Vertical Changes of Recent Ostracode Assemblages and Environment in the Inner Part of Jakarta Bay, Indonesia

A short sediment core from the inner part of Jakarta Bay, Indonesia, was quantitatively analysed for ostracods (minute Crustacea), total organic carbon (TOC) and total nitrogen (TN) contents, and the vertical distributions were recorded. A total of 53 ostracod species were obtained from 80 continuous core samples. The dominant species were Keijella carriei and Loxoconcha wrighti, which are common in areas with high TOC and TN contents. Based on an analysis of ostracod assemblages and carbon/nitrogen ratio, the study site began to be influenced by organic contamination from around 1950. Although the population of Jakarta City has increased rapidly since then, TOC and TN contents which were low, have gradually increased (0.7%–0.9% and 0.10%–0.12%, respectively), probably due to addition of nutrients from river sedimentation. The increased sedimentation rate after 1950 resulted in an increasing TOC ratio. The observed correlation between TOC and dominant species shows that Phlyctenophora orientalis may be a good indicator for monitoring increases in the narrow TOC content range of 0.7%–1.1%

Seasonal changes in nauplii and adults of Calanus hyperboreus (Copepoda) captured in sediment traps, Amundsen Gulf, Canadian Arctic

AbstractArctic copepods were collected using time-series sediment traps in the Amundsen Gulf, Canadian Arctic, as part of the CASES (Canadian Arctic Shelf Exchange Study) program. Four sediment traps were deployed at three stations (200m depth for CA15, 200 and 400m depths for CA18, and 200m depth for CA20) from October 2003 to July 2004. We collected many copepod nauplii ranging in body length from 155 to 811μm, among which nauplii (mostly N1–2) of Calanus with a size of ∼190μm apparently increased in abundance from February to mid-March. Mature-stage adult females (AF) of Calanus hyperboreus were collected in the traps from February to March, and adult males of C. hyperboreus appeared from November to December at all stations. The likely spawning period of these AF coincided with the occurrence period of ∼190μm-sized nauplii. This finding suggests that these nauplii were derived from C. hyperboreus and that their breeding began at the beginning of November or December at the latest, continuing through April in the Amundsen Gulf

Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain

AbstractBackground: The purine repressor (PurR) regulates genes that encode enzymes for purine biosynthesis. PurR has a two domain structure with an N-terminal DNA-binding domain (DBD) and a C-terminal corepressor-binding domain (CBD). The three-dimensional structure of a ternary complex of PurR bound to both corepressor and a specific DNA sequence has recently been determined by X-ray crystallography.Results We have determined the solution structure of the PurR DBD by NMR. It contains three helices, with the first and second helices forming a helix-turn-helix motif. The tertiary structure of the three helices is very similar to that of the corresponding region in the ternary complex. The structure of the hinge helical region, however, which makes specific base contacts in the minor groove of DNA, is disordered in the DNA-free form.Conclusion The stable formation of PurR hinge helices requires PurR dimerization, which brings the hinge regions proximal to each other. The dimerization of the hinge helices is likely to be controled by the CBD dimerization interface, but is induced by specific-DNA binding

Ecosystem function and particle flux dynamics across the Mackenzie Shelf (Beaufort Sea, Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings

A. Forest et al. -- 78 pages, 18 figures, 6 tablesA better understanding of how environmental changes affect organic matter fluxes in Arctic marine ecosystems is sorely needed. Here, we combine mooring times-series, ship-based measurements and remote-sensing to assess the variability and forcing factors of vertical fluxes of particulate organic carbon (POC) across the Mackenzie Shelf in 2009. We developed a geospatial model of these fluxes to proceed to an integrative analysis of their biophysical determinants in summer. Flux data were obtained with sediment traps and via a regional empirical algorithm applied to particle size-distributions (17 classes from 0.08–4.2 mm) measured by an Underwater Vision Profiler 5. Redundancy analyses and forward selection of abiotic/biotic parameters, linear trends, and spatial structures (i.e. principal coordinates of neighbor matrices, PCNM), were conducted to partition the variation of POC flux size-classes. Flux variability was explained at 69.5 % by the addition of a linear temporal trend, 7 significant PCNM and 9 biophysical variables. The interaction of all these factors explained 27.8 % of the variability. The first PCNM canonical axis (44.4 % of spatial variance) reflected a shelf-basin gradient controlled by bottom depth and ice concentration (p < 0.01), but a complex assemblage of fine-to-broad scale patterns was also identified. Among biophysical parameters, bacterial production and northeasterly wind (upwelling-favorable) were the two strongest explanatory variables (r2 cum. = 0.37), suggesting that bacteria were associated with sinking material, which was itself partly linked to upwelling-induced productivity. The second most important spatial structure corresponded actually to the two areas where shelf break upwelling is known to occur under easterlies. Copepod biomass was negatively correlated (p < 0.05) with vertical POC fluxes, implying that metazoans played a significant role in the regulation of export fluxes. The low fractal dimension of settling particles (1.26) and the high contribution (~94 %) of fast-sinking small aggregates (<1 mm; 20–30 m d−1) to the mass fluxes suggested that settling material across the region was overall fluffy, porous, and likely resulting from the aggregation of marine detritus, gel-like substances and ballast minerals. Our study demonstrates that vertical POC fluxes in Arctic shelf systems are spatially complex, sensitive to environmental forcings, and determined by both physicochemical mechanisms and food web functioning. In conclusion, we hypothesize that the incorporation of terrestrial matter into the Beaufort Sea food web could be catalyzed by bacteria via the incorporation of dissolved terrestrial carbon liberated through the photo-cleavage and/or hydrolysis of land-derived POC interweaved with marine aggregatesThis work would not have been possible without the professional and enthusiastic assistance of the officers and crew members of the CCGS Amundsen. We express gratitude to L. Prieur and C. Marec for their help in the deployment of the CTD-rosette and for the onboard processing of UVP5 data. We thank J. Martin, J. Gagnon, A. Mignot and M. Gosselin for sharing the chlorophyll data in order to post-calibrate the fluorometer. 5 We thank P. Guillot for the validation of physical data. We thank M. Fortier, K. L´evesque and J. Ehn for the organization of the fieldwork, workshops and for support at sea. This study was conducted as part of the Malina Scientific Program funded by ANR (Agence nationale de la recherche), INSU-CNRS (Institut national des sciences de l’univers – Centre national de la recherche scientifique), CNES (Centre national d’e´tudes spatiales) and ESA (European Space Agency). Additional support from ArcticNet (a Network of Centres of Excellence of Canada) and from the ArcticNet-Imperial Oil Research Collaboration was welcomed and appreciated. The IAEA is grateful to the Government of the Principality of Monaco for the support provided to its Environment Laboratories. This work is a joint contribution to the Malina Project and to the research 15 programs of Que´bec-Oce´an, ArcticNet, the Takuvik Joint U. Laval/CNRS Laboratory, the Arctic in Rapid Transition (ART) Initiative, to the Canada Research Chair on the Response of Marine Arctic Ecosystems to ClimateWarming, and to the Canada Excellence Research Chair (CERC) in Remote Sensing of Canada’s New Arctic FrontierPeer reviewe

