Nearshore marine ecology at Hutchinson Island, Florida: 1971-1974. VI. plankton dynamics, 1971-1973, VII. phytoplankton 1971-1973, VIII. zooplankton, 1971-1973, IX. diel plankton, 1973-1974, X. benthic algae species list

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SLAH1, a homologue of the slow type anion channel SLAC1, modulates shoot Cl(-) accumulation and salt tolerance in Arabidopsis thaliana

Formally published in vol. 67, no. 15, 2016Salinity tolerance is correlated with shoot chloride (Cl⁻) exclusion in multiple crops, but the molecular mechanisms of long-distance Cl⁻ transport are poorly defined. Here, we characterize the in planta role of AtSLAH1 (a homologue of the slow type anion channel-associated 1 (SLAC1)). This protein, localized to the plasma membrane of root stelar cells, has its expression reduced by salt or ABA, which are key predictions for a protein involved with loading Cl– into the root xylem. Artificial microRNA knockdown mutants of AtSLAH1 had significantly reduced shoot Cl− accumulation when grown under low Cl⁻, whereas shoot Cl– increased and the shoot nitrate/chloride ratio decreased following AtSLAH1 constitutive or stelar-specific overexpression when grown in high Cl–. In both sets of overexpression lines a significant reduction in shoot biomass over the null segregants was observed under high Cl⁻ supply, but not low Cl⁻ supply. Further in planta data showed AtSLAH3 overexpression increased the shoot nitrate/chloride ratio, consistent with AtSLAH3 favouring nitrate transport. Heterologous expression of AtSLAH1 in Xenopus laevis oocytes led to no detectible transport, suggesting the need for post-translational modifications for AtSLAH1 to be active. Our in planta data are consistent with AtSLAH1 having a role in controlling root-to-shoot Cl⁻ transport.Jiaen Qiu, Sam W Henderson, Mark Tester, Stuart J Roy and Mathew Gilliha

Cofinement, entropy, and single-particle dynamics of equilibrium hard-sphere mixtures

We use discontinuous molecular dynamics and grand-canonical transition-matrix Monte Carlo simulations to explore how confinement between parallel hard walls modifies the relationships between packing fraction, self-diffusivity, partial molar excess entropy, and total excess entropy for binary hard-sphere mixtures. To accomplish this, we introduce an efficient algorithm to calculate partial molar excess entropies from the transition-matrix Monte Carlo simulation data. We find that the species-dependent self-diffusivities of confined fluids are very similar to those of the bulk mixture if compared at the same, appropriately defined, packing fraction up to intermediate values, but then deviate negatively from the bulk behavior at higher packing fractions. On the other hand, the relationships between self-diffusivity and partial molar excess entropy (or total excess entropy) observed in the bulk fluid are preserved under confinement even at relatively high packing fractions and for different mixture compositions. This suggests that the partial molar excess entropy, calculable from classical density functional theories of inhomogeneous fluids, can be used to predict some of the nontrivial dynamical behaviors of fluid mixtures in confined environments.Comment: submitted to JC

Free oxygen radicals regulate plasma membrane Ca2+- and K+-permeable channels in plant root cells

Free oxygen radicals are an irrefutable component of life, underlying important biochemical and physiological phenomena in animals. Here it is shown that free oxygen radicals activate plasma membrane Ca²⁺- and K⁺-permeable conductances in Arabidopsis root cell protoplasts, mediating Ca²⁺ influx and K⁺ efflux, respectively. Free oxygen radicals generate increases in cytosolic Ca²⁺ mediated by a novel population of nonselective cation channels that differ in selectivity and pharmacology from those involved in toxic Na⁺ influx. Analysis of the free oxygen radical-activated K⁺ conductance showed its similarity to the Arabidopsis root K⁺ outward rectifier. Significantly larger channel activation was found in cells responsible for perceiving environmental signals and undergoing elongation. Quenching root free oxygen radicals inhibited root elongation, confirming the role of radical-activated Ca²⁺ influx in cell growth. Net free oxygen radical-stimulated Ca²⁺ influx and K⁺ efflux were observed in root cells of monocots, dicots, C3 and C4 plants, suggesting conserved mechanisms and functions. In conclusion, two functions for free oxygen radical cation channel activation are proposed: initialization/amplification of stress signals and control of cell elongation in root growth.Vadim Demidchik, Sergey N. Shabala, Katherine B. Coutts, Mark A. Tester and Julia M. Davie

Accounting for variation in designing greenhouse experiments with special reference to greenhouses containing plants on conveyor systems

Extent: 21p.Background: There are a number of unresolved issues in the design of experiments in greenhouses. They include whether statistical designs should be used and, if so, which designs should be used. Also, are there thigmomorphogenic or other effects arising from the movement of plants on conveyor belts within a greenhouse? A two-phase, single-line wheat experiment involving four tactics was conducted in a conventional greenhouse and a fully-automated phenotyping greenhouse (Smarthouse) to investigate these issues. Results and discussion: Analyses of our experiment show that there was a small east–west trend in total area of the plants in the Smarthouse. Analyses of the data from three multiline experiments reveal a large north–south trend. In the single-line experiment, there was no evidence of differences between trios of lanes, nor of movement effects. Swapping plant positions during the trial was found to decrease the east–west trend, but at the cost of increased error variance. The movement of plants in a north–south direction, through a shaded area for an equal amount of time, nullified the north–south trend. An investigation of alternative experimental designs for equally-replicated experiments revealed that generally designs with smaller blocks performed best, but that (nearly) trend-free designs can be effective when blocks are larger. Conclusions: To account for variation in microclimate in a greenhouse, using statistical design and analysis is better than rearranging the position of plants during the experiment. For the relocation of plants to be successful requires that plants spend an equal amount of time in each microclimate, preferably during comparable growth stages. Even then, there is no evidence that this will be any more precise than statistical design and analysis of the experiment, and the risk is that it will not be successful at all. As for statistical design and analysis, it is best to use either (i) smaller blocks, (ii) (nearly) trend-free arrangement of treatments with a linear trend term included in the analysis, or, as a last resort, (iii) blocks of several complete rows with trend terms in the analysis. Also, we recommend that the greenhouse arrangement parallel that in the Smarthouse, but with randomization where appropriate.Chris J Brien, Bettina Berger, Huwaida Rabie and Mark Teste

Novel Characteristics of Valveless Pumping

This study investigates the occurrence of valveless pumping in a fluidfilled system consisting of two open tanks connected by an elastic tube. We show that directional flow can be achieved by introducing a periodic pinching applied at an asymmetrical location along the tube, and that the flow direction depends on the pumping frequency. We propose a relation between wave propagation velocity, tube length, and resonance frequencies associated with shifts in the pumping direction using numerical simulations. The eigenfrequencies of the system are estimated from the linearized system, and we show that these eigenfrequencies constitute the resonance frequencies and the horizontal slope frequencies of the system; 'horizontal slope frequency' being a new concept. A simple model is suggested, explaining the effect of the gravity driven part of the oscillation observed in response to the tank and tube diameter changes. Results are partly compared with experimental findings.Art. no. 22450