Fire Effects on Soil Properties: Amending Post-Fire Soils with Native Microbial Communities and Biochar to Improve Sagebrush Performance

Within the sagebrush steppe, fire has been shown to affect biogeochemical properties and the microbial community composition in soils. However, there is uncertainty about the magnitude and direction of these effects, since they vary by sites that differ in abiotic and biotic conditions. Moreover, differences in post-fire management strategies are likely to mediate the effect of fire on soil properties, thus further compounding this uncertainty. Any changes in soil biogeochemical properties following fire can prevent successful restoration of Artemisia tridentata sp. wyomingensis (sagebrush), leading to variable outcomes of restoration success in the sagebrush steppe. Previous research has shown that addition of native soil microbes and biochar can improve ecosystem restoration efforts, but the effects of these soil amendments on post-fire soil properties and sagebrush performance across sites are uncertain. With this study, I investigated how fire impacts soil properties (i.e., soil organic matter (SOM), soil structure, carbon (C) and nitrogen (N) concentrations, soil pH, net mineral N, microbial richness and composition) at a variety of sites that differ in time since exposure to fire, post-fire plant communities, and post-fire site management. I then implemented a greenhouse study to evaluate how amending soils with native microbial community inocula and biochar impact soil properties of the post-burn sites and sagebrush germination and growth. Taken together, these findings capture the influences of multiple fires and separate management strategies on soil properties, and how certain soil amendments may redirect soil recovery to aid in sagebrush restoration. In my first chapter, I asked two questions: (1) how does fire affect soil biochemical properties across sites that differ in fire history, post-fire plant communities, and post-fire site management, and (2) how does fire affect soil microbial richness and community composition across sites that differ in post-fire plant communities, and post-fire site management. To assess these questions, soils were collected from three south of Boise, Idaho within the Orchard Combat Training Center (OCTC) that contrasted in fire history, plant community, and post-fire management. The northern part of the Union Fire (180 acres; hereafter: UFN2011) burned in 2011, and was treated with a mix of imazapic and glyphosate during the spring of 2019, after which sagebrush was handplanted 8 months later that yea. The southern part of the Union Fire (160 acres; hereafter: UFS2011) burned in 2011 and seeded with native grass species and planted with sagebrush. The Christmas Fire (hereafter: CF2018) burned in 2018, and was subjected to the same seeding and handplanting treatments as UFS2011. At each site, I selected five locations within the perimeter of the burn, and five locations outside the burn, representing the unburned control plots. In these unburned control plots, the five locations were stratified by sagebrush canopy and interspace microsites separately. At each one of the five locations, I collected four soil cores (10cm depth, 2.5cm diameter). I evaluated differences in soil pH, soil organic matter (SOM), soil carbon (C) and nitrogen (N) contents, soil structure, N cycling, and soil microbial communities between burned and unburned sites. Fire reduced SOM and soil C contents, and these losses were greater in burned areas that received an herbicide treatment. This suggests that suppression of plant growth using herbicides may limit the recovery of soil properties that are foundational to sagebrush steppe ecosystem functioning. Furthermore, I found a loss of arbuscular mycorrhizal fungi (AMF) richness with fire and significant changes in soil microbial community structure when herbicide had been used. Finally, increased soil mineral N concentrations across all burned sites indicate that fire may significantly reduce ecosystem stability and increase the risk of invasion. These changes in soil properties are likely to lead to a persistent ecosystem state-changes in the sagebrush steppe, and future studies should evaluate which management approaches could be used to restore both soils and plant communities. In my second chapter, I investigated two management approaches that may be used to restore the soils and plant communities impacted by fire. I asked (1) How does a live native soil microbial inoculum impact sagebrush performance and soil properties, (2) how do biochar additions impact sagebrush performance and soil properties, and (3) how does prior management (e.g., herbicide) mediate the impact of soil microbial inoculation and biochar amendment on sagebrush performance? A full factorial greenhouse experiment was conducted for three months with soils collected from the three post-burn sites described in Chapter 1. In the greenhouse experiment I incorporated the following treatments: (1) sterile native inoculum [-Inoculum] and no biochar [-Biochar], (2) live native inoculum [+Inoculum] and no biochar [-Biochar], (3) sterile native inoculum [-Inoculum] and biochar [+Biochar], and (4) live native inoculum [+Inoculum] and biochar [+Biochar]. Inocula was derived from sagebrush canopies at unburned sites and either added as live native inocula or autoclaved to sterilize the microbial community. Biochar was crushed into planted, watered daily until cotyledons showed, and continually monitored throughout the growing period. Germination, soil moisture content and pH, above- and below-ground measurements, total mineral N, fungal root colonization proportional abundances, and microbial richness and composition were assessed. I found that inoculations did not significantly benefit sagebrush performance, most likely due to the ratio of inocula administered. In contrast, biochar consistently enhanced soil moisture, pH, sagebrush germination and other performance variables while its effects on total mineral N and fungal root colonization varied by site location. Lastly, presence of herbicide in post-burn soils significantly altered soil bacterial and fungal community composition, and its effects persisted enough to inhibit sagebrush performance. Together, my data show that addition of biochar has a greater positive impact on sagebrush germination and performance than addition of soil microbial inocula, and that herbicide addition has persistent negative impacts on sagebrush performance. My study captured the varying levels at which fire impacts ecosystem structure and function, and how different soil amendments affected sagebrush performance at these post-fire soils. My findings support the notion that soil properties will remain degraded without appropriate management strategies supporting restoration, and herbicide may actually suppress successful restoration, residing longer in the soil than previously documented. When growing sagebrush in post-burn soils within the greenhouse, biochar enabled soil recovery, and this benefited sagebrush performance. However, herbicide impacts persisted and decreased sagebrush biomass even when soil amendments were incorporated. Fire can have profound, yet vastly different, influences on soil properties, and soil amendments may be able to augment soil recovery. Future studies should investigate various soil amendments and their impacts on sagebrush performance in the midst of changing fire regimes, post-fire vegetation shifts, and current post-fire management

