The Physiology and Pathology of Heat Stress in Australian Desert Birds

Arid environments pose a unique set of challenges to organisms. These challenges include the lack of basic resources such as food and water, as well as extremes in temperatures. Birds are small flying endotherms that maintain high body temperatures close to lethal limits, which is advantageous in hot climates. However, as global temperatures increase, birds need to be able to respond to weather changes quickly and appropriately for their own well-being and survival. The inability to respond appropriately to heatwaves can be fatal to individual birds and translate into large-scale mortality events. As there were gaps in the current knowledge regarding the physiological stress responses and behavioural adaptations of Australian desert birds to high ambient temperatures, I designed and conducted separate studies to investigate these responses. I found that the corticosterone (CORT) and heterophil:lymphocyte (H:L) ratio responses of budgerigars (Melopsittacus undulatus), zebra finches (Taeniopygia guttata) and diamond doves (Geopelia cuneata) to heat exposures were different. These species differences may reflect their ability to detect and adapt to high temperatures. There was also no significant correlation found between the change in CORT and H:L ratios, which may reflect differences in the timescales of these responses. Based on the species differences in CORT response, I hypothesized that there would also be differences in the behavioural response to high ambient temperatures, as CORT has effects on the behaviour of birds. Observation of eight species of birds at the Adelaide Zoo confirmed my hypothesis. Psittaciform birds spent less time feeding and more time resting in cooler microsites during hot periods. Columbiform birds continued feeding and spent more time in the sun during hot periods rather than resting in cooler microsites. White-Browed Woodswallows, the only passerine species assessed, spent a significantly lower proportion of time on stationary behaviours and higher proportion of time feeding compared to the other species. The smallest birds in the study, they also utilised wing venting more than other species of birds, possibly because it is more important for them to conserve water. These results suggest that columbiform birds may have an advantage during heatwaves as they can continue feeding through high ambient temperatures, as long as there is adequate access to food and water. When physiological and behavioural adaptations are unable to prevent birds from maintaining their body temperatures below lethal limits, pathological changes are expected. There is currently very little documentation of these pathological changes in the literature, which makes diagnosis of heat injuries in birds difficult. I examined the histopathological changes in the organs of the birds from the CORT and H:L ratio study and found that the main changes were in the lungs and liver, albeit to different degrees and frequencies in different species. There were also changes in the hearts, kidneys and gastrointestinal tracts of some birds, but these were less frequently observed. Having established there are species differences in how birds respond physiologically, behaviourally and pathologically when exposed to heat, I then sought to further characterize these responses and adaptations at a molecular level. I selected genes of interest and measured the mRNA expression of these genes in the organs of the birds from the CORT/H:L study. The results revealed that acute exposure of native Australian birds to high temperatures (45°C) would result in upregulation heat shock protein (hsp) genes, but there was no significant upregulation of other genes with protective effects against cell damage (BCL-2 and VEGFA) nor genes associated with inflammation (interleukins). There was also no downregulation of the genes involved in the coagulation pathway (fibrinogen) in these birds. The gastrointestinal tracts of all 3 bird species had the highest number of hsp genes upregulated, possibly indicating that this is the organ that requires the most protection to continue its function. Diamond dove organs also had the highest number of hsp genes upregulated, possibly a reflection of their ability to protect their cells better during high temperatures. The findings from my thesis have filled in gaps in the current knowledge regarding the physiological stress and behavioural responses of Australian desert birds to high ambient temperatures. I have also found clinical and histopathological changes in birds exposed to varying degrees of heat, which can be used to help diagnosis of heat injuries in birds. These findings have also revealed that there are important differences in the ways different species of birds respond to heat and that there is no single strategy that can be applied to help all birds survive the effects of climate change. Instead, it is important to identify the challenges each species may face and apply the correct strategy to the species in question in order to maximize the benefit of any intervention. For example, given the low heat tolerance and reliance on the availability of cool microsites for refuge of psittacine birds, the most important conservation strategy for them may be the conservation of microsite refuges in the desert. Furthermore, birds that can tolerate very high environmental temperatures, e.g. columbiform birds, may hold secrets that can be uncovered with further research. These may include deep sequencing molecular genetic techniques such as RNAseq, with a focus on heat shock proteins. Further understanding of the genetic adaptations required to confer high tolerances to heat will also allow better identification of vulnerable species of birds, so that appropriate resources can be allocated to helping them survive the effects of climate change proactively rather retrospectively.Thesis (Ph.D.) -- University of Adelaide, School of Animal & Veterinary Sciences, 201

NeRF--: Neural Radiance Fields without known camera parameters

Considering the problem of novel view synthesis (NVS) from only a set of 2D images, we simplify the training process of Neural Radiance Field (NeRF) on forward-facing scenes by removing the requirement of known or pre-computed camera parameters, including both intrinsics and 6DoF poses. To this end, we propose NeRF−−, with three contributions: First, we show that the camera parameters can be jointly optimised as learnable parameters with NeRF training, through a photometric reconstruction; Second, to benchmark the camera parameter estimation and the quality of novel view renderings, we introduce a new dataset of path-traced synthetic scenes, termed as Blender Forward-Facing Dataset (BLEFF); Third, we conduct extensive analyses to understand the training behaviours under various camera motions, and show that in most scenarios, the joint optimisation pipeline can recover accurate camera parameters and achieve comparable novel view synthesis quality as those trained with COLMAP pre-computed camera parameters. Our code and data are available at https://nerfmm.active.vision

A Critical Review on the Pharmacodynamics and Pharmacokinetics of Non-steroidal Anti-inflammatory Drugs and Opioid Drugs Used in Reptiles

10.1016/j.vas.2022.100267VETERINARY AND ANIMAL SCIENCE1

A Critical Review of the Pharmacokinetics, Pharmacodynamics, and Safety Data of Antibiotics in Avian Species

10.3390/antibiotics11060741ANTIBIOTICS-BASEL11

The use of a 3D-printed prosthesis in a Great Hornbill (Buceros bicornis) with squamous cell carcinoma of the casque

10.1371/journal.pone.0220922PLOS ONE14

The use of a 3D-printed prosthesis in a Great Hornbill (Buceros bicornis) with squamous cell carcinoma of the casque.

The advent of new technologies in medical imaging and 3D printing in recent years has made customization of surgical tools and implants more accessible, revolutionizing many surgical fields. In many human diseases, these implants have led to superior surgical outcomes and greatly improved patients' quality of life. Thus, it is of great interest to apply these technologies to the treatment of animal diseases. In this study, we report the use of computed tomography (CT) and 3D printing for the treatment of a Great Hornbill at Jurong Bird Park that was diagnosed with squamous cell carcinoma of the casque. A 3D printed prosthesis that perfectly fitted the subject was implanted to replace its resected casque. The subject exhibited natural eating behaviour with no post-operative complications. Using this case as an example, the positive outcomes suggest a great potential in applying these technologies to the treatment of other wildlife diseases