Identifying DNA motifs based on match and mismatch alignment information

The conventional way of identifying DNA motifs, solely based on match alignment information, is susceptible to a high number of spurious sites. A novel scoring system has been introduced by taking both match and mismatch alignment information into account. The mismatch alignment information is useful to remove spurious sites encountered in DNA motif searching. As an example, a correct TATA box site in Homo sapiens H4/g gene has successfully been identified based on match and mismatch alignment information

Fourier-based classification of protein secondary structures

The correct prediction of protein secondary structures is one of the key issues in predicting the correct protein folded shape, which is used for determining gene function. Existing methods make use of amino acids properties as indices to classify protein secondary structures, but are faced with a significant number of misclassifications. The paper presents a technique for the classification of protein secondary structures based on protein "signal-plotting" and the use of the Fourier technique for digital signal processing. New indices are proposed to classify protein secondary structures by analyzing hydrophobicity profiles. The approach is simple and straightforward. Results show that the more types of protein secondary structures can be classified by means of these newly-proposed indices

Achieving Covert Wireless Communications Using a Full-Duplex Receiver

Covert communications hide the transmission of a message from a watchful adversary while ensuring a certain decoding performance at the receiver. In this work, a wireless communication system under fading channels is considered where covertness is achieved by using a full-duplex (FD) receiver. More precisely, the receiver of covert information generates artificial noise with a varying power causing uncertainty at the adversary, Willie, regarding the statistics of the received signals. Given that Willie's optimal detector is a threshold test on the received power, we derive a closed-form expression for the optimal detection performance of Willie averaged over the fading channel realizations. Furthermore, we provide guidelines for the optimal choice of artificial noise power range, and the optimal transmission probability of covert information to maximize the detection errors at Willie. Our analysis shows that the transmission of artificial noise, although causes self-interference, provides the opportunity of achieving covertness but its transmit power levels need to be managed carefully. We also demonstrate that the prior transmission probability of 0.5 is not always the best choice for achieving the maximum possible covertness, when the covert transmission probability and artificial noise power can be jointly optimized.Comment: 13 pages, 11 figures, Accepted for publication in IEEE Transactions on Wireless Communication

Quantum spin Hall effect induced by electric field in silicene

We investigate the transport properties in a zigzag silicene nanoribbon in the presence of an external electric field. The staggered sublattice potential and two kinds of Rashba spin-orbit couplings can be induced by the external electric field due to the buckled structure of the silicene. A bulk gap is opened by the staggered potential and gapless edge states appear in the gap by tuning the two kinds of Rashba spin-orbit couplings properly. Furthermore, the gapless edge states are spin-filtered and are insensitive to the non-magnetic disorder. These results prove that the quantum spin Hall effect can be induced by an external electric field in silicene, which may have certain practical significance in applications for future spintronics device.Comment: 4 pages, 5 figure