Assessment of carbon sink capacity and its value accounting for a farmed shellfish in the coastal wetland of the Yalu River Estuary

The carbon sink of cultivation shellfish in coastal wetlands is characterized as both highly ecological and economic value, thus making great contributions to achieving carbon neutrality. In this study, the main species of cultured shellfish (Ruditapes philippinarum, Meretrix meretrix, Sinonovacula constricta, Scapharca suberenata, and Grassostrea gigas) were selected as the research objects in the coastal wetland of the Yalu River Estuary to measure shellfish yields and carbon contents. Combined with the data from the cultured shellfish of fishery statistics of Donggang city, Dandong, Liaoning Province, China, the carbon sequestration capacity was calculated, and the carbon sink values of cultured shellfish also evaluated on the base of the diverse shellfish carbon sequestration ratios. The carbon sink conversion ratio of cultivation shellfish decreased in the following order: S. suberenata, R. philippinarum, G. gigas, S. constricta, and M. meretrix. The total carbon sequestration of cultured shellfish in the Yalu River Estuary Coastal Wetland from 2015 to 2019 was approximately 110,500 tC. The yield and the carbon sequestration quantity of R. philippinarum accounted for 76.60~83.30% of the total yield and 79.07~85.41% of the total carbon sequestration quantity. The value of the carbon sink was approximately 63,710,600 yuan. Among the species of cultured shellfish, R. philippinarum was the largest contributor to the carbon sink value. Based on Tapio’s decoupling model, R. philippinarum has the most ideal state of decoupling between carbon sink and economic growth of cultured shellfish, followed by M. meretrix and S. suberenata. Our results illustrate that the development of coastal wetland shellfish aquaculture has a positive contribution to reducing carbon emissions and increasing carbon sinks

High-Density Genetic Linkage Maps Provide Novel Insights Into ZW/ZZ Sex Determination System and Growth Performance in Mud Crab (Scylla paramamosain)

Mud crab, Scylla paramamosain is one of the most important crustacean species in global aquaculture. To determine the genetic basis of sex and growth-related traits in S. paramamosain, a high-density genetic linkage map with 16,701 single nucleotide polymorphisms (SNPs) was constructed using SLAF-seq and a full-sib family. The consensus map has 49 linkage groups, spanning 5,996.66 cM with an average marker-interval of 0.81 cM. A total of 516 SNP markers, including 8 female-specific SNPs segregated in two quantitative trait loci (QTLs) for phenotypic sex were located on LG32. The presence of female-specific SNP markers only on female linkage map, their segregation patterns and lower female: male recombination rate strongly suggest the conformation of a ZW/ZZ sex determination system in S. paramamosain. The QTLs of most (90%) growth-related traits were found within a small interval (25.18–33.74 cM) on LG46, highlighting the potential involvement of LG46 in growth. Four markers on LG46 were significantly associated with 10–16 growth-related traits. BW was only associated with marker 3846. Based on the annotation of transcriptome data, 11 and 2 candidate genes were identified within the QTL regions of sex and growth-related traits, respectively. The newly constructed high-density genetic linkage map with sex-specific SNPs, and the identified QTLs of sex- and growth-related traits serve as a valuable genetic resource and solid foundation for marker-assisted selection and genetic improvement of crustaceans

Environmental Adaptation: Genomic Analysis of the Piezotolerant and Psychrotolerant Deep-Sea Iron Reducing Bacterium Shewanella piezotolerans WP3

Shewanella species are widespread in various environments. Here, the genome sequence of Shewanella piezotolerans WP3, a piezotolerant and psychrotolerant iron reducing bacterium from deep-sea sediment was determined with related functional analysis to study its environmental adaptation mechanisms. The genome of WP3 consists of 5,396,476 base pairs (bp) with 4,944 open reading frames (ORFs). It possesses numerous genes or gene clusters which help it to cope with extreme living conditions such as genes for two sets of flagellum systems, structural RNA modification, eicosapentaenoic acid (EPA) biosynthesis and osmolyte transport and synthesis. And WP3 contains 55 open reading frames encoding putative c-type cytochromes which are substantial to its wide environmental adaptation ability. The mtr-omc gene cluster involved in the insoluble metal reduction in the Shewanella genus was identified and compared. The two sets of flagellum systems were found to be differentially regulated under low temperature and high pressure; the lateral flagellum system was found essential for its motility and living at low temperature

Characteristics of head frequency response in blunt impacts: a biomechanical modeling study

