CO J = 2 - 1 Emission from Evolved Stars in the Galactic Bulge

We observe a sample of 8 evolved stars in the Galactic Bulge in the CO J = 2 - 1 line using the Submillimeter Array (SMA) with angular resolution of 1 - 4 arcseconds. These stars have been detected previously at infrared wavelengths, and several of them have OH maser emission. We detect CO J = 2 - 1 emission from three of the sources in the sample: OH 359.943 +0.260, [SLO2003] A12, and [SLO2003] A51. We do not detect the remaining 5 stars in the sample because of heavy contamination from the galactic foreground CO emission. Combining CO data with observations at infrared wavelengths constraining dust mass loss from these stars, we determine the gas-to-dust ratios of the Galactic Bulge stars for which CO emission is detected. For OH 359.943 +0.260, we determine a gas mass-loss rate of 7.9 (+/- 2.2) x 10^-5 M_Sun/year and a gas-to-dust ratio of 310 (+/- 89). For [SLO2003] A12, we find a gas mass-loss rate of 5.4 (+/- 2.8) x 10^-5 M_Sun/year and a gas-to-dust ratio of 220 (+/- 110). For [SLO2003] A51, we find a gas mass-loss rate of 3.4 (+/- 3.0) x 10^-5 M_Sun/year and a gas-to-dust ratio of 160 (+/- 140), reflecting the low quality of our tentative detection of the CO J = 2 - 1 emission from A51. We find the CO J = 2 - 1 detections of OH/IR stars in the Galactic Bulge require lower average CO J = 2 - 1 backgrounds.Comment: 40 pages, 16 figures, appeared in the 1 March 2013 issue of the Astrophysical Journa

Regions of XY homology in the pig X chromosome and the boundary of the pseudoautosomal region.

BACKGROUND: Sex chromosomes are subject to evolutionary pressures distinct from the remainder of the genome, shaping their structure and sequence content. We are interested in the sex chromosomes of domestic pigs (Sus scrofa), how their structure and gene content compares and contrasts with other mammalian species, and the role of sex-linked genes in fertility. This requires an understanding of the XY-homologous sequence on these chromosomes.To this end, we performed microarray-based comparative genomic hybridisation (array-CGH) with male and female Duroc genomic DNA on a pig X-chromosome BAC tiling-path microarray. Putative XY-homologous BACs from regions of interest were subsequently FISH mapped. RESULTS: We show that the porcine PAR is approximately 6.5-6.9 Mb at the beginning of the short arm of the X, with gene content reflective of the artiodactyl common ancestor. Our array-CGH data also shows an XY-homologous region close to the end of the X long arm, spanning three X BACs. These BACs were FISH mapped, and paint the entire long arm of SSCY. Further clones of interest revealed X-autosomal homology or regions containing repetitive content. CONCLUSIONS: This study has identified regions of XY homology in the pig genome, and defined the boundary of the PAR on the X chromosome. This adds to our understanding of the evolution of the sex chromosomes in different mammalian lineages, and will prove valuable for future comparative genomic work in suids and for the construction and annotation of the genome sequence for the sex chromosomes. Our finding that the SSCYq repetitive content has corresponding sequence on the X chromosome gives further insight into structure of SSCY, and suggests further functionally important sequences remain to be discovered on the X and Y.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

A Combined Spitzer and Herschel Infrared Study of Gas and Dust in the Circumbinary Disk Orbiting V4046 Sgr

We present results from a spectroscopic Spitzer and Herschel mid-to-far-infrared study of the circumbinary disk orbiting the evolved (age ~12-23 Myr) close binary T Tauri system V4046 Sgr. Spitzer IRS spectra show emission lines of [Ne II], H_2 S(1), CO_2 and HCN, while Herschel PACS and SPIRE spectra reveal emission from [O I], OH, and tentative detections of H_2O and high-J transitions of CO. We measure [Ne III]/[Ne II] < 0.13, which is comparable to other X-ray/EUV luminous T Tauri stars that lack jets. We use the H_2 S(1) line luminosity to estimate the gas mass in the relatively warm surface layers of the inner disk. The presence of [O I] emission suggests that CO, H_2O, and/or OH is being photodissociated, and the lack of [C I] emission suggests any excess C may be locked up in HCN, CN and other organic molecules. Modeling of silicate dust grain emission features in the mid-infrared indicates that the inner disk is composed mainly of large (r~5 um) amorphous pyroxene and olivine grains (~86% by mass) with a relatively large proportion of crystalline silicates. These results are consistent with other lines of evidence indicating that planet building is ongoing in regions of the disk within ~30 AU of the central, close binary.Comment: 33 pages, 9 figures, 3 tables. Accepted for publication in Ap

