9 research outputs found
Complete genome sequencing of the luminescent bacterium, Vibrio qinghaiensis sp. Q67 using PacBio technology
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
The interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
- Author
- A Franceschini
- AJ Enright
- B Schwikowski
- B Titz
- B Titz
- CC Friedel
- EH Simpson
- G Butland
- H Deveau
- H Luo
- JR Parrish
- L Meyniel-Schicklin
- M Meier
- M Remm
- M Sabri
- MD Dyer
- MG Vizoso Pinto
- P Braun
- P Hu
- R Häuser
- R Häuser
- R Häuser
- R Häuser
- RL Tatusov
- S Blasche
- S Durmus
- S Orchard
- S Sato
- S Wuchty
- S Wuchty
- S Wuchty
- S Wuchty
- S Wuchty
- S Wuchty
- SD Tekir
- SM Bailer
- SV Rajagopala
- V Navratil
- WH Pope
- Y Shimoda
- YC Chen
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Transferring knowledge of bacterial protein interaction networks to predict pathogen targeted human genes and immune signaling pathways: a case study on M. tuberculosis
- Author
- A Chatr-Aryamontri
- A Koul
- B Boeckmann
- BK Chung
- C Brocker
- D Barrell
- D Szklarczyk
- Erik K. Flemington
- F Yu
- H Yu
- H Zhou
- H Zhou
- H Zhou
- I Ben-Kahla
- I Comas
- J Miller
- JC Palomino
- K Kandasamy
- K Raman
- Kun Zhang
- L Salichos
- M Ashburner
- MD Dyer
- MJ Marakalala
- N Lin
- N Ward
- ON Silva
- P Nunn
- R Fan
- S Ananthasubramanian
- S Bandyopadhyay
- S DeBodt
- S DurmuÅŸ
- S Maetschke
- S Mei
- S Mei
- S Mukherjee
- S Schleker
- SD DurmuÅŸ Tekir
- SF Altschul
- SF Altschul
- Suyu Mei
- T Cui
- X Wu
- Y Qi
- ZP Liu
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Global multiple protein-protein interaction network alignment by combining pairwise network alignments
- Author
- A Dobin
- A Schlicker
- AE Aladag
- AP Cootes
- B Kacar
- B Kelley
- B Neyshabur
- C Clark
- C Liao
- C Papadimitriou
- C Stark
- CS Goh
- D LaCount
- E Nabieva
- EA Franzosa
- F Ay
- F Mena
- G Ciriello
- GD Bader
- HT Phan
- J Berg
- J Dutkowski
- J Flannick
- J Flannick
- Jakob Dohrmann
- JD Han
- Juris Puchin
- L Chindelevitch
- M Koyuturk
- M Mann
- M Narayanan
- M Zaslavskiy
- N Pržulj
- O Kuchaiev
- O Kuchaiev
- R Sharan
- R Singh
- Rahul Singh
- RL Finley
- S Jager
- S Kerrien
- S Orchard
- SD Tekir
- SH Yook
- SM Sahraeian
- T Ideker
- T Ito
- T Klingström
- T MilenkoviÄ
- TM Murali
- V Memišević
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Structural host-microbiota interaction networks
- Author
- A Calderone
- A Dix
- A Gursoy
- A Jenkins
- A Keshavarzian
- A Pichlmair
- AD Kostic
- AL Barabasi
- AP Bhavsar
- AR Wattam
- B de Chassey
- B Hube
- B Kaplan-Turkoz
- BB Finlay
- C Cirl
- CA Moody
- CA Thaiss
- CE Stebbins
- Chung-Jung Tsai
- CJ Tsai
- CJ Tsai
- D Nesic
- DE Serban
- DK Schweppe
- DW Kim
- E Cukuroglu
- E Guven Maiorov
- E Guven-Maiorov
- E Guven-Maiorov
- E Guven-Maiorov
- E Guven-Maiorov
- E Nourani
- EA Franzosa
- EA Franzosa
- EA Franzosa
- Emine Guven-Maiorov
- ES Acuner-Ozbabacan
- F Askarian
- F Scheperjans
- F Wang
- G Le Negrate
- H Jeong
- H Shirin
- H Yang
- H Yu
- HK Pedersen
- IE Brodsky
- J Wang
- JD Han
- JE Trosky
- JS Lichtman
- K Baruch
- K Orth
- KL Siu
- KR Jones
- L Manente
- L Zhang
- M Filippova
- M Gao
- M Muyangwa
- M Urban
- MA Calderwood
- MA Kriegel
- MD Dyer
- MW Covert
- N Iida
- N Sal-Man
- N Subramanian
- O Keskin
- O Keskin
- O Rozenblatt-Rosen
- P Uetz
- PJ Alff
- PJ Kundrotas
- PM Kim
- QC Zhang
- QC Zhang
- R Albert
- R Arnold
- R Greer
- R Kumar
- R Zoraghi
- RA Kahn
- Richard A. Bonneau
- RM Jones
- RM Newman
- Ruth Nussinov
- S Bleves
- S Durmus
- S Durmus Tekir
- S Durmus Tekir
- S Jager
- S Jangi
- S Khadka
- S Muratcioglu
- S Schulze
- SD Shapira
- SK Kwofie
- SM Solbak
- SM Vieira
- SV Royan
- T Guirimand
- T Hagai
- TR Sampson
- UK von Schwedler
- V Vialas
- VA McGuire
- X Chen
- Y Li
- Z Huang
- Z Xiang
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses
- Author
- A Karlas
- A Subramanian
- AC Sims
- AC Sims
- AD Polpitiya
- AL Brass
- Amie J. Eisfeld
- Amy C. Sims
- Amy L. Ellis
- Andrew Pekosz
- Anil K. Shukla
- Arndt G. Benecke
- Athena A. Schepmoes
- B Han
- B Sui
- B Yount
- B Yount
- BJ Webb-Robertson
- BJ Webb-Robertson
- Bobbi-Jo M. Webb-Robertson
- C Ehrhardt
- CG Saris
- Chengjun Li
- D Hurley
- D Marbach
- DL Diamond
- EA Livesay
- EF Donaldson
- GA Versteeg
- GA Zornetzer
- Gabriele Neumann
- GR Kiebel
- H Yoon
- H Yu
- Hugh D. Mitchell
- IK Pang
- J Chen
- J Cui
- J Maelfait
- Jason E. McDermott
- JE McDermott
- JE McDermott
- JE McDermott
- JE McDermott
- Jean H. Chang
- JJ Faith
- JR Tisoncik
- JS Zimmer
- K Pyrc
- Katrina M. Waters
- KM Waters
- KM Waters
- L Hao
- L Zhang
- Laurence Josset
- LJ Herrero
- M Hong
- M Solis
- Maria L. Luna
- ME Monroe
- Melissa M. Matzke
- Michael G. Katze
- ML Fulcher
- MM Becker
- MM Matzke
- MR Thompson
- N Jaitly
- N Kanzawa
- N Katoh
- Nicolas Tchitchek
- P Chitra
- P Hallock
- R Bonneau
- R Edgar
- R Konig
- Ralph S. Baric
- Richard D. Smith
- Robert A. Heegel
- S Durmus Tekir
- SD Shapira
- SL Smits
- Susan C. Tilton
- T Ideker
- T Mizutani
- T Yoshikawa
- Thomas O. Metz
- TO Metz
- VA Petyuk
- Yoshihiro Kawaoka
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs
- Author
- A Alcami
- A Ploss
- A Qureshi
- A Ruepp
- A-L Barabási
- AM Michie
- Austin W. T. Chiang
- B de Chassey
- B de Chassey
- B Hernáez
- BD Lindenbach
- C-N Hsu
- Claus O. Wilke
- CT Jones
- EA Eksioglu
- F Christ
- F Supek
- F Xiao
- G Dennis
- G Song
- G Yu
- GM Di Guglielmo
- GM Fimia
- H Dinkel
- H Zhou
- H-M Wu
- HL Pahl
- I Fabregat
- I Fofana
- J Chen
- J Downward
- J Eckardt-Michel
- J Lupberger
- J Massagué
- J Witteveldt
- J-L Luo
- JM Baugh
- JM Timpe
- JV Lazarus
- K Kandasamy
- KS Ravichandran
- L Kong
- L Zona
- L Zona
- L-J Zhao
- LI Cosen-Binker
- M Ashburner
- M Brazzoli
- M Dorner
- M Kanehisa
- M-F Carlier
- MD Dyer
- ME Reyland
- MH Schaefer
- Ming-Jing Hwang
- MN Zahid
- N Miled
- NE Davey
- O Chertov
- O Rozenblatt-Rosen
- P Evans
- P Ferenci
- P Pileri
- P-Y Ke
- Q Li
- Q Li
- Q Li
- R GuimerÃ
- RB Ray
- S DurmuÅŸ
- S Garamszegi
- S Jamma
- S Panjarian
- S Whittaker