Existing evaluation criteria for head impact injuries are typically based on time-domain features, and less attention has been paid to head frequency responses for head impact injury assessment. The purpose of the current study is, therefore, to understand the characteristics of human body head frequency response in blunt impacts via finite element (FE) modeling and the wavelet packet analysis method. FE simulation results show that head frequency response in blunt impacts could be affected by the impact boundary condition. The head energy peak and its frequency increase with the increase in impact; a stiffer impact block is associated with a higher head energy peak, and a bigger impact block could result in a high proportion of the energy peak. Regression analysis indicates that only the head energy peak has a high correlation with exiting head injury criteria, which implies that the amplitude–frequency aggregation characteristic but not the frequency itself of the head acceleration response has predictability for head impact injury in blunt impacts. The findings of the current study may provide additional criteria for head impact injury evaluation and new ideas for head impact injury protection

Health benefits of butyrate and its producing bacterium, Clostridium butyricum, on aquatic animals

Aquaculture plays an important role in contributing to global food security and nutrition; thus, the intensification and diversification of aquaculture are increasingly considered. However, paralleling the development of the industrial scale in aquaculture, the occurrence of diseases is always an important issue that causes great losses in economics. The finding of approaches that not only improve culture production but also reduce the impact of diseases in cultured animals is crucially essential. Previously, several studies have addressed the potential application of feed additives, such as prebiotics, probiotics, synbiotics, and microbial-derived metabolites (including short-chain fatty acids-SCFAs), in aquaculture. In this review, we provide an update focusing on the health benefits of dietary supplementation with a type of SCFAs, butyrate, and its producer, Clostridium butyricum, including their effects on growth, feed utilization, body composition, intestinal structure and function, antioxidant activity, immune response, and tolerance against stress and infection in aquatic animals. The outcomes of this study may indicate more benefits of the use of C. butyricum than that of butyrate (and its forms). This review provides general knowledge of the efficacy of butyrate and C. butyricum in aquaculture

Characterization of the complete mitochondrial genome of a holothurians species: Holothuria hilla (Holothuroidea: Holothuriidae)

Mitochondrial genome sequence is a great potential method to both resolve disputed taxonomic issues and to infer phylogenetic relationships among holothurians. In this study, we present the complete mitochondrial genome of Holothuria hilla which was 15,744 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a putative control region. The gene content and arrangement were typical for Holothuroidea ground pattern. The overall base composition was 32.43% A, 27.20% T, 24.35% C and 16.02% G, showing a bias toward A + T (59.63%). The maximum-likelihood tree based on the concatenated 13 protein-coding genes revealed the phylogenetic relationships among the Holothuroidea species

Exosome-mediated apoptosis pathway during WSSV infection in crustacean mud crab.

MicroRNAs are regulatory molecules that can be packaged into exosomes to modulate cellular response of recipients. While the role of exosomes during viral infection is beginning to be appreciated, the involvement of exosomal miRNAs in immunoregulation in invertebrates has not been addressed. Here, we observed that exosomes released from WSSV-injected mud crabs could suppress viral replication by inducing apoptosis of hemocytes. Besides, miR-137 and miR-7847 were found to be less packaged in mud crab exosomes during viral infection, with both miR-137 and miR-7847 shown to negatively regulate apoptosis by targeting the apoptosis-inducing factor (AIF). Our data also revealed that AIF translocated to the nucleus to induce DNA fragmentation, and could competitively bind to HSP70 to disintegrate the HSP70-Bax (Bcl-2-associated X protein) complex, thereby activating the mitochondria apoptosis pathway by freeing Bax. The present finding therefore provides a novel mechanism that underlies the crosstalk between exosomal miRNAs and apoptosis pathway in innate immune response in invertebrates

Role of Cellular Receptors in the Innate Immune System of Crustaceans in Response to White Spot Syndrome Virus

Innate immunity is the only defense system for resistance against infections in crustaceans. In crustaceans, white spot diseases caused by white spot syndrome virus (WSSV) are a serious viral disease with high accumulative mortality after infection. Attachment and entry into cells have been known to be two initial and important steps in viral infection. However, systematic information about the mechanisms related to WSSV infection in crustaceans is still limited. Previous studies have reported that cellular receptors are important in the innate immune system and are responsible for the recognition of foreign microorganisms and in the stimulation of the immune responses during infections. In this review, we summarize the current understanding of the functions of cellular receptors, including Toll, C-type lectin, scavenger receptor, β-integrin, polymeric immunoglobulin receptor, laminin receptor, globular C1q receptor, lipopolysaccharide-and β-1,3-glucan-binding protein, chitin-binding protein, Ras-associated binding, and Down syndrome cell adhesion molecule in the innate immune defense of crustaceans, especially shrimp and crabs, in response to WSSV infection. The results of this study provide information on the interaction between viruses and hosts during infections, which is important in the development of preventative strategies and antiviral targets in cultured aquatic animals