Anthropometry and body composition in ethnic Japanese and Caucasian adolescent girls: Considerations on ethnicity and menarche

Objective: This study aimed to compare the various anthropometric and body composition parameters based on the ethnicity and the absence or presence of menarche.Design: A cross-sectional study with incomplete sampling, using the subject as the evaluation unit.Subjects: the final sample of 550 subjects was composed of 122 Japanese and 179 Caucasian premenarcheal adolescents, and 72 Japanese and 177 Caucasian postmenarcheal adolescents.Methods: the variables of body composition were measured through the following methods: bioelectrical impedance analysis, near-infrared interactance (NIR), Slaughter cutaneous skinfold equations and body mass index. Weight, height and sitting height were also evaluated.Results: the Japanese pre- and postmenarcheal girls presented lower weight and height values when compared with the Caucasian girls. in general, the Japanese premenarcheal girls presented less fat and fat-free mass than the premenarcheal Caucasian girls. This fact was demonstrated through NIR results. Conversely, the Japanese postmenarcheal adolescents accumulated more fat than their Caucasian counterparts. However, significant differences were solely encountered in the values of cutaneous skinfold percent body fat. With regard to menarche, it was verified that, regardless of ethnicity, all the anthropometric and body composition variables reached higher values among postmenarcheal adolescents when compared with premenarcheal adolescents.Conclusion: Different results of weight and height between the ethnic groups may bring back the discussion concerning separate growth curves for different ethnic groups. the results of the body composition analysis indicated high adiposity levels among postmenarcheal adolescents.Universidade Federal de São Paulo, Escola Paulista Med, Dept Postgrad Nutr, BR-04020060 São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Prevent Med, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Postgrad Nutr, BR-04020060 São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Prevent Med, São Paulo, BrazilWeb of Scienc

A Large Hadron Electron Collider at CERN

This document provides a brief overview of the recently published report on the design of the Large Hadron Electron Collider (LHeC), which comprises its physics programme, accelerator physics, technology and main detector concepts. The LHeC exploits and develops challenging, though principally existing, accelerator and detector technologies. This summary is complemented by brief illustrations of some of the highlights of the physics programme, which relies on a vastly extended kinematic range, luminosity and unprecedented precision in deep inelastic scattering. Illustrations are provided regarding high precision QCD, new physics (Higgs, SUSY) and electron-ion physics. The LHeC is designed to run synchronously with the LHC in the twenties and to achieve an integrated luminosity of O(100) fb$^{-1}$. It will become the cleanest high resolution microscope of mankind and will substantially extend as well as complement the investigation of the physics of the TeV energy scale, which has been enabled by the LHC

A systematic autopsy survey of human infant bridging veins

In the first years of life, subdural haemorrhage (SDH) within the cranial cavity can occur through accidental and non-accidental mechanisms as well as from birth-related injury. This type of bleeding is the most common finding in victims of abusive head trauma (AHT). Historically, the most frequent cause of SDHs in infancy is suggested to be traumatic damage to bridging veins traversing from the brain to the dural membrane. However, several alternative hypotheses have been suggested for the cause and origin of subdural bleeding. It has also been suggested by some that bridging veins are too large to rupture through the forces associated with AHT. To date, there have been no systematic anatomical studies on infant bridging veins. During 43 neonatal, infant and young child post-mortem examinations, we have mapped the locations and numbers of bridging veins onto a 3D model of the surface of a representative infant brain. We have also recorded the in situ diameter of 79 bridging veins from two neonatal, one infant and two young children at post-mortem examination. Large numbers of veins, both distant from and directly entering the dural venous sinuses, were discovered travelling between the brain and dural membrane, with the mean number of veins per brain being 54.1 and the largest number recorded as 94. The mean diameter of the bridging veins was 0.93 mm, with measurements ranging from 0.05 to 3.07 mm. These data demonstrate that some veins are extremely small and subjectively, and they appear to be delicate. Characterisation of infant bridging veins will contribute to the current understanding of potential vascular sources of subdural bleeding and could also be used to further develop computational models of infant head injury