Regulation of Plant Growth and Development: A Review From a Chromatin Remodeling Perspective

In eukaryotes, genetic material is packaged into a dynamic but stable nucleoprotein structure called chromatin. Post-translational modification of chromatin domains affects the expression of underlying genes and subsequently the identity of cells by conveying epigenetic information from mother to daughter cells. SWI/SNF chromatin remodelers are ATP-dependent complexes that modulate core histone protein polypeptides, incorporate variant histone species and modify nucleotides in DNA strands within the nucleosome. The present review discusses the SWI/SNF chromatin remodeler family, its classification and recent advancements. We also address the involvement of SWI/SNF remodelers in regulating vital plant growth and development processes such as meristem establishment and maintenance, cell differentiation, organ initiation, flower morphogenesis and flowering time regulation. Moreover, the role of chromatin remodelers in key phytohormone signaling pathways is also reviewed. The information provided in this review may prompt further debate and investigations aimed at understanding plant-specific epigenetic regulation mediated by chromatin remodeling under continuously varying plant growth conditions and global climate change

Climatic and Anthropogenic Impacts on ´13C Variations in a Stalagmite from Central China

In this paper, we present a δ13C record that covers the past 750 years at a resolution of 2 - 3 years which was preserved in a precisely dated stalagmite (DY-1) obtained from the Dayu Cave on the south flank of the Qinling Mountains in central China. Between 1249 AD and 1800 AD, climate-induced vegetation changes appear to have been the primary control on δ13C values at a centennial scale. Variations in precipitation amounts control the residence time of seepage water and may have affected the dissolution of bedrock, prior carbonate precipitation in the unsaturated zone above the cave, and the degassing of CO2 within the cave. These hydrogeochemical processes are likely to have been the most important controls on δ13C levels over annual to decadal scales, and may also have influenced centennial-scale variations. The reduced δ13C value of atmospheric CO2 since the Industrial Revolution may have caused the decreasing trend in δ13C values seen in stalagmite DY-1 after 1800 AD. Increased visitor numbers in the unventilated Dayu Cave over time produced a large amount of CO2, and maintained a raised level of pCO2 in the cave air. This artificially enhanced pCO2 may have decreased the fraction of CO2 degassing, and hence carbonate precipitation, which could partly cause the decreasing trend in the stalagmite δ13C seen over the past 200 years

Climate patterns in north central China during the last 1800 yr and their possible driving force

We synthesized high-resolution precisely-dated stalagmite records and historical document records from north central China to reconstruct a decadal resolution precipitation record during the last 1800 years (190–1980 AD). The synthesized precipitation record shows coincident variations and significant positive correlations with the temperature reconstructions on centennial- to multidecadal-scale, suggesting warm-humid/cool-dry was the main climate pattern in north central China over the past 1800 years. Solar activity may be the dominant force that drove the same-phase variations of the temperature and precipitation in north central China

Climatic and anthropogenic impacts on δ13C variations in a stalagmite from central China.

In this paper, we present a delta C-13 record that covers the past 750 years at a resolution of 2 - 3 years which was preserved in a precisely dated stalagmite (DY-1) obtained from the Dayu Cave on the south flank of the Qinling Mountains in central China. Between 1249 AD and 1800 AD, climate-induced vegetation changes appear to have been the primary control on delta C-13 values at a centennial scale. Variations in precipitation amounts control the residence time of seepage water and may have affected the dissolution of bedrock, prior carbonate precipitation in the unsaturated zone above the cave, and the degassing of CO2 within the cave. These hydrogeochemical processes are likely to have been the most important controls on delta C-13 levels over annual to decadal scales, and may also have influenced centennial-scale variations. The reduced delta C-13 value of atmospheric CO2 since the Industrial Revolution may have caused the decreasing trend in delta C-13 values seen in stalagmite DY-1 after 1800 AD. Increased visitor numbers in the unventilated Dayu Cave over time produced a large amount of CO2, and maintained a raised level of pCO(2) in the cave air. This artificially enhanced pCO(2) may have decreased the fraction of CO2 degassing, and hence carbonate precipitation, which could partly cause the decreasing trend in the stalagmite delta C-13 seen over the past 200 years.</p

Genome-Wide Identification and Expression Profiling of CBL-CIPK Gene Family in Pineapple (Ananas comosus) and the Role of AcCBL1 in Abiotic and Biotic Stress Response

Ca2+ serves as a ubiquitous second messenger regulating several aspects of plant growth and development. A group of unique calcium sensor proteins, calcineurin B-like (CBL), interact with CBL-interacting protein kinases (CIPKs) to decode the Ca2+ signature inside the cell. Although CBL-CIPK signaling toolkit has been shown to play significant roles in the responses to numerous stresses in different plants, the information about pineapple CBL-CIPK remains obscure. In the present study, a total of eight AcCBL and 21 AcCIPK genes were identified genome-wide in pineapple. The identified genes were renamed on the basis of gene ID in ascending order and phylogenetic analysis divided into five groups. Transcriptomic data analysis showed that AcCBL and AcCIPK genes were expressed differentially in different tissues. Further, the expression analysis of AcCBL1 in different tissues showed significant changes under various abiotic stimuli. Additionally, the ectopic expression of AcCBL1 in Arabidopsis resulted in enhanced tolerance to salinity, osmotic, and fungal stress. The present study revealed the crucial contribution of the CBL-CIPK gene in various biological and physiological processes in pineapple

