp. median CTmax values of 45.1 °C and 44.1 °C, respectively, followed by S. cafer (42.8 °C) and B. tridens (41.4 °C). Neither environment or taxonomic relatedness were good predictors of CTmin trends, with B. tridens (0.9 °C) and Gondwanalimnadia sp. (2.1 °C) having the lowest median CTmin values, followed by L. brevirostris (3.4 °C) and S. cafer (3.6 °C). On the contrary, temperature preferences differed according to taxa, with spinicaudatans significantly preferring higher temperatures than anostracans. Leptestheria brevirostris and Gondwanalimnadia sp. both spent most time at temperatures 30–32 °C, S. cafer at 18–20 °C and B. tridens at 21–23 °C. Constrained thermal traits reported here suggest that the studied anostracans might be more susceptible to projected climatic warming than the spinicaudatans, irrespective of habitat type, however, these taxa may also compensate through phenotypic plasticity

Effects of urbanisation and a wastewater treatment plant on microplastic densities along a subtropical river system

Global freshwaters are increasingly threatened by pollutants emanating from human activities around watersheds. Microplastic pollution is an increasing problem for rivers worldwide, potentially threatening ecological integrity, ecosystem services and human health. We present quantifications and characterisations of sediment microplastic pollution in a subtropical river system in southern Africa, and relate distributions to wastewater treatment works, abiotic variables and urban environments. We additionally apply several diversity indices to decipher how microplastic types differ across the river system seasonally. Over two thousand microplastic particles were found across five sites and three seasons in the river system, comprising microbeads of various colours and microfibres. Microplastic concentrations were highest and most diverse in the hot–wet (mean range 76.0 ± 10.0–285.5 ± 44.5 microplastic kg−1) season as compared to the cool–dry (16.5 ± 4.5–27.0 ± 5.0 microplastic kg−1) and hot–dry (13.0 ± 4.0–29.0 ± 10.0 microplastic kg−1) seasons, and were mostly dominated by microfibres. However, no clear patterns were found in relation to wastewater treatment operations spatially, or in relation to abiotic variables in the river system. This study therefore finds a diverse range of microplastic types widely distributed in the river system that differ across seasons. Our results provide important, novel insights into plastic pollution in an understudied area of the Global South, and point to extensive pollution from sources outside of wastewater treatment works

Metal Distribution and Sediment Quality Variation across Sediment Depths of a Subtropical Ramsar Declared Wetland

The study of wetlands is particularly important as these systems act as natural water purifiers and thus can act as sinks for contaminated particles. Wetland sediments are important as they provide an indication of potential contamination across temporal and spatial scales. The current study aimed to investigate the distributions of selected metals and nutrients in different sites in relation to sediment depth, and identify relationships among sediment metals. Significant differences in nutrient (i.e., N, P) and metal (i.e., K, Mg, Na, Fe, Cu, B) concentrations were found across study sites, whereas nutrients (i.e., N, P) and metals (i.e., Ca, Mg, Fe, Cu, Zn) were significantly different with sediment depths. When compared against Canadian sediment standards, most of the assessed metals were within the “no effect” level across the different sites and depths. The K, Ca, and Mg concentration showed extreme contamination across all sites and depths. The enrichment factor values for K, Ca, and Mg showed extremely high enrichment levels for all sites and sediment depths. The Na, Mn, Fe, Cu, Zn, and B concentration showed mostly background enrichment levels. All sediments across the different sites and sediment depths indicated deterioration of sediment quality. Pearson correlations suggest that most metals might have originated in a similar source as that of Mn and B, owing to a lack of significant differences. These results provide baseline information for the general management of the Nylsvley Wetland in relation to sediment metal pollution. The specific sources of metal contaminants also require further elucidation to further inform management efforts