Uso de misoprostal na gestação : riscos embrio-fetais

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Electroporated Antigen-Encoding mRNA Is Not a Danger Signal to Human Mature Monocyte-Derived Dendritic Cells

For therapeutic cancer vaccination, the adoptive transfer of mRNA-electroporated dendritic cells (DCs) is frequently performed, usually with monocyte-derived, cytokine-matured DCs (moDCs). However, DCs are rich in danger-sensing receptors which could recognize the exogenously delivered mRNA and induce DC activation, hence influencing the DCs’ immunogenicity. Therefore, we examined whether electroporation of mRNA with a proper cap and a poly-A tail of at least 64 adenosines had any influence on cocktail-matured moDCs. We used 16 different RNAs, encoding tumor antigens (MelanA, NRAS, BRAF, GNAQ, GNA11, and WT1), and variants thereof. None of those RNAs induced changes in the expression of CD25, CD40, CD83, CD86, and CD70 or the secretion of the cytokines IL-8, IL-6, and TNFα of more than 1.5-fold compared to the control condition, while an mRNA encoding an NF-κB-activation protein as positive control induced massive secretion of the cytokines. To determine whether mRNA electroporation had any effect on the whole transcriptome of the DCs, we performed microarray analyses of DCs of 6 different donors. None of 60,000 probes was significantly different between mock-electroporated DCs and MelanA-transfected DCs. Hence, we conclude that no transcriptional programs were induced within cocktail-matured DCs by electroporation of single tumor-antigen-encoding mRNAs

Generation of an Oncolytic Herpes Simplex Virus 1 Expressing Human MelanA

Robust anti-tumor immunity requires innate as well as adaptive immune responses. We have shown that plasmacytoid dendritic cells develop killer cell-like activity in melanoma cell cocultures after exposure to the infectious but replication-deficient herpes simplex virus 1 (HSV-1) d106S. To combine this innate effect with an enhanced adaptive immune response, the gene encoding human MelanA/MART-1 was inserted into HSV-1 d106S via homologous recombination to increase direct expression of this tumor antigen. Infection of Vero cells using this recombinant virus confirmed MelanA expression by Western blotting, flow cytometry, and immunofluorescence. HSV-1 d106S-MelanA induced expression of the transgene in fibroblast and melanoma cell lines not naturally expressing MelanA. Infection of a melanoma cell line with CRISPR-Cas9-mediated knockout of MelanA confirmed de novo expression of the transgene in the viral context. Dependent on MelanA expression, infected fibroblast and melanoma cell lines induced degranulation of HLA-matched MelanA-specific CD8+ T cells, followed by killing of infected cells. To study infection of immune cells, we exposed peripheral blood mononuclear cells and in vitro-differentiated macrophages to the parental HSV-1 d106S, resulting in expression of the transgene GFP in CD11c+ cells and macrophages. These data provide evidence that the application of MelanA-encoding HSV-1 d106S could enhance adaptive immune responses and re-direct MelanA-specific CD8+ T cells to tumor lesions, which have escaped adaptive immune responses via downregulation of their tumor antigen. Hence, HSV-1 d106S-MelanA harbors the potential to induce innate immune responses in conjunction with adaptive anti-tumor responses by CD8+ T cells, which should be evaluated in further studies

Avaliação da medida translucência nucal em gestantes de risco

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Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

A meta-analytic investigation of subject-specific admission tests in German-speaking countries

Das Interesse an Kriterien und eignungsdiagnostischen Verfahren zur Auswahl von Studierenden im Rahmen der Hochschulzulassung hat in den vergangenen Jahren im deutschsprachigen Raum stark zugenommen. Neben Schulnoten und Auswahlgesprächen kommen insbesondere Studierfähigkeitstests als Auswahlinstrument in Frage. Der Beitrag fasst die seit 1980 publizierten Ergebnisse zur Validität von studienfachspezifischen Studierfähigkeitstests nur den Studienerfolg im Sinne von Studiennoten zusammen. Insgesamt konnten K = 36 unabhängige Stichproben zusammengetragen werden, die addiert einen kumulierten Primärstudien-Stichprobenumfang von 45 091 Personen ergeben. Die Validität der Studierfähigkeitstests wird durch das Studienfach, den Studienabschnitt und die Heterogenität der Stichprobe moderiert. Für alle untersuchten Studienfächer kann eine positive Validität der fachspezifischen Studierfähigkeitstests generalisiert werden. Die höchste Validität wird im Studiengang Humanmedizin erreicht (ρ = .507), gefolgt den Studiengängen Veterinärmedizin (ρ = .431), Zahnmedizin (ρ = .353) und Wirtschaftswissenschaften (ρ = .325). Weiterer Forschungsbedarf besteht hinsichtlich der Prädiktion der Erfolgskriterien Studienabbruch, Studiendauer und Studienzufriedenheit

The Validity of School Grades for Academic Achievement A Meta-Analysis

Although school grades are often criticized and universities in Germany are now allowed to use other criteria of selection, high school grades are still used most often to admit students to university. The present meta-analysis includes all European studies that have been published since 1980 and investigated the relationship between school grades and university grades (altogether 83 coefficients). Grade point average and individual subject grades were accepted as predictors. The mean corrected validity for school grades ranges from .26 to .53, using undergraduate or graduate grades to measure academic success. Highest validity was found for German grade point average (ρ = .53, corrected). Analyses of moderator-effects show significant influences of country of origin, study major, time between school and university grades, and study period. The computed validity coefficients for school grades are positive and different from zero