Genome sequence of mungbean and insights into evolution within Vigna species

Mungbean (Vigna radiata) is a fast-growing, warm-season legume crop that is primarily cultivated in developing countries of Asia. Here we construct a draft genome sequence of mungbean to facilitate genome research into the subgenus Ceratotropis, which includes several important dietary legumes in Asia, and to enable a better understanding of the evolution of leguminous species. Based on the de novo assembly of additional wild mungbean species, the divergence of what was eventually domesticated and the sampled wild mungbean species appears to have predated domestication. Moreover, the de novo assembly of a tetraploid Vigna species (V. reflexo-pilosa var. glabra) provides genomic evidence of a recent allopolyploid event. The species tree is constructed using de novo RNA-seq assemblies of 22 accessions of 18 Vigna species and protein sets of Glycine max. The present assembly of V. radiata var. radiata will facilitate genome research and accelerate molecular breeding of the subgenus Ceratotropis

Antibodies against endogenous retroviruses promote lung cancer immunotherapy

B cells are frequently found in the margins of solid tumours as organized follicles in ectopic lymphoid organs called tertiary lymphoid structures (TLS)1,2. Although TLS have been found to correlate with improved patient survival and response to immune checkpoint blockade (ICB), the underlying mechanisms of this association remain elusive1,2. Here we investigate lung-resident B cell responses in patients from the TRACERx 421 (Tracking Non-Small-Cell Lung Cancer Evolution Through Therapy) and other lung cancer cohorts, and in a recently established immunogenic mouse model for lung adenocarcinoma3. We find that both human and mouse lung adenocarcinomas elicit local germinal centre responses and tumour-binding antibodies, and further identify endogenous retrovirus (ERV) envelope glycoproteins as a dominant anti-tumour antibody target. ERV-targeting B cell responses are amplified by ICB in both humans and mice, and by targeted inhibition of KRAS(G12C) in the mouse model. ERV-reactive antibodies exert anti-tumour activity that extends survival in the mouse model, and ERV expression predicts the outcome of ICB in human lung adenocarcinoma. Finally, we find that effective immunotherapy in the mouse model requires CXCL13-dependent TLS formation. Conversely, therapeutic CXCL13 treatment potentiates anti-tumour immunity and synergizes with ICB. Our findings provide a possible mechanistic basis for the association of TLS with immunotherapy response

Morphology of strobili at different development positions and cone and seed characteristics of Pinus densiflora f. multicaulis

Pinus densiflora f. multicaulis is a rare and unusual form of genus Pinus. It has excellent ornamen- tal values due to many trunks from its root collar, and produces female, male, and bisexual strobili on the same tree. However, there is limited study whether the bisexual strobili are functional, mature lateral cones produce filled seeds, and the seeds from the mature lateral cones germinate and grow as well as those from mature apical cones. The structure of apical female, and lateral male and bisexual strobili were analyzed in an open-pollination-progeny population. The strobili were photographed to obtain external, cross-section, and radial-section images using a 45× stereoscopic microscope. Radial sections of strobili were imaged using scanning electron microscopy. Characteristics of apical and lateral cones and seeds were surveyed by cone analysis and germination test. P. densiflora f. multicaulis developed typical female strobili apically, and ordinary male and bisexual strobili laterally. Additionally, female strobili developed laterally whereas the male strobili were normally located. The mature lateral female strobili had the same structure as the apical female. In the mature bisexual strobili, the proportion of male and female tissue was unequal. The cones developed from lateral female strobili showed highly significant differences in the length, width, and weight, being shorter (32.7%), narrower (26.9%), and lighter (59.8%) than those from apical female strobili. Both types produced filled seeds and seedlings, and well significant positive correlations were found among characteristics of seeds from apical and lateral female strobili. The initial seed germination rate of the seeds from apical female strobili was higher than that of seeds from lateral female strobili, but the difference decreased over time. The viability and spatial distribution of the female and male tissue of bisporangiate cones, and their frequent occurrence suggests a common mechanism for the production of bisporangiate structures in seed plants