Fungal neonatal and infantile sepsis in Egypt: Risk factors and identification of fungal isolates

Background: Invasive fungal diseases (IFDs) are opportunistic infections associated with significant mortality in paediatric patients, especially in those with compromised immune system and neonates with very low birth weight (VLBW). The objectives of this study are to determine the prevalence, clinical features and fungi isolates of neonatal sepsis in three hospitals in Egypt. Methodology: The study is a cross sectional survey of 176 neonates with clinical sepsis admitted to the neonatal intensive care units (NICU) of the three hospitals over a period of one year (February 2015 to January 2016). A minimum of two blood samples (collected within 24 hours) from each neonate were cultured for bacteria in automated BacT/AlerT and conventional culture bottles, while Saboraud-Brain Heart Infusion broth was inoculated for fungi culture. Positive growths from the broth were sub-cultured on Sabouraud Dextrose Agar (SDA) plates for aerobic incubation at 25oC and 37oC for 2 weeks. Identification of fungi colonies on SDA was by conventional morphology and confirmation on chromogenic agar media. Phylogenetic analysis of representative fungi isolates was done by partial nucleotide sequencing of D1-D2 domain of the large subunit rRNA gene. Results: Of the 176 neonates, blood culture was positive for pