Detection Limit for Optically Sensing Specific Protein Interactions in Free-solution

Optical molecular sensing techniques are often limited by the refractive index change associated with the probed interactions. In this work, we present a closed form analytical model to estimate the magnitude of optical refractive index change arising from protein-protein interactions. The model, based on the Maxwell Garnett effective medium theory and first order chemical kinetics serves as a general framework for estimating the detection limits of optical sensing of molecular interactions. The model is applicable to situations where one interacting species is immobilized to a surface, as commonly done, or to emerging techniques such as Back-Scattering Interferometry (BSI) where both interacting species are un-tethered. Our findings from this model point to the strong role of as yet unidentified factors in the origin of the BSI signal resulting in significant deviation from linear optical response.Comment: 7 Page Manuscript + 14 Page Supplementary Informatio

Exploiting transient phenomena for imaging with breath figures

Breath figures refer to the patterns formed when vapor condenses into the liquid phase on a surface, revealing heterogeneities in topography or chemical composition. These figures are composed of micro-droplets, which scatter light and produce optical contrast. Differences in hydrophobicity imposed by surface features or contaminants result in a difference in micro-droplet densities, which has been used in applications such as substrate independent optical visualization of single layer graphene flakes. Here, we show that transient phenomena, such as the pinning transition of micro-droplets condensed over a polymer surface, can be used to enhance the optical contrast even when the time averaged difference in micro-droplet densities is not substantial. Thus, this work opens a new way of visualizing surface heterogeneities using transient phenomena occurring during condensation or evaporation of micro-droplets as opposed to only using time averaged differences in wettability due to the surface features. Published by AIP Publishing

Diffractive Interference Optical Analyzer (DiOPTER)

This report demonstrates a method for high-resolution refractometric measurements using, what we have termed as, a Diffractive Interference Optical Analyzer (DiOpter). The setup consists of a laser, polarizer, a transparent diffraction grating and Si-photodetectors. The sensor is based on the differential response of diffracted orders to bulk refractive index changes. In these setups, the differential read-out of the diffracted orders suppresses signal drifts and enables time-resolved determination of refractive index changes in the sample cell. A remarkable feature of this device is that under appropriate conditions, the measurement sensitivity of the sensor can be enhanced by more than two orders of magnitude due to interference between multiply reflected diffracted orders. A noise-equivalent limit of detection (LoD) of 6x10(-7) RIU was achieved in glass. This work focuses on devices with integrated sample well, made on low-cost PDMS. As the detection methodology is experimentally straightforward, it can be used across a wide array of applications, ranging from detecting changes in surface adsorbates via binding reactions to estimating refractive index (and hence concentration) variations in bulk samples. An exciting prospect of this technique is the potential integration of this device to smartphones using a simple interface based on transmission mode configuration. In a transmission configuration, we were able to achieve an LoD of 4x10(-4) RIU which is sufficient to explore several applications in food quality testing and related fields. We are envisioning the future of this platform as a personal handheld optical analyzer for applications ranging from environmental sensing to healthcare and quality testing of food products

Phenotypic Plasticity in Morphological Traits of Abelmoschus esculentus L. Induced by Histone Deacetylase Inhibitor, Trichostatin A

Epigenetic changes such as DNA methylation and histone modifications, when meiotically inherited across generations, can act as a stable evolutionary force that is independent of any accompanying DNA mutations. Certain histone deacetylase (HDAC)-inhibiting chemicals such as Trichostatin A (TSA) and sodium butyrate are known to regulate the total acetylated histones in the genome, which is important for regulating the expression of various traits in all organisms. This study investigated all morphological variations in traits of Abelmoschus esculentus L. (okra) induced by different doses of Trichostatin A in a popular okra variety, Arka Abhay. Two sets of seeds were treated with two doses (0.4 µM and 1.2 µM) of TSA and were incubated in the chemical for three and five days, respectively, to record the effects of dose and incubation periods on various agronomic characters of okra. The treatment of TSA had a negative impact on the majority of the characters under evaluation. Total seedlings emerged, and mean shoot and root length were retarded following the TSA treatment. Extremely dwarfed plants with malformed leaves and flowers were a common observation. Pollen sterility combined with distortion of the reproductive whorls of the flowers were particularly pronounced at high doses with a prolonged incubation period. Treated plants had a significantly delayed first flowering and produced short fruits with altered morphology. Variations in seeds with respect to the number, colour and size were also recorded. Total reduction with respect to seedling parameters, total pollen production, the number of fertile pollens, plant height and other damaging effects on leaves, flowers, fruits and seeds increased as the dose and incubation period increased. Statistical analysis revealed the significant negative effect of TSA treatments on plant height, the number of ridges and locules per fruit, number of seeds per fruit and test weight. The treatment, 1.2 µM Trichostatin A incubated for three days, showed a remarkable difference as traits such as total field emergence, seedling parameters and days to first flowering plant height, number of seeds per fruit and test weight deviated from the expected trend of decreasing growth parameters as the dose and incubation period increased. The study further revealed that the treatment (1.2 µM TSA incubated for three days) can be suggested for use in okra to induce epigenetic variations without significantly compromising the growth and vigour parameters of okra