Refinement of the critical region for MCKD1 by detection of transcontinental haplotype sharing

Refinement of the critical region for MCKD1 by detection of transcontinental haplotype sharing.BackgroundAutosomal-dominant medullary cystic kidney disease type 1 (MCKD1) [OMIM 174000] is a hereditary nephropathy that leads to renal salt wasting and end-stage renal failure at a median age of 62 years. In a Welsh MCKD1 kindred we have recently demonstrated linkage to the MCKD1 locus on chromosome 1q23.1 and refined the critical MCKD1 region to <3.3Mb.MethodsIn order to refine the candidate gene region for MCKD1, high-resolution haplotype analysis in three large kindreds with MCKD1 was performed.ResultsWe report here on high-resolution haplotype analysis in this Welsh kindred, as well as in the Arizona kindred, which was used for the first definition of MCKD as a disease entity, and in a kindred from the Dutch/German border. We detected extensive haplotype sharing among all affected individuals of all three kindreds. Scrutinization of the genealogy of the Arizona kindred revealed an origin from Germany in the 17th century, thereby providing historical data for haplotype sharing by descent at the MCKD1 locus.ConclusionUnder the hypothesis of haplotype sharing by descent, we refined the critical genetic interval to <650kb, thus enabling candidate gene analysis

Interwell Connectivity and Diagnosis Using Correlation of Production and Injection Rate Data in Hydrocarbon Production

This report details progress and results on inferring interwell communication from well rate fluctuations. Starting with the procedure of Albertoni and Lake (2003) as a foundation, the goal of the project was to develop further procedures to infer reservoir properties through weights derived from correlations between injection and production rates. A modified method, described in Yousef and others (2006a,b), and herein referred to as the 'capacitance model', is the primary product of this research project. The capacitance model (CM) produces two quantities, {lambda} and {tau}, for each injector-producer well pair. For the CM, we have focused on the following items: (1) Methods to estimate {lambda} and {tau} from simulated and field well rates. The original method uses both non-linear and linear regression and lacks the ability to include constraints on {lambda} and {tau}. The revised method uses only non-linear regression, permitting constraints to be included as well as accelerating the solution so that problems with large numbers of wells are more tractable. (2) Approaches to integrate {lambda} and {tau} to improve connectivity evaluations. Interpretations have been developed using Lorenz-style and log-log plots to assess heterogeneity. Testing shows the interpretations can identify whether interwell connectivity is controlled by flow through fractures, high-permeability layers, or due to partial completion of wells. Applications to the South Wasson and North Buck Draw Fields show promising results. (3) Optimization of waterflood injection rates using the CM and a power law relationship for watercut to maximize economic return. Tests using simulated data and a range of oil prices show the approach is working. (4) Investigation of methods to increase the robustness of {lambda} and {tau} estimates. Human interventions, such as workovers, also cause rate fluctuations and can be misinterpreted by the model if bottom hole pressure data are not available. A revised method, called the 'segmented capacitance model', identifies times when production changes might not be caused strictly by water injection changes. Application to data from Monument Butte Field shows encouraging results. Our results show the CM and its modified forms can be an important tool for waterflood management. We have moved beyond the proof of principle stage to show it can actually be applied to assess connectivity in field situations. Several shortcomings, however, remain to be addressed before the CM can be routinely applied by field operators. The CM and its modifications analyze well rates in the time domain. We also explored the assessment of interwell connectivity in the spectral domain. We applied conventional methods, based on analyzing passive linear electrical networks, to the analysis of injection and production data. In particular, we assessed the effects of near-wellbore gas on the apparent connectivity. With only oil and water in the system, the results were as expected, giving good connectivity estimates. In the presence of gas, however, the methods could not produce useful estimates of connectivity

Collisional and Radiative Processes in Optically Thin Plasmas

Most of our knowledge of the physical processes in distant plasmas is obtained through measurement of the radiation they produce. Here we provide an overview of the main collisional and radiative processes and examples of diagnostics relevant to the microphysical processes in the plasma. Many analyses assume a time-steady plasma with ion populations in equilibrium with the local temperature and Maxwellian distributions of particle velocities, but these assumptions are easily violated in many cases. We consider these departures from equilibrium and possible diagnostics in detail

Native diversity buffers against severity of non-native tree invasions

Determining the drivers of non-native plant invasions is critical for managing native ecosystems and limiting the spread of invasive species1,2. Tree invasions in particular have been relatively overlooked, even though they have the potential to transform ecosystems and economies3,4. Here, leveraging global tree databases5–7, we explore how the phylogenetic and functional diversity of native tree communities, human pressure and the environment influence the establishment of non-native tree species and the subsequent invasion severity. We find that anthropogenic factors are key to predicting whether a location is invaded, but that invasion severity is underpinned by native diversity, with higher diversity predicting lower invasion severity. Temperature and precipitation emerge as strong predictors of invasion strategy, with non-native species invading successfully when they are similar to the native community in cold or dry extremes. Yet, despite the influence of these ecological forces in determining invasion strategy, we find evidence that these patterns can be obscured by human activity, with lower ecological signal in areas with higher proximity to shipping ports. Our global perspective of non-native tree invasion highlights that human drivers influence non-native tree presence, and that native phylogenetic and functional diversity have a critical role in the establishment and spread of subsequent invasions

Variation in neurosurgical management of traumatic brain injury

Background: Neurosurgical management of traumatic brain injury (TBI) is challenging, with only low-quality evidence. We aimed to explore differences in neurosurgical strategies for TBI across Europe. Methods: A survey was sent to 68 centers participating in the Collaborative European Neurotrauma Effectiveness Research in Traumatic Brain Injury (CENTER-TBI) study. The questionnaire contained 21 questions, including the decision when to operate (or not) on traumatic acute subdural hematoma (ASDH) and intracerebral hematoma (ICH), and when to perform a decompressive craniectomy (DC) in raised intracranial pressure (ICP). Results: The survey was completed by 68 centers (100%). On average, 10 neurosurgeons work in each trauma center. In all centers, a neurosurgeon was available within 30 min. Forty percent of responders reported a thickness or volume threshold for evacuation of an ASDH. Most responders (78%) decide on a primary DC in evacuating an ASDH during the operation, when swelling is present. For ICH, 3% would perform an evacuation directly to prevent secondary deterioration and 66% only in case of clinical deterioration. Most respondents (91%) reported to consider a DC for refractory high ICP. The reported cut-off ICP for DC in refractory high ICP, however, differed: 60% uses 25 mmHg, 18% 30 mmHg, and 17% 20 mmHg. Treatment strategies varied substantially between regions, specifically for the threshold for ASDH surgery and DC for refractory raised ICP. Also within center variation was present: 31% reported variation within the hospital for inserting an ICP monitor and 43% for evacuating mass lesions. Conclusion: Despite a homogeneous organization, considerable practice variation exists of neurosurgical strategies for TBI in Europe. These results provide an incentive for comparative effectiveness research to determine elements of effective neurosurgical care

Optimization of chemical processes

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