49 research outputs found

    Exact traveling wave solutions of one-dimensional models of cancer invasion

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    In this paper we consider continuous mathematical models of tumour growth and invasion based on the model introduced by Chaplain and Lolas \cite{Chaplain&Lolas2006}, for the case of one space dimension. The models consist of a system of three coupled nonlinear reaction-diffusion-taxis partial differential equations describing the interactions between cancer cells, the matrix degrading enzyme and the tissue. For these models under certain conditions on the model parameters we obtain exact analytical solutions in terms of traveling wave variables. These solutions are smooth positive definite functions for some of which whose profiles agree with those obtained from numerical computations \cite{Chaplain&Lolas2006} for not very large time intervals.Comment: 19 pages, 6 figure

    Exact Traveling Wave Solutions of One-Dimensional Parabolic-Parabolic Models of Chemotaxis

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    In this chapter we consider several different parabolic-parabolic systems of chemotaxis which depend on time and one space coordinate. For these systems we obtain the exact analytical solutions in terms of traveling wave variables. Not all of these solutions are acceptable for biological interpretation, but there are solutions that require detailed analysis. We find this interesting, since chemotaxis is present in the continuous mathematical models of cancer growth and invasion (Anderson, Chaplain, Lolas, et al.) which are described by the systems of reaction–diffusion-taxis partial differential equations, and the obtaining of exact solutions to these systems seems to be a very interesting task, and a more detailed analysis is possible in a future study

    Characterization of the Allosteric Properties of Thermus thermophilus Phosphofructokinase and the Sources of Strong Inhibitor Binding Affinity and Weak Inhibitory Response

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    Characterization of allosteric properties of phosphofructokinase from the extreme thermophile Thermus thermophilus (TtPFK) using thermodynamic linkage analysis revealed several peculiarities. Inhibition and activation of Fru-6-P binding by the allosteric effectors phosphoenolpyruvate (PEP) and MgADP are entropically-driven in TtPFK. It is also curious that PEP binding affinity is unusually strong in TtPFK when compared to PFKs from Escherichia coli, Bacillus stearothermophilus, and Lactobacillus delbrueckii, while the magnitude of the allosteric inhibition by PEP is much smaller in TtPFK. In an effort to understand the source of weak inhibition, a putative network of residues between the allosteric site and the nearest active site was identified from the three-dimensional structures of BsPFK. Three of the residues in this network, D59, T158, and H215, are not conserved in TtPFK, and, due to their nature (N59, A158, S215), are unlikely to be involved in the same non-covalent interactions seen in BsPFK. The triple chimeric substitution N59D/A158T/S215H, results in a 2.5 kcal mol-1 increase in the coupling free energy, suggesting that the region containing these residues may be important for propagation of inhibitory response. The individual substitutions at each position resulted in an increase in the coupling free energy, and the double substitutions displayed additivity of these changes. The chimeric substitution made at N59 suggests that the polar nature of the asparagine at position 59 is key for the enhanced binding of PEP. The non-conserved R55 was found to be particularly important for the enhanced binding of PEP in TtPFK, as chimeric substitutions R55G and R55E resulted in a 3.5 kcal mol-1 and 4.5 kcal mol-1 decrease in the binding affinity for PEP, respectively. Our results also confirm the observations previously made in PFKs from E. coli and B. stearothermophilus, that the ability of the effector to bind is independent of its ability to produce allosteric response. We show that several substitutions result in a decrease in binding affinity of PEP to TtPFK, while dramatically enhancing its ability to inhibit (N59D, R55G, R55E). Similarly, some substitutions, like S215H and A158T show an enhanced inhibition by PEP, while having no effect on its binding affinity

    "Summary Page": a novel tool that reduces omitted data in research databases

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    <p>Abstract</p> <p>Background</p> <p>Data entry errors are common in clinical research databases. Omitted data are of particular concern because they are more common than erroneously inserted data and therefore could potentially affect research findings. However, few affordable strategies for their prevention are available.</p> <p>Methods</p> <p>We have conducted a prospective observational study of the effect of a novel tool called "<it>Summary Page</it>" on the frequency of correction of omitted data errors in a radiation oncology research database between July 2008 and March 2009. "<it>Summary Page</it>" was implemented as an optionally accessed screen in the database that visually integrates key fields in the record. We assessed the frequency of omitted data on the example of the <it>Date of Relapse </it>field. We considered the data in this field to be omitted for all records that had empty <it>Date of Relapse </it>field and evidence of relapse elsewhere in the record.</p> <p>Results</p> <p>A total of 1,156 records were updated and 200 new records were entered in the database over the study period. "<it>Summary Page</it>" was accessed for 44% of all updated records and for 69% of newly entered records. Frequency of correction of the omitted date of cancer relapse was six-fold higher in records for which "<it>Summary Page</it>" was accessed (p = 0.0003).</p> <p>Conclusions</p> <p>"<it>Summary Page</it>" was strongly associated with an increased frequency of correction of omitted data errors. Further, controlled, studies are needed to confirm this finding and elucidate its mechanism of action.</p
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