Didelphid marsupials.

177 p. : ill. (some col.) ; 26 cm. "Issued June 30, 2009." Includes bibliographical references (p. 142-156).This report summarizes a decade of morphological and molecular research on the phylogenetic relationships of didelphid marsupials (opossums), a substantially intact radiation of New World metatherian mammals. We review the comparative morphology of Recent opossums, emphasizing those anatomical systems from which taxonomically useful information is available for the majority of living genera and species, namely the integument, cranium, and dentition. Morphological similarities and differences among didelphids and other plesiomorphic marsupials (caenolestids, microbiotheriids, dasyurids, and peramelids) are also described. These observations, representing evolved differences in diverse functional-morphological systems, together with karyotypic information gleaned from the literature, provide the basis for coding 129 phylogenetic characters that we scored for 44 ingroup and seven outgroup taxa. Published information about the size, internal organization, chromosomal location, and physiological properties of five nuclear genes (BRCA1, DMP1, IRBP, RAG1, vWF) sequenced for this study suggest that these loci are unlinked, exist as single copies, are active in different tissues, and encode protein products with widely divergent functions. All of the sequenced fragments are long (>900 bp), free of ingroup alignment ambiguities, and translate to open reading frame. Nucleotide data from a total of 7320 aligned sites were obtained from 43 ingroup and seven outgroup taxa. Separate parsimony, likelihood, and Bayesian analyses of these six data partitions (morphology + karyotypes, five genes) resulted in highly congruent estimates of didelphid phylogeny with few examples of conflict among strongly supported nodes. Analyses of concatenated sequences and combined (nonmolecular + sequence) datasets effectively summarize all of the common signal recovered from separate analyses: a completely resolved ingroup phylogeny with high support statistics at most nodes. Remaining problems (not conclusively resolved in this study) include the position of the ingroup root and the relationships of three genera (Chacodelphys, Cryptonanus, Tlacuatzin) within their respective suprageneric clades. The history of didelphid classification is reviewed, and all previous systems are found to contain nonmonophyletic groups. A revised phylogenetic classification consistent with our analytic results includes the following higher taxa: Glironiinae (for Glironia), Caluromyinae (Caluromys and Caluromysiops), Hyladelphinae (Hyladelphys), Didelphinae (Marmosini, Metachirini, Didelphini, and Thylamyini), Marmosini (Marmosa, Monodelphis, and Tlacuatzin), Metachirini (Metachirus), Didelphini (Chironectes, Didelphis, Lutreolina, and Philander), and Thylamyini (Chacodelphys, Cryptonanus, Gracilinanus, Lestodelphys, Marmosops, and Thylamys). The probable relationships of several Neogene fossil genera are also discussed. To facilitate identifications, all Recent genera are redescribed, representative crania are illustrated, and a key is provided.American Museum of Natural History

Marsupials (Didelphimorphia).

87 pages : illustrations (some color), maps ; 26 cm.This report is the third in our monographic series on mammalian diversity and Matses ethnomammalogy in the Yavarí-Ucayali interfluvial region of northeastern Peru. Based on taxonomic analysis of specimens collected in the region, we document the occurrence of 19 species of marsupials in the genera Caluromys, Glironia, Hyladelphys, Marmosa, Monodelphis, Metachirus, Chironectes, Didelphis, Philander, Gracilinanus, and Marmosops. Our principal taxonomic results include the following: (1) we provide a phylogenetic analysis of previously unpublished mitochondrial DNA (mtDNA) sequence data for Caluromys that supports the reciprocal monophyly of all currently recognized species in the genus but reveals substantial heterogeneity in one extralimital taxon; (2) we explain why Marmosa constantiae is the correct name for the southwestern Amazonian taxon previously known as Mar. demerarae, and we diagnose Mar. constantiae from Mar. rapposa, a superficially similar species from southern Peru, eastern Bolivia, and central Brazil; (3) we explain why Mar. rutteri is the correct name for one of the Amazonian species currently known as Mar. regina, and we restrict the latter name to the transAndean holotype; (4) we recognize Metachirus myosuros as a species distinct from Met. nudicaudatus based on morphological comparisons and a phylogenetic analysis of new mtDNA sequence data; and (5) we name a new species of Marmosops to honor the late Finnish-Peruvian naturalist Pekka Soini. Of the 19 marsupial species known to occur in the Yavarí-Ucayali interfluve, 16 have been recorded in sympatry at Nuevo San Juan, the Matses village where we based most of our fieldwork from 1995 to 1999. We explain why we believe the marsupial species list from Nuevo San Juan to be complete (or nearly so), and we compare it with a species list obtained by similarly intensive fieldwork at Paracou (French Guiana). Although Nuevo San Juan and Paracou are 2500 km apart on opposite sides of Amazonia, the same opossum genera are present at both sites, the lists differing only in the species represented in each fauna. We briefly discuss current explanations for spatial turnover in species of terrestrial vertebrates across Amazonian landscapes and provide evidence that the upper Amazon is a significant dispersal barrier for marsupials. Marsupials are not important to the Matses in any way. In keeping with their cultural inattention to mammals that are inconspicuous, harmless, and too small to be of dietary significance, the Matses lexically distinguish only a few kinds of opossums, and they are not close observers of opossum morphology or behavior

