PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

PhenomiR is a comprehensive database of 542 studies reporting deregulation of miRNAs allowing large-scale statistical analysis of miRNA expression changes

The New Volcanic Ash Satellite Retrieval VACOS Using MSG/SEVIRI and Artificial Neural Networks: 1. Development

Volcanic ash clouds are a threat to air traffic security and, thus, can have significant societal and financial impact. Therefore, the detection and monitoring of volcanic ash clouds to enhance the safety of air traffic is of central importance. This work presents the development of the new retrieval algorithm VACOS (Volcanic Ash Cloud properties Obtained from SEVIRI) which is based on artificial neural networks, the thermal channels of the geostationary sensor MSG/SEVIRI and auxiliary data from a numerical weather prediction model. It derives a pixel classification as well as cloud top height, effective particle radius and, indirectly, the mass column concentration of volcanic ash clouds during day and night. A large set of realistic one-dimensional radiative transfer calculations for typical atmospheric conditions with and without generic volcanic ash clouds is performed to create the training dataset. The atmospheric states are derived from ECMWF data to cover the typical diurnal, annual and interannual variability. The dependence of the surface emissivity on surface type and viewing zenith angle is considered. An extensive dataset of volcanic ash optical properties is used, derived for a wide range of microphysical properties and refractive indices of various petrological compositions, including different silica contents and glass-to-crystal ratios; this constitutes a major innovation of this retrieval. The resulting ash-free radiative transfer calculations at a specific time compare well with corresponding SEVIRI measurements, considering the individual pixel deviations as well as the overall brightness temperature distributions. Atmospheric gas profiles and sea surface emissivities are reproduced with a high agreement, whereas cloudy cases can show large deviations on a single pixel basis (with 95th percentiles of the absolute deviations > 30 K), mostly due to different cloud properties in model and reality. Land surfaces lead to large deviations for both the single pixel comparison (with median absolute deviations > 3 K) and more importantly the brightness temperature distributions, most likely due to imprecise skin temperatures. The new method enables volcanic ash-related scientific investigations as well as aviation security-related applications

Chancengerechtigkeit durch Bildung – Chancengerechtigkeit in der Bildung (Auszug)

Der hier mit freundlicher Genehmigung des AWO Bundesverbands abgedruckte Text ist ein Auszug aus der Broschüre: Arbeiterwohlfahrt Bundesverband (Hrsg.): Standpunkte 2006. Chancengerechtigkeit durch Bildung – Chancengerechtigkeit in der Bildung, Bonn 2006. Unser Bildungssystem für die Kinder im Alter von 6 bis 16 Jahren wird den Herausforderungen der Zukunft nicht gerecht. Ein Umsteuern ist dringend notwendig, da ohne Bildung der Wandel in die Wissensgesellschaft nicht zu bewältigen ist. Bildung, Qualifikation und Kompetenzen und das Erlernen von Diskurs- und Konfliktfähigkeit entscheiden über die beruflichen und gesellschaftlichen Chancen eines jeden Menschen und davon abhängig über seine Zukunftschancen. Bildung bedeutet Entwicklung der Persönlichkeit, der Identität. Bildung bedeutet aber auch, die gemeinschaftsfähige Persönlichkeit zu gestalten. Und somit bekommt Bildung gerade in der Lebensphase der 6- bis 16-Jährigen über die eher traditionelle Dimension hinaus auch einen emanzipatorischen Charakter. Wenn Bildung also für den Einzelnen diese entscheidende Rolle spielt, dann bekommt die öffentliche Verantwortung für dieses Bildungswesen eine ganz zentrale Bedeutung. (DIPF/Orig.

VADUGS: a neural network for the remote sensing of volcanic ash with MSG/SEVIRI trained with synthetic thermal satellite observations simulated with a radiative transfer model

After the eruption of volcanoes around the world, monitoring of the dispersion of ash in the atmosphere is an important task for satellite remote sensing since ash represents a threat to air traffic. In this work we present a novel method, tailored for Eyjafjallajökull ash but applicable to other eruptions as well, that uses thermal observations of the SEVIRI imager aboard the geostationary Meteosat Second Generation satellite to detect ash clouds and determine their mass column concentration and top height during the day and night. This approach requires the compilation of an extensive data set of synthetic SEVIRI observations to train an artificial neural network. This is done by means of the RTSIM tool that combines atmospheric, surface and ash properties and runs automatically a large number of radiative transfer calculations for the entire SEVIRI disk. The resulting algorithm is called "VADUGS" (Volcanic Ash Detection Using Geostationary Satellites) and has been evaluated against independent radiative transfer simulations. VADUGS detects ash-contaminated pixels with a probability of detection of 0.84 and a false-alarm rate of 0.05. Ash column concentrations are provided by VADUGS with correlations up to 0.5, a scatter up to 0.6 g m-2 for concentrations smaller than 2.0 g m-2 and small overestimations in the range 5 %-50 % for moderate viewing angles 35-65°, but up to 300 % for satellite viewing zenith angles close to 90 or 0°. Ash top heights are mainly underestimated, with the smallest underestimation of -9 % for viewing zenith angles between 40 and 50°. Absolute errors are smaller than 70 % and with high correlation coefficients of up to 0.7 for ash clouds with high mass column concentrations. A comparison with spaceborne lidar observations by CALIPSO/CALIOP confirms these results: For six overpasses over the ash cloud from the Puyehue-Cordón Caulle volcano in June 2011, VADUGS shows similar features as the corresponding lidar data, with a correlation coefficient of 0.49 and an overestimation of ash column concentration by 55 %, although still in the range of uncertainty of CALIOP. A comparison with another ash algorithm shows that both retrievals provide plausible detection results, with VADUGS being able to detect ash further away from the Eyjafjallajökull volcano, but sometimes missing the thick ash clouds close to the vent. VADUGS is run operationally at the German Weather Service and this application is also presented

Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways

MicroRNAs are a large class of post-transcriptional regulators that bind to the 3′ untranslated region of messenger RNAs. They play a critical role in many cellular processes and have been linked to the control of signal transduction pathways. Recent studies indicate that microRNAs can function as tumor suppressors or even as oncogenes when aberrantly expressed. For more general insights of disease-associated microRNAs, we analyzed their impact on human signaling pathways from two perspectives. On a global scale, we found a core set of signaling pathways with enriched tissue-specific microRNA targets across diseases. The function of these pathways reflects the affinity of microRNAs to regulate cellular processes associated with apoptosis, proliferation or development. Comparing cancer and non-cancer related microRNAs, we found no significant differences between both groups. To unveil the interaction and regulation of microRNAs on signaling pathways locally, we analyzed the cellular location and process type of disease-associated microRNA targets and proteins. While disease-associated proteins are highly enriched in extracellular components of the pathway, microRNA targets are preferentially located in the nucleus. Moreover, targets of disease-associated microRNAs preferentially exhibit an inhibitory effect within the pathways in contrast to disease proteins. Our analysis provides systematic insights into the interaction of disease-associated microRNAs and signaling pathways and uncovers differences in cellular locations and process types of microRNA targets and disease-associated proteins

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.

X chromosomes are unusual in many regards, not least of which is their nonrandom gene content. The causes of this bias are commonly discussed in the context of sexual antagonism and the avoidance of activity in the male germline. Here, we examine the notion that, at least in some taxa, functionally biased gene content may more profoundly be shaped by limits imposed on gene expression owing to haploid expression of the X chromosome. Notably, if the X, as in primates, is transcribed at rates comparable to the ancestral rate (per promoter) prior to the X chromosome formation, then the X is not a tolerable environment for genes with very high maximal net levels of expression, owing to transcriptional traffic jams. We test this hypothesis using The Encyclopedia of DNA Elements (ENCODE) and data from the Functional Annotation of the Mammalian Genome (FANTOM5) project. As predicted, the maximal expression of human X-linked genes is much lower than that of genes on autosomes: on average, maximal expression is three times lower on the X chromosome than on autosomes. Similarly, autosome-to-X retroposition events are associated with lower maximal expression of retrogenes on the X than seen for X-to-autosome retrogenes on autosomes. Also as expected, X-linked genes have a lesser degree of increase in gene expression than autosomal ones (compared to the human/Chimpanzee common ancestor) if highly expressed, but not if lowly expressed. The traffic jam model also explains the known lower breadth of expression for genes on the X (and the Z of birds), as genes with broad expression are, on average, those with high maximal expression. As then further predicted, highly expressed tissue-specific genes are also rare on the X and broadly expressed genes on the X tend to be lowly expressed, both indicating that the trend is shaped by the maximal expression level not the breadth of expression per se. Importantly, a limit to the maximal expression level explains biased tissue of expression profiles of X-linked genes. Tissues whose tissue-specific genes are very highly expressed (e.g., secretory tissues, tissues abundant in structural proteins) are also tissues in which gene expression is relatively rare on the X chromosome. These trends cannot be fully accounted for in terms of alternative models of biased expression. In conclusion, the notion that it is hard for genes on the Therian X to be highly expressed, owing to transcriptional traffic jams, provides a simple yet robustly supported rationale of many peculiar features of X's gene content, gene expression, and evolution

Development and application of a high speed digital data acquisition technique to study steam bubble collapse using particle image velocimetry

Due to the character of the original source materials and the nature of batch digitization, quality control issues may be present in this document. Please report any quality issues you encounter to [email protected], referencing the URI of the item.Includes bibliographical references.Not availabl

KulikDM/pythresh: v0.3.5

<h2>What's Changed</h2> <ul> <li>Upgraded RANK and docs</li> <li>Added CONF for OD confidence</li> <li>Added CONF docs and updated FAQ</li> </ul&gt