The 1997-1998 El Nino event recorded by a stalagmite from central China

The El Nino-Southern Oscillation (ENSO) is one of the most important oceanic and atmospheric phenomena that cause global climate variations. In this study, we reported a stalagmite delta O-18 record from Shizi cave in central China, which clearly shows a prominently positive variation during 1997-1998 CE. This delta O-18 variation correlates well with a thinner annual layer that indicates a decrease in the growth rate, possibly due to a reduction of the rainfall amount near our study site caused by the 1997-1998 El Nino event. This hypothesis is supported by a comparison of the variations of the rainfall amount near the study site in terms of the southern oscillation index (SOI) for the last 60 years, which indicates that almost all of the El Nino events lead to a reduced rainfall amount. The results suggest that speleothems deposited in central China may potentially reflect El Nino activity. (C) 2017 Elsevier Ltd and INQUA. All rights reserved

Stable isotope composition alteration produced by the aragonite-to-calcite transformation in speleothems and implications for paleoclimate reconstructions

Aragonite, a mineralogical constituent of speleothems in cave environments, is unstable and susceptible to inversion to calcite, a diagenetic process that involves changes in the mineralogy, texture and geochemistry of speleothems. However, the exact alterations of stable isotope compositions during such diagenesis have not been fully investigated. In this study, two aragonite stalagmites (SN3 and SN15) from the Shennong Cave, southeast China, were found partially inverted to calcite, as determined by X-ray diffraction (XRD) and scanning electron microscopy (SEM) analyses, and thin-section inspections under microscope. The fiber relics and textural ghosts of aragonite preserved in coarse and equant mosaic calcite crystals clearly indicate that the calcite in these two stalagmites were inverted from aragonite. The stable isotope compositions (delta C-13 and delta O-18, given in per mil versus VPDB standard) of primary aragonite and secondary calcite were analyzed and compared, along both growth layers and growth axes. The results show that, along growth layers, differences of delta C-13 values between aragonite and calcite are negligible (0.1 parts per thousand-0.2%.), whereas differences of delta O-18 values between aragonite and calcite are significant (0.63 parts per thousand-0.87%0). Comparisons along growth axes show similar results: i.e., differences of delta 13C values are negligible (0.06% +/- 0.22%.) whereas differences of delta O-18 values are significant (0.85 parts per thousand +/- 0.29%.). Most likely, the aragonite in SN3 and SN15 were internally inverted by interactions of trace calcite crystallites and pore water within intercrystalline pore spaces, by a dissolution-reprecipitation process occurring in trapped pore water. In the case of the inversion of aragonite to calcite in speleothems, such as that observed in SN3 and SN15, the delta 13C values could be used in paleoclimate and paleoenvironment reconstructions because they are inherited from those of primary aragonite. Although the delta O-18 values might be cross-calibrated to those of primary aragonite if the aragonite-calcite fractionation offset is known (e.g., 0.85 parts per thousand +/- 0.29%0 in this study), however, the delta O-18 values of secondary calcite should be used with caution in such reconstructions as the delta O-18 offset value is not consistently invariable.</p

Genome-Wide Identification, Characterization, and Expression Analysis of the <i>BES1</i> Family Genes under Abiotic Stresses in <i>Phoebe bournei</i>

The BRI1 EMS suppressor 1(BES1) transcription factor is a crucial regulator in the signaling pathway of Brassinosteroid (BR) and plays an important role in plant growth and response to abiotic stress. Although the identification and functional validation of BES1 genes have been extensively explored in various plant species, the understanding of their role in woody plants—particularly the endangered species Phoebe bournei (Hemsl.) Yang—remains limited. In this study, we identified nine members of the BES1 gene family in the genome of P. bournei; these nine members were unevenly distributed across four chromosomes. In our further evolutionary analysis of PbBES1, we discovered that PbBES1 can be divided into three subfamilies (Class I, Class II, and Class IV) based on the evolutionary tree constructed with Arabidopsis thaliana, Oryza sativa, and Solanum lycopersicum. Each subfamily contains 2–5 PbBES1 genes. There were nine pairs of homologous BES1 genes in the synteny analysis of PbBES1 and AtBES1. Three segmental replication events and one pair of tandem duplication events were present among the PbBES1 family members. Additionally, we conducted promoter cis-acting element analysis and discovered that PbBES1 contains binding sites for plant growth and development, cell cycle regulation, and response to abiotic stress. PbBES1.2 is highly expressed in root bark, stem bark, root xylem, and stem xylem. PbBES1.3 was expressed in five tissues. Moreover, we examined the expression profiles of five representative PbBES1 genes under heat and drought stress. These experiments preliminarily verified their responsiveness and functional roles in mediating responses to abiotic stress. This study provides important clues to elucidate the functional characteristics of the BES1 gene family, and at the same time provides new insights and valuable information for the regulation of resistance in P. bournei