Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

Activities of rhizosphere microbes are key to the functioning of terrestrial ecosystems. It is commonly believed that bacteria are the major consumers of root exudates and that the role of fungi in the rhizosphere is mostly limited to plant-associated taxa, such as mycorrhizal fungi, pathogens and endophytes, whereas less is known about the role of saprotrophs. In order to test the hypothesis that the role of saprotrophic fungi in rhizosphere processes increases with increased time after abandonment from agriculture, we determined the composition of fungi that are active in the rhizosphere along a chronosequence of ex-arable fields in the Netherlands. Intact soil cores were collected from nine fields that represent three stages of land abandonment and pulse labeled with 13 CO 2. The fungal contribution to metabolization of plant-derived carbon was evaluated using phospholipid analysis combined with stable isotope probing (SIP), whereas fungal diversity was analyzed using DNA-SIP combined with 454-sequencing. We show that in recently abandoned fields most of the root-derived 13 C was taken up by bacteria but that in long-term abandoned fields most of the root-derived 13 C was found in fungal biomass. Furthermore, the composition of the active functional fungal community changed from one composed of fast-growing and pathogenic fungal species to one consisting of beneficial and slower-growing fungal species, which may have essential consequences for the carbon flow through the soil food web and consequently nutrient cycling and plant succession

Green Manure Addition to Soil Increases Grain Zinc Concentration in Bread Wheat

Zinc (Zn) deficiency is a major problem for many people living on wheat-based diets. Here, we explored whether addition of green manure of red clover and sunflower to a calcareous soil or inoculating a non-indigenous arbuscular mycorrhizal fungal (AMF) strain may increase grain Zn concentration in bread wheat. For this purpose we performed a multifactorial pot experiment, in which the effects of two green manures (red clover, sunflower), ZnSO4 application, soil γ-irradiation (elimination of naturally occurring AMF), and AMF inoculation were tested. Both green manures were labeled with 65Zn radiotracer to record the Zn recoveries in the aboveground plant biomass. Application of ZnSO4 fertilizer increased grain Zn concentration from 20 to 39 mg Zn kg-1 and sole addition of green manure of sunflower to soil raised grain Zn concentration to 31 mg Zn kg-1. Adding the two together to soil increased grain Zn concentration even further to 54 mg Zn kg-1. Mixing green manure of sunflower to soil mobilized additional 48 µg Zn (kg soil)-1 for transfer to the aboveground plant biomass, compared to the total of 132 µg Zn (kg soil)-1 taken up from plain soil when neither green manure nor ZnSO4 were applied. Green manure amendments to soil also raised the DTPA-extractable Zn in soil. Inoculating a non-indigenous AMF did not increase plant Zn uptake. The study thus showed that organic matter amendments to soil can contribute to a better utilization of naturally stocked soil micronutrients, and thereby reduce any need for major external inputs

Anthropogenic charcoal-rich soils of the XIX century reveal that biochar leads to enhanced fertility and fodder quality of alpine grasslands

International audienceSoil incorporation of charcoal (biochar) has been suggested as practice to sequester carbon, improve soil properties and crop yields but most studies have been done in the short term. Old anthropogenic charcoal-rich soils in the Alps enable to explore the long-term impact of charcoal addition to alpine grassland on seed germination, fertility and fodder nutritive value. A germination test and a growth experiment in pots with Festuca nigrescens Lam. and Trifolium pratense L. were performed using three different substrates: control soil (i.e. sandy-loam brown acid soils with some podsolization), charcoal hearth soil (i.e. charcoal-enriched anthropogenic soils derived from the carbonization of larch wood on flat terraces) and control soil mixed with a fraction of fresh larch wood charcoal to reach the soil-charcoal ratio of 0.6. Both aged and fresh charcoal improved germination and markedly increased plant growth of the two plant species. The addition of fresh charcoal had an initial detrimental effect that disappeared in the second and third growth cycles. Plant Nitrogen:Phosphorus ratio revealed that growth was N-limited in the anthropogenic soils and P-limited in the control and freshly amended soils demonstrating that biochar aging is critical to obtain a significant growth stimulation. Plant nutrient contents revealed an improved fodder quality in both the charcoal amended soils. Despite the occurrence of limited toxic effects on seedlings, larch wood charcoal appears to have positive effects on fertility and fodder quality of alpine grasslands in the long term