Population Genetic Structure in a Social Landscape: Barley in a Traditional Ethiopian Agricultural System

Conservation strategies are increasingly driven by our understanding of the processes and patterns of gene flow across complex landscapes. The expansion of population genetic approaches into traditional agricultural systems requires understanding how social factors contribute to that landscape, and thus to gene flow. This study incorporates extensive farmer interviews and population genetic analysis of barley landraces (Hordeum vulgare) to build a holistic picture of farmer-mediated geneflow in an ancient, traditional agricultural system in the highlands of Ethiopia. We analyze barley samples at 14 microsatellite loci across sites at varying elevations and locations across a contiguous mountain range, and across farmer-identified barley types and management strategies. Genetic structure is analyzed using population-based and individual-based methods, including measures of population differentiation and genetic distance, multivariate Principal Coordinate Analysis, and Bayesian assignment tests. Phenotypic analysis links genetic patterns to traits identified by farmers. We find that differential farmer management strategies lead to markedly different patterns of population structure across elevation classes and barley types. The extent to which farmer seed management appears as a stronger determinant of spatial structure than the physical landscape highlights the need for incorporation of social, landscape, and genetic data for the design of conservation strategies in human-influenced landscapes

Reimagining the potential of Earth observations for ecosystem service assessments

The benefits nature provides to people, called ecosystem services, are increasingly recognized and accounted for in assessments of infrastructure development, agricultural management, conservation prioritization, and sustainable sourcing. These assessments are often limited by data, however, a gap with tremendous potential to be filled through Earth observations (EO), which produce a variety of data across spatial and temporal extents and resolutions. Despite widespread recognition of this potential, in practice few ecosystem service studies use EO. Here, we identify challenges and opportunities to using EO in ecosystem service modeling and assessment. Some challenges are technical, related to data awareness, processing, and access. These challenges require systematic investment in model platforms and data management. Other challenges are more conceptual but still systemic; they are byproducts of the structure of existing ecosystem service models and addressing them requires scientific investment in solutions and tools applicable to a wide range of models and approaches. We also highlight new ways in which EO can be leveraged for ecosystem service assessments, identifying promising new areas of research. More widespread use of EO for ecosystem service assessment will only be achieved if all of these types of challenges are addressed. This will require non-traditional funding and partnering opportunities from private and public agencies to promote data exploration, sharing, and archiving. Investing in this integration will be reflected in better and more accurate ecosystem service assessments worldwide

Genotypes for farmers' varieties of barley in the Gamo Highlands of Ethiopia at 13 microsatellite loci

Barley samples were collected in the field in Ethiopia, through leaf samples in situ, or seeds planted in the greenhouse at the University of Montana. Genotyping was performed on an ABI Genetic Analyzer, and genotypes were determined using ABI Genemapper software

Subnational distribution of average farm size and smallholder contributions to global food production

Smallholder farming is the most prevalent form of agriculture in the world, supports many of the planet’s most vulnerable populations, and coexists with some of its most diverse and threatened landscapes. However, there is little information about the location of small farms, making it difficult both to estimate their numbers and to implement effective agricultural, development, and land use policies. Here, we present a map of mean agricultural area, classified by the amount of land per farming household, at subnational resolutions across three key global regions using a novel integration of household microdata and agricultural landscape data. This approach provides a subnational estimate of the number, average size, and contribution of farms across much of the developing world. By our estimates, 918 subnational units in 83 countries in Latin America, sub-Saharan Africa, and South and East Asia average less than five hectares of agricultural land per farming household. These smallholder-dominated systems are home to more than 380 million farming households, make up roughly 30% of the agricultural land and produce more than 70% of the food calories produced in these regions, and are responsible for more than half of the food calories produced globally, as well as more than half of global production of several major food crops. Smallholder systems in these three regions direct a greater percentage of calories produced toward direct human consumption, with 70% of calories produced in these units consumed as food, compared to 55% globally. Our approach provides the ability to disaggregate farming populations from non-farming populations, providing a more accurate picture of farming households on the landscape than has previously been available. These data meet a critical need, as improved understanding of the prevalence and distribution of smallholder farming is essential for effective policy development for food security, poverty reduction, and conservation agendas

Automated Plantation Mapping in Southeast Asia Using MODIS Data and Imperfect Visual Annotations

