Speech-plans: Generating evaluative responses in spoken dialogue

Recent work on evaluation of spoken dialogue systems indicates that better algorithms are needed for the presentation of complex information in speech. Current dialogue systems often rely on presenting sets of options and their attributes sequentially. This places a large memory burden on users, who have to remember complex trade-offs between multiple options and their attributes. To address these problems we build on previous work using multiattribute decision theory to devise speech-planning algorithms that present usertailored summaries, comparisons and recommendations that allow users to focus on critical differences between options and their attributes. We discuss the differences between speech and text planning that result from the particular demands of the speech situation.

Lambda-prophage induction modeled as a cooperative failure mode of lytic repression

We analyze a system-level model for lytic repression of lambda-phage in E. coli using reliability theory, showing that the repressor circuit comprises 4 redundant components whose failure mode is prophage induction. Our model reflects the specific biochemical mechanisms involved in regulation, including long-range cooperative binding, and its detailed predictions for prophage induction in E. coli under ultra-violet radiation are in good agreement with experimental data.Comment: added referenc

Genes in the postgenomic era

We outline three very different concepts of the gene - 'instrumental', 'nominal', and 'postgenomic'. The instrumental gene has a critical role in the construction and interpretation of experiments in which the relationship between genotype and phenotype is explored via hybridization between organisms or directly between nucleic acid molecules. It also plays an important theoretical role in the foundations of disciplines such as quantitative genetics and population genetics. The nominal gene is a critical practical tool, allowing stable communication between bioscientists in a wide range of fields grounded in well-defined sequences of nucleotides, but this concept does not embody major theoretical insights into genome structure or function. The post-genomic gene embodies the continuing project of understanding how genome structure supports genome function, but with a deflationary picture of the gene as a structural unit. This final concept of the gene poses a significant challenge to conventional assumptions about the relationship between genome structure and function, and between genotype and phenotype

Visual change detection on tunnel linings

We describe an automated system for detecting, localising, clustering and ranking visual changes on tunnel surfaces. The system is designed to provide assistance to expert human inspectors carrying out structural health monitoring and maintenance on ageing tunnel networks. A three-dimensional tunnel surface model is first recovered from a set of reference images using Structure from Motion techniques. New images are localised accurately within the model and changes are detected versus the reference images and model geometry. We formulate the problem of detecting changes probabilistically and evaluate the use of different feature maps and a novel geometric prior to achieve invariance to noise and nuisance sources such as parallax and lighting changes. A clustering and ranking method is proposed which efficiently presents detected changes and further improves the inspection efficiency. System performance is assessed on a real data set collected using a low-cost prototype capture device and labelled with ground truth. Results demonstrate that our system is a step towards higher frequency visual inspection at a reduced cost.The authors gratefully acknowledge the support by Toshiba Research Europe.This is the accepted manuscript. The final publication is available at Springer via http://dx.doi.org/10.1007/s00138-014-0648-8

Russia’s Eurasian past, present and future: rival international societies and Moscow’s place in the post-cold war world

The failure of post-Soviet Russia to integrate into the West became evident with the 2014 Ukraine crisis, leading Moscow to accelerate its declared “pivot to the East”. However, the increased dependence on China carries its own risks, such as the danger of becoming Beijing’s junior partner. For an erstwhile superpower that continues to declare and prize its autonomy in international affairs, this is a particularly unappealing prospect. Thus, it remains to be seen whether a genuinely balanced partnership can exist between both countries. This article uses insights from Adam Watson’s pendulum theory to explore Russia’s post-2014 Eurasian predicament. We argue that the rapid rightward swing of the pendulum in the Euro-Atlantic order following the end of the Cold War has proven indigestible for Moscow. The article then moves to discuss the Sino-Russian relationship in the context of the emerging Eurasian space. It concludes that the growing disillusionment of Russian leaders with the West since the 2000s, along with the normative convergence between Moscow and Beijing, has led to a closer partnership between the two. Yet the partnership is also riddled with a number of insecurities on Moscow’s side that could undermine the long-term prospects for cooperation between Russia and China

Phenotypic and Functional Changes in Blood Monocytes Following Adherence to Endothelium

Blood monocytes are known to express endothelial-like genes during co-culture with endothelium. In this study, the time-dependent change in the phenotype pattern of primary blood monocytes after adhering to endothelium is reported using a novel HLA-A2 mistyped co-culture model.Freshly isolated human PBMCs were co-cultured with human umbilical vein endothelial cells or human coronary arterial endothelial cells of converse human leukocyte antigen A2 (HLA-A2) status. This allows the tracking of the PBMC-derived cells by HLA-A2 expression and assessment of their phenotype pattern over time. PBMCs that adhered to the endothelium at the start of the co-culture were predominantly CD11b+ blood monocytes. After 24 to 72 hours in co-culture, the endothelium-adherent monocytes acquired endothelial-like properties including the expression of endothelial nitric oxide synthase, CD105, CD144 and vascular endothelial growth factor receptor 2. The expression of monocyte/macrophage lineage antigens CD14, CD11b and CD36 were down regulated concomitantly. The adherent monocytes did not express CD115 after 1 day of co-culture. By day 6, the monocyte-derived cells expressed vascular cell adhesion molecule 1 in response to tumour necrosis factor alpha. Up to 10% of the PBMCs adhered to the endothelium. These monocyte-derived cells contributed up to 30% of the co-cultured cell layer and this was dose-dependent on the PBMC seeding density.Human blood monocytes undergo rapid phenotype change to resemble endothelial cells after adhering to endothelium

Reconstruction of Cell Lineage Trees in Mice

The cell lineage tree of a multicellular organism represents its history of cell divisions from the very first cell, the zygote. A new method for high-resolution reconstruction of parts of such cell lineage trees was recently developed based on phylogenetic analysis of somatic mutations accumulated during normal development of an organism. In this study we apply this method in mice to reconstruct the lineage trees of distinct cell types. We address for the first time basic questions in developmental biology of higher organisms, namely what is the correlation between the lineage relation among cells and their (1) function, (2) physical proximity and (3) anatomical proximity. We analyzed B-cells, kidney-, mesenchymal- and hematopoietic-stem cells, as well as satellite cells, which are adult skeletal muscle stem cells isolated from their niche on the muscle fibers (myofibers) from various skeletal muscles. Our results demonstrate that all analyzed cell types are intermingled in the lineage tree, indicating that none of these cell types are single exclusive clones. We also show a significant correlation between the physical proximity of satellite cells within muscles and their lineage. Furthermore, we show that satellite cells obtained from a single myofiber are significantly clustered in the lineage tree, reflecting their common developmental origin. Lineage analysis based on somatic mutations enables performing high resolution reconstruction of lineage trees in mice and humans, which can provide fundamental insights to many aspects of their development and tissue maintenance

Support for a synaptic chain model of neuronal sequence generation

In songbirds, the remarkable temporal precision of song is generated by a sparse sequence of bursts in the premotor nucleus HVC. To distinguish between two possible classes of models of neural sequence generation, we carried out intracellular recordings of HVC neurons in singing zebra finches (Taeniopygia guttata). We found that the subthreshold membrane potential is characterized by a large, rapid depolarization 5–10 ms before burst onset, consistent with a synaptically connected chain of neurons in HVC. We found no evidence for the slow membrane potential modulation predicted by models in which burst timing is controlled by subthreshold dynamics. Furthermore, bursts ride on an underlying depolarization of ~10-ms duration, probably the result of a regenerative calcium spike within HVC neurons that could facilitate the propagation of activity through a chain network with high temporal precision. Our results provide insight into the fundamental mechanisms by which neural circuits can generate complex sequential behaviours.National Institutes of Health (U.S.) (Grant MH067105)National Institutes of Health (U.S.) (Grant DC009280)National Science Foundation (U.S.) (IOS-0827731)Alfred P. Sloan Foundation (Research Fellowship

Moralizing biology: the appeal and limits of the new compassionate view of nature

In recent years, a proliferation of books about empathy, cooperation and pro-social behaviors (Brooks, 2011a) has significantly influenced the discourse of the life-sciences and reversed consolidated views of nature as a place only for competition and aggression. In this article I describe the recent contribution of three disciplines – moral psychology (Jonathan Haidt), primatology (Frans de Waal) and the neuroscience of morality – to the present transformation of biology and evolution into direct sources of moral phenomena, a process here named the ‘moralization of biology’. I conclude by addressing the ambivalent status of this constellation of authors, for whom today ‘morality comes naturally’: I explore both the attractiveness of their message, and the problematic epistemological assumptions of their research-programs in the light of new discoveries in developmental and molecular biology