Production practices of Local pig farmers in Ghana

Local pig production is of economic, nutritional and socio-cultural importance to livelihoods in Ghana. Data was collected from 176 local pig farmers in four regions of Ghana using pretested structured questionnaire. Majority of the farmers interviewed were males over 30 years and kept crossbred pigs (64%) with income (95%) as their main motivation. In terms of housing for the pigs, most farmers use sheds (39%), about a third had permanent structures (34%), whilst the rest (22%) use stalls with a few keeping their animals in their yards (2%) or having no housing facility (2%) at all. Growth rate of pigs was the most important trait (49%) for the farmers compared to aesthetic traits like coat colour or ear orientation. Majority of the farmers (90%) acquired their breeding stock from family, friends and the open market with only 10% acquiring breeding stock from government breeding stations. Local pig production in the study area was characterised as semi-intensive with huge opportunities for stakeholders to make interventions in provision of improved breeds, housing, feeding and veterinary care to boost local pig production

Biases in, and corrections to, KSB shear measurements

We analyse the KSB method to estimate gravitational shear from surface-brightness moments of small and noisy galaxy images. We identify three potentially problematic assumptions. These are: (1) While gravitational shear must be estimated from averaged galaxy images, KSB derives a shear estimate from each individual image and then takes the average. Since the two operations do not commute, KSB gives biased results. (2) KSB implicitly assumes that galaxy ellipticities are small, while weak gravitational lensing assures only that the change in ellipticity due to the shear is small. (3) KSB does not invert the convolution with the point-spread function, but gives an approximate PSF correction which - even for a circular PSF - holds only in the limit of circular sources. The effects of assumptions (2) and (3) partially counter-act in a way dependent on the width of the weight function and of the PSF. We quantitatively demonstrate the biases due to all assumptions, extend the KSB approach consistently to third order in the shear and ellipticity and show that this extension lowers the biases substantially. The issue of proper PSF deconvolution will be addressed in a forthcoming paper.Comment: 12 pages, 10 figures, MNRAS submitte

Transitional disks and their origins: an infrared spectroscopic survey of Orion A

Transitional disks are protoplanetary disks around young stars, with inner holes or gaps which are surrounded by optically thick outer, and often inner, disks. Here we present observations of 62 new transitional disks in the Orion A star-forming region. These were identified using the \textit{Spitzer Space Telescope}'s Infrared Spectrograph and followed up with determinations of stellar and accretion parameters using the Infrared Telescope Facility's SpeX. We combine these new observations with our previous results on transitional disks in Taurus, Chamaeleon I, Ophiuchus and Perseus, and with archival X-ray observations. This produces a sample of 105 transitional disks of "cluster" age 3 Myr or less, by far the largest hitherto assembled. We use this sample to search for trends between the radial structure in the disks and many other system properties, in order to place constraints on the possible origins of transitional disks. We see a clear progression of host star accretion rate and the different disk morphologies. We confirm that transitional disks with complete central clearings have median accretion rates an order of magnitude smaller than radially continuous disks of the same population. Pre-transitional disks --- those objects with gaps that separate inner and outer disks --- have median accretion rates intermediate between the two. Our results from the search for statistically significant trends, especially related to $\dot{M}$, strongly support that in both cases the gaps are far more likely to be due to the gravitational influence of Jovian planets or brown dwarfs orbiting within the gaps, than to any of the photoevaporative, turbulent or grain-growth processes that can lead to disk dissipation. We also find that the fraction of Class II YSOs which are transitional disks is large, 0.1-0.2, especially in the youngest associations.Comment: 96 pages, 25 figures, resubmitted to Ap

Origin and phylogenetic status of the local Ashanti Dwarf pig (ADP) of Ghana based on genetic analysis.

BACKGROUND: The Ashanti Dwarf Pig (ADP) of Ghana is an endangered pig breed with hardy and disease resistant traits. Characterisation of animal genetic resources provides relevant data for their conservation and sustainable use for food security and economic development. We investigated the origin and phylogenetic status of the local ADP of Ghana and their crosses with modern commercial breeds based on mtDNA, MC1R, Y-chromosome sequence polymorphisms, and genome-wide SNP genotyping. RESULTS: The study involved 164 local pigs sampled from the three agro-ecological zones of Ghana. Analyses of the mitochondrial D-loop region and Y-chromosome sequences revealed both European and Asian genetic signatures, with differences between the geographical zones. Black coat colour is the most predominant within the breed, with black MC1R alleles of both Asian and European origin. European alleles for spotting are present at a low frequency in the sample set, and may account for the occurrence of spotted piglets in some APD litters. PCA analysis of SNP data revealed a strong location and breed effect on clustering of local Ghanaian pigs. On a global level, Ghanaian local pigs cluster closely with European pigs of commercial origin, but we identified intervals via FST analyses that may elucidate loci for ADP specific traits. CONCLUSIONS: The presence of both European and Asian contributions, with differences between geographical zones probably reflects trading and colonial influences. Understanding the effects of admixture on important adaptive and economic traits of the ADP and other local breeds in Africa is critical for developing sustainable conservation programmes to prevent the decline of these genetic resources.The authors are grateful to Cambridge in Africa Research Excellence (CAPREx) for the award of Post-doctoral Fellowship to ROA, and the Alborada Trust for supporting the Research. G.L is supported by the European Research Council (337574-UNDEAD), and BMS is supported by BBSRC grant number BB/N000129/1. CAS is funded by the Department of Pathology and Hughes Hall, Cambridge