Expansion of large-scale tree plantations for commodity crop and timber production is a leading cause of tropical deforestation. While automated detection of plantations across large spatial scales and with high temporal resolution is critical to inform policies to reduce deforestation, such mapping is technically challenging. Thus, most available plantation maps rely on visual inspection of imagery, and many of them are limited to small areas for specific years. Here, we present an automated approach, which we call Plantation Analysis by Learning from Multiple Classes (PALM), for mapping plantations on an annual basis using satellite remote sensing data. Due to the heterogeneity of land cover classes, PALM utilizes ensemble learning to simultaneously incorporate training samples from multiple land cover classes over different years. After the ensemble learning, we further improve the performance by post-processing using a Hidden Markov Model. We implement the proposed automated approach using MODIS data in Sumatra and Indonesian Borneo (Kalimantan). To validate the classification, we compare plantations detected using our approach with existing datasets developed through visual interpretation. Based on random sampling and comparison with high-resolution images, the user’s accuracy and producer’s accuracy of our generated map are around 85% and 80% in our study region

Farming and the geography of nutrient production for human use: a transdisciplinary analysis

Background: Information about the global structure of agriculture and nutrient production and its diversity is essential to improve present understanding of national food production patterns, agricultural livelihoods, and food chains, and their linkages to land use and their associated ecosystems services. Here we provide a plausible breakdown of global agricultural and nutrient production by farm size, and also study the associations between farm size, agricultural diversity, and nutrient production. This analysis is crucial to design interventions that might be appropriately targeted to promote healthy diets and ecosystems in the face of population growth, urbanisation, and climate change. Methods: We used existing spatially-explicit global datasets to estimate the production levels of 41 major crops, seven livestock, and 14 aquaculture and fish products. From overall production estimates, we estimated the production of vitamin A, vitamin B12, folate, iron, zinc, calcium, calories, and protein. We also estimated the relative contribution of farms of different sizes to the production of different agricultural commodities and associated nutrients, as well as how the diversity of food production based on the number of different products grown per geographic pixel and distribution of products within this pixel (Shannon diversity index [H]) changes with different farm sizes. Findings: Globally, small and medium farms (≤50 ha) produce 51–77% of nearly all commodities and nutrients examined here. However, important regional differences exist. Large farms (>50 ha) dominate production in North America, South America, and Australia and New Zealand. In these regions, large farms contribute between 75% and 100% of all cereal, livestock, and fruit production, and the pattern is similar for other commodity groups. By contrast, small farms (≤20 ha) produce more than 75% of most food commodities in sub-Saharan Africa, southeast Asia, south Asia, and China. In Europe, west Asia and north Africa, and central America, medium-size farms (20–50 ha) also contribute substantially to the production of most food commodities. Very small farms (≤2 ha) are important and have local significance in sub-Saharan Africa, southeast Asia, and south Asia, where they contribute to about 30% of most food commodities. The majority of vegetables (81%), roots and tubers (72%), pulses (67%), fruits (66%), fish and livestock products (60%), and cereals (56%) are produced in diverse landscapes (H>1·5). Similarly, the majority of global micronutrients (53–81%) and protein (57%) are also produced in more diverse agricultural landscapes (H>1·5). By contrast, the majority of sugar (73%) and oil crops (57%) are produced in less diverse ones (H≤1·5), which also account for the majority of global calorie production (56%). The diversity of agricultural and nutrient production diminishes as farm size increases. However, areas of the world with higher agricultural diversity produce more nutrients, irrespective of farm size. Interpretation: Our results show that farm size and diversity of agricultural production vary substantially across regions and are key structural determinants of food and nutrient production that need to be considered in plans to meet social, economic, and environmental targets. At the global level, both small and large farms have key roles in food and nutrition security. Efforts to maintain production diversity as farm sizes increase seem to be necessary to maintain the production of diverse nutrients and viable, multifunctional, sustainable landscapes. Funding: Commonwealth Scientific and Industrial Research Organisation, Bill & Melinda Gates Foundation, CGIAR Research Programs on Climate Change, Agriculture and Food Security and on Agriculture for Nutrition and Health funded by the CGIAR Fund Council, Daniel and Nina Carasso Foundation, European Union, International Fund for Agricultural Development, Australian Research Council, National Science Foundation, Gordon and Betty Moore Foundation, and Joint Programming Initiative on Agriculture, Food Security and Climate Change—Belmont Forum