Transport and drift-driven plasma flow components in the Alcator C-Mod boundary plasma

Boundary layer flows in the Alcator C-Mod tokamak are systematically examined as magnetic topology (upper versus lower-null) and plasma density are changed. Utilizing a unique set of scanning Langmuir–Mach probes, including one on the high-field side (HFS) midplane, the poloidal variation of plasma flow components in the parallel, diamagnetic and radial directions are resolved in detail. It is found that the plasma flow pattern can be decomposed into two principal parts: (1) a drift-driven component, which lies within a magnetic flux surface and is divergence-free and (2) a transport-driven component, which gives rise to near-sonic parallel flows on the HFS scrape-off layer (SOL). Toroidal rotation, Pfirsch–Schlüter and transport-driven contributions are unambiguously identified. Transport-driven parallel flows are found to dominate the HFS particle fluxes; the total poloidal-directed flow accounts for ~1/3 to all of the ion flux arriving on the inner divertor. As a result, heat convection is found to be an important player in this region, consistent with the observation of divertor asymmetries that depend on the direction of B × ∇B relative to the active x-point. In contrast, the poloidal projection of parallel flow in the low-field SOL largely cancels with E[subscript r] × B flow; toroidal rotation is the dominant plasma motion there. The magnitude of the transport-driven poloidal flow is found to be quantitatively consistent with fluctuation-induced radial particle fluxes on the low-field side (LFS), identifying this as the primary drive mechanism. Fluctuation-induced fluxes on the HFS are found to be essentially zero, excluding turbulent inward transport as the mechanism that closes the circulation loop in this region.United States. Dept. of Energy (Cooperative Agreement DE-FC02-99ER54512

Programmer's guide for LIFE2's rainflow counting algorithm

The LIFE2 computer code is a fatique/fracture analysis code that is specialized to the analysis of wind turbine components. The numerical formulation of the code uses a series of cycle count matrices to describe the cyclic stress states imposed upon the turbine. In this formulation, each stress cycle is counted or binsed'' according to the magnitude of its mean stress and alternating stress components and by the operating condition of the turbine. A set of numerical algorithms has been incorporated into the LIFE2 code. These algorithms determine the cycle count matrices for a turbine component using stress-time histories of the imposed stress states. This paper describes the design decisions that were made and explains the implementation of these algorithms using Fortran 77. 7 refs., 7 figs

Conceptual and empirical bridges between micro- and macroevolution.

Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a unifying framework spanning multiple evolutionary scales. Here we argue that although substantial effort has been made to reconcile microevolution and macroevolution, much work remains to identify the links between biological processes at play. We highlight four major questions of evolutionary biology whose solutions require conceptual bridges between micro and macroevolution. We review potential avenues for future research to establish how mechanisms at one scale (drift, mutation, migration, selection) translate to processes at the other scale (speciation, extinction, biogeographic dispersal) and vice versa. We propose ways in which current comparative methods to infer molecular evolution, phenotypic evolution and species diversification could be improved to specifically address these questions. We conclude that researchers are in a better position than ever before to build a synthesis to understand how microevolutionary dynamics unfold over millions of years

Progress and Promise in using Arabidopsis to Study Adaptation, Divergence, and Speciation

Fundamental questions remain to be answered on how lineages split and new species form. The Arabidopsis genus, with several increasingly well characterized species closely related to the model system A. thaliana, provides a rare opportunity to address key questions in speciation research. Arabidopsis species, and in some cases populations within a species, vary considerably in their habitat preferences, adaptations to local environments, mating system, life history strategy, genome structure and chromosome number. These differences provide numerous open doors for understanding the role these factors play in population divergence and how they may cause barriers to arise among nascent species. Molecular tools available in A. thaliana are widely applicable to its relatives, and together with modern comparative genomic approaches they will provide new and increasingly mechanistic insights into the processes underpinning lineage divergence and speciation. We will discuss recent progress in understanding the molecular basis of local adaptation, reproductive isolation and genetic incompatibility, focusing on work utilizing the Arabidopsis genus, and will highlight several areas in which additional research will provide meaningful insights into adaptation and speciation processes in this genus