7 research outputs found
The Clarens web services architecture
Clarens is a uniquely flexible web services infrastructure providing a
unified access protocol to a diverse set of functions useful to the HEP
community. It uses the standard HTTP protocol combined with application layer,
certificate based authentication to provide single sign-on to individuals,
organizations and hosts, with fine-grained access control to services, files
and virtual organization (VO) management. This contribution describes the
server functionality, while client applications are described in a subsequent
talk.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics
(CHEP03), La Jolla, Ca, USA, March 2003, 6 pages, LaTeX, 4 figures, PSN
MONT00
Clarens Client and Server Applications
Several applications have been implemented with access via the Clarens web
service infrastructure, including virtual organization management, JetMET
physics data analysis using relational databases, and Storage Resource Broker
(SRB) access. This functionality is accessible transparently from Python
scripts, the Root analysis framework and from Java applications and browser
applets.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics
(CHEP03), La Jolla, Ca, USA, March 2003, 4 pages, LaTeX, no figures, PSN
TUCT00
Clarens Client and Server Applications
This paper describes Python, ROOT, Iguana and browser-based clients for the Clarens web services framework. Back-end services provided include file access, proxy escrow, virtual organization management, Storage Resource Broker access, job execution, and a relational database analysis interface. 1
NUPACK: Analysis and design of nucleic acid systems
The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables:
•Analysis: thermodynamic analysis of dilute solutions of interacting nucleic acid strands.
•Design: sequence design for complexes of nucleic acid strands intended to adopt a target secondary structure at equilibrium.
•Utilities: evaluation, display, and annotation of equilibrium properties of a complex of nucleic acid strands.
NUPACK algorithms are formulated in terms of nucleic acid secondary structure. In most cases, pseudoknots are excluded from the structural ensemble
NUPACK: Analysis and design of nucleic acid systems
The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables:
•Analysis: thermodynamic analysis of dilute solutions of interacting nucleic acid strands.
•Design: sequence design for complexes of nucleic acid strands intended to adopt a target secondary structure at equilibrium.
•Utilities: evaluation, display, and annotation of equilibrium properties of a complex of nucleic acid strands.
NUPACK algorithms are formulated in terms of nucleic acid secondary structure. In most cases, pseudoknots are excluded from the structural ensemble