- S-H Choi
- SD Tekir
- SH Lee
- SP Chaki
- T Fawcett
- T Hagai
- T Naas
- T Thieu
- Ting Wang
- TJ Yeatman
- TS Keshava Prasad
- W Mothes
- Walt Y. L. Wu
- Z Liu
- Z-q Yuan
- Zoe H Davis
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
System-wide coordinates of higher order functions in host-pathogen environment upon Mycobacterium tuberculosis infection
- Author
- A Liberzon
- A Liberzon
- A Ramasamy
- A Rana
- A Rana
- AA Beg
- AA Sharov
- AM Talaat
- B Roche
- BS Choudhuri
- C Dresen
- CM Sassetti
- CZ Schneider
- D Kumar
- D Nishimura
- D Sanchez
- D Schnappinger
- DM Mosser
- DR Rhodes
- DR Sherman
- E Abarca-Rojano
- E Dixit
- E Dubnau
- E Garcia-Fernandez
- E Lobet
- E Volpe
- F Dosselaere
- F Hong
- G Huet
- G Mahajan
- H Ouellet
- HH Choi
- HM Algood
- HP Gideon
- J Li
- J Rengarajan
- J Sanz
- JC Chang
- JD McKinney
- JE Griffin
- JK Capyk
- JM Guberman
- JM Pang
- K Mdluli
- K Mushtaq
- KH Yoo
- L Ferguson
- L Franchi
- L Tailleux
- LG Wayne
- LM Karpov
- M Fallahi-Sichani
- M Gengenbacher
- M Kanehisa
- M Yang
- M Yoneyama
- MA Savitskaya
- MG Gutierrez
- MI Voskuil
- MI Voskuil
- MM Wong
- NT Thuong
- O Takeuchi
- O Vergnolle
- P Arun
- P Constant
- P Prakash
- PD Karp
- R Bentley
- R Breitling
- R Geize Van der
- R Kumar
- RI Tapping
- S Benko
- S Cinghu
- S Elmore
- S Haider
- S Homolka
- S Nass
- S Ragno
- S Turkarslan
- S Yellaboina
- SA Churchill
- SB Walters
- SD Tekir
- SE Weinberg
- SJ Sasindran
- SL Kendall
- SL Normand
- T Hussain
- T Parish
- TC Zahrt
- TK Means
- TM Daniel
- TR Rustad
- UD Gupta
- XL Wang
- Y Bulut
- Y Yuan
- YJ Zhang
- YR Fu
- Z Jin
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
- Author
- A Alonso
- A Pichlmair
- AA Grassmann
- AC Lewis
- AL Barabasi
- AL Barabási
- AL Nascimento
- AL Souza de
- AM Stimson
- AR Bharti
- B Adler
- B Chassey De
- BA Shoemaker
- C Chirathaworn
- C Werts
- CC Friedel
- CJ Shin
- CS Yu
- CS Yu
- D Diament
- D Li
- D Szklarczyk
- DA Haake
- DE Fouts
- DJ Watts
- DR Finco
- DW Foster
- DW Huang
- ES Lander
- F Chung
- F Costa
- F Dorigatti
- F Wang
- G Csardi
- G Zhang
- GE Schulz
- HA Rapanoel
- J Garcia-Garcia
- J Krajewska
- J Krajewska
- J Lin
- J Matsunaga
- J Snider
- JM Park
- JM Vinetz
- JN Bandyopadhyay
- K Evangelista
- L Andrade
- L Bonetta
- L Burger
- L-L Zheng
- LG Fernandes
- LR Matthews
- M Ohhira
- M Selbach
- M Vidal
- M Younes-Ibrahim
- M Younes-Ibrahim
- MA Aguiar de
- MD Dyer
- MF Syed
- MJ RodrÃguez-Ortega
- ML Vieira
- ML Vieira
- MM Castiblanco-Valencia
- MM Castiblanco-Valencia
- MM Pereira
- MM Wilson
- MN Wass
- MY Galperin
- N Simonis
- O Krishnadev
- P Aloy
- P Blohm
- P Bourhy
- P Burth
- P Mehrotra
- P Shannon
- PM Beltran
- PN Levett
- PN Levett
- R Albert
- R Albert
- R Overbeek
- R Plank
- RM Ewing
- S Boccaletti
- S Jaeger
- S Lee
- S Li
- S Li
- S Ratnam
- S Schleker
- SD Tekir
- SK Dwivedi
- SL Dong
- SX Ren
- T Huo
- UniProt Consortium
- V Raja
- X Wu
- XH Lai
- Y Dong
- Y Zhang
- ZP Liu
- ZP Liu
- ZY Kuo
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study