Relationships of New World porcupines.

36 p. : ill. (some col.), map ; 26 cm.Phylogenetic analyses of cytochrome-b sequence data from 13 of the 15 currently recognized species of New World porcupines were used to test competing taxonomic hypotheses and to explore scenarios of morphological evolution and biogeography. Consistent with previous studies, the monophyly of Erethizontidae (Chaetomys + Erethizon + Coendou) and the monophyly of Erethizontinae (Erethizon + Coendou) were both strongly supported. However, cytochrome-b sequence data provide no support for the reciprocal monophyly of Coendou, "Echinoprocta," and "Sphiggurus" as those taxa were previously recognized by authors. All of the erethizontid species recognized in recent revisionary work and represented by multiple sequences in this study were recovered as monophyletic groups. Maximum-likelihood (ML) analyses of these data recovered the following phylogeny for 11 species of Coendou: ((melanurus (ichillus (pruinosus + vestitus))) ((spinosus (bicolor + nycthemera)) (prehensilis (mexicanus (quichua + rufescens))))). Ancestral-state reconstructions based on the ML topology suggest that several morphological characters emphasized in past erethizontid classifications (size, nasofrontal sinus inflation, and long fur) have evolved homoplasiously. Maximum-likelihood inference of geographic range evolution suggests that the last common ancestor of living erethizontids was a cis-Andean species, and that most subsequent cladogenesis was also cis-Andean; however, at least two trans-Andean dispersal events are plausibly indicated, as well as two separate invasions of Andean landscapes. Among the most remarkable results of this study are almost-identical sequences of Coendou prehensilis from localities spanning 27° of latitude and 25° of longitude; we speculate that a trophic-niche shift might have allowed rapid range expansion of this species, which accounts for almost all known cases of geographic range overlap and sympatry in the genus Coendou

Contents of Gracilinanus

34 p. : ill. (some col.), map ; 26 cm.Includes bibliographical references (p. 29-30).Five nominal species of small didelphid marsupials previously referred to Gracilinanus differ conspicuously from the type species (G. microtarsus) and from all of the other valid taxa that we recognize as members of that genus (G. aceramarcae, G. agilis, G. dryas, G. emiliae, G. marica). These anomalous forms can be distinguished morphologically from Gracilinanus (in the strict sense just defined) by lacking maxillary palatal vacuities, a secondary foramen ovale, and a rostral process of the premaxillae; in addition, P3 is taller than P2, and accessory cusps are often present on C1. A new genus, Cryptonanus, is described to contain these forms, all of which are provisionally recognized as valid species: C. agricolai, C. chacoensis, C. guahybae, C. ignitus, and C. unduaviensis. Separate and combined phylogenetic analyses of nonmolecular data and nuclear gene sequences suggest that Cryptonanus and Gracilinanus (sensu stricto) are reciprocally monophyletic and closely related, although they were not consistently recovered as sister taxa in any analysis. Available specimen records document that Cryptonanus is widely distributed in mostly unforested tropical, subtropical, and temperate biomes south of the Amazon River (from ca. 7°S in the Brazilian state of Ceará to ca. 34°S in the Argentinian province of Buenos Aires), but significant range extensions could be expected from pitfall trapping in extralimital savanna landscapes. Scant field data suggest that species of Cryptonanus may often be associated with wet or seasonally inundated grasslands, an unusual habitat for small didelphids

Tests for Positive Selection on Immune and Reproductive Genes in Closely Related Species of the Murine Genus Mus

AbstractPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/42372/1/30560294.pd

Relationships of Marmosa formosa

18 p. : ill. (some col.) ; 26 cm.Includes bibliographical references (p. 16-17).The holotype and only known specimen of Marmosa formosa Shamel, a nominal species currently synonymized with Gracilinanus agilis Burmeister, is strikingly unlike any other known didelphid marsupial. Phylogenetic analyses based on nonmolecular characters and IRBP sequences suggest that formosa is either the sister-taxon of Thylamys (including Lestodelphys) or Monodelphis. Because neither alternative is strongly supported by the data at hand, and because including formosa in Thylamys or in Monodelphis would compromise the diagnosability of those taxa, a new genus--Chacodelphys--is proposed to contain it. Currently known only from northern Argentina, Chacodelphys formosa may be widely distributed in the Chaco and other adjacent Neotropical biomes

Didelphid marsupial genus Thylamys.

67 p. : ill. (1 col.), maps (some col.) ; 26 cm. "Issued December 16, 2010."Species of the didelphid marsupial genus Thylamys, commonly known as fat-tailed mouse opossums, are broadly distributed in the open habitats of central and southern South America. In this report we examine species limits in the genus and infer phylogenetic relationships among Thylamys species using both molecular phylogenetic and morphological methods. We assessed species limits using a broad geographic sample of DNA sequences from the mitochondrial gene cytochrome b in conjunction with morphological character analysis, and we inferred phylogenetic relationships among species using the cytochrome-b dataset in addition to sequences from the mitochondrial genes cytochrome c oxidase subunit II and NADH dehydrogenase 2 for a representative subset of individuals. Based on the results of these analyses, we recognize Xerodelphys (new subgenus) for T. karimii and T. velutinus, and we recognize seven valid species in the nominotypical subgenus. The latter includes T. macrurus, T. pusillus, and two monophyletic species groups: the Elegans Group (T. elegans, T. pallidior, T. tatei) and the Venustus Group (T. sponsorius, T. venustus). Analysis of cytochrome-b sequences additionally reveals deep phylogeographic structuring in three species (T. pallidior, T. pusillus, T. venustus), each of which contains two or three robustly supported allopatric haplogroups. The existence of undescribed Peruvian forms of the Elegans Group is also plausibly indicated. We provide morphological diagnoses of all species recognized as valid in this report, summarize information about geographic distributions, comment on previous misidentifications, and briefly consider historical-biogeographic scenarios with a focus on dispersal events across the Andes

P. quica, P. canus, and a new species from Amazonia.

70 pages : illustrations (some color), maps (some color) ; 26 cm. "Appendix 5. On the type locality of Didelphys frenata Olfers, 1818 / Robert S. Voss and Renate Angermann": pages 69-70.This is the first installment of a revision of the didelphid marsupial genus Philander, commonly known as gray four-eyed opossums. Although abundant and widespread in lowland tropical forests from southern Mexico to northern Argentina, species of Philander are not well understood taxonomically, and the current literature includes many examples of conflicting species definitions and nomenclatural usage. Our revision is based on coalescent analyses of mitochondrial gene sequences, phylogenetic analyses of mitochondrial and nuclear genes, morphometric analyses, and firsthand examination of relevant type material. Based on these results, we provisionally recognize eight species, of which three are formally treated in this report: P. quica (Temminck, 1824), an Atlantic Forest endemic formerly known as P. frenatus (Olfers, 1818); P. canus (Osgood, 1913), a widespread species formerly treated as a synonym or subspecies of P. opossum (Linnaeus, 1758); and P. pebas, a new species endemic to Amazonia. The remaining, possibly valid, species of Philander can be allocated to two clades. The first is a cis-Andean complex that includes P. andersoni (Osgood, 1913); P. mcilhennyi Gardner and Patton, 1972; and P. opossum. The second is a trans-Andean complex that includes P. melanurus (Thomas, 1899) and P. pallidus (Allen, 1901). Among other nomenclatural acts, we designate a neotype for the long-problematic nominal taxon Didelphis superciliaris Olfers, 1818, and (in an appendix coauthored by Renate Angermann), we establish that Olfers' coeval binomen D. frenata is based on an eastern Amazonian type and is a junior synonym of P. opossum

Adaptive Evolution of the Venom-Targeted vWF Protein in Opossums that Eat Pitvipers

The rapid evolution of venom toxin genes is often explained as the result of a biochemical arms race between venomous animals and their prey. However, it is not clear that an arms race analogy is appropriate in this context because there is no published evidence for rapid evolution in genes that might confer toxin resistance among routinely envenomed species. Here we report such evidence from an unusual predator-prey relationship between opossums (Marsupialia: Didelphidae) and pitvipers (Serpentes: Crotalinae). In particular, we found high ratios of replacement to silent substitutions in the gene encoding von Willebrand Factor (vWF), a venom-targeted hemostatic blood protein, in a clade of opossums known to eat pitvipers and to be resistant to their hemorrhagic venom. Observed amino-acid substitutions in venom-resistant opossums include changes in net charge and hydrophobicity that are hypothesized to weaken the bond between vWF and one of its toxic snake-venom ligands, the C-type lectin-like protein botrocetin. Our results provide the first example of rapid adaptive evolution in any venom-targeted molecule, and they support the notion that an evolutionary arms race might be driving the rapid evolution of snake venoms. However, in the arms race implied by our results, venomous snakes are prey, and their venom has a correspondingly defensive function in addition to its usual trophic role

Contributions in honor of Guy G. Musser.

450 p. : ill. (some col.), maps ; 26 cm. "Issued December 15, 2009." Includes bibliographical references.Contents: They sort out like nuts and bolts : a scientific biography of Guy G. Musser / Michael D. Carleton -- Taxonomy, distribution, and natural history of the genus Heteromys ‪(‬Rodentia: Heteromyidae‪)‬ in central and eastern Venezuela, with the description of a new species from the Cordillera de la Costa / Robert P. Anderson and Eliécer E. Gutiérrez -- Review of the Oryzomys couesi complex ‪(‬Rodentia: Cricetidae: Sigmodontinae‪)‬ in western Mexico / Michael D. Carleton and Joaquin Arroyo-Cabrales -- The antiquity of Rhizomys and independent acquisition of fossorial traits in subterranean muroids / Lawrence J. Flynn -- A new species of Reithrodontomys, subgenus Aporodon ‪(‬Cricetidae: Neotominae‪)‬, from the highlands of Costa Rica, with comments on Costa Rican and Panamanian Reithrodontomys / Alfred L. Gardner and Michael D. Carleton -- Phylogenetic relationships of harpyionycterine megabats ‪(‬Chiroptera: Pteropodidae‪)‬ / Norberto P. Giannini, Francisca Cunha Almeida, and Nancy B. Simmons -- A new genus and species of small ‪"‬tree-mouse‪"‬ ‪(‬Rodentia, Muridae‪)‬ related to the Philippine giant cloud rats / Lawrence R. Heaney, Danilo S. Balete, Eric A. Rickart, M. Josefa Veluz, and Sharon A. Jansa -- Biodiversity and biogeography of the moss-mice of New Guinea : a taxonomic revision of Pseudohydromys ‪(‬Muridae: Murinae‪)‬ / Kristofer M. Helgen and Lauren E. Helgen -- Systematic revision of sub-Saharan African dormice ‪(‬Rodentia: Gliridae‪)‬. Part 2, Description of a new species of Graphiurus from the central Congo Basin, including morphological and ecological niche comparisons with G. crassicaudatus and G. lorraineus / Mary Ellen Holden and Rebecca S. Levine -- Descriptions of new species of Crocidura ‪(‬Soricomorpha: Soricidae‪)‬ from mainland Southeast Asia, with synopses of previously described species and remarks on biogeography / Paulina D. Jenkins, Darrin P. Lunde, and Clive B. Moncrieff -- The six opossums of Félix de Azara : identification, taxonomic history, neotype designations, and nomenclatural recommendations / Robert S. Voss, Philip Myers, François Catzeflis, Ana Paula Carmignotto, and Josefina Barreiro -- Skull and dentition of Willeumys korthi, nov. gen. et sp., a cricetid rodent from the Oligocene ‪(‬Orellan‪)‬ of Wyoming / John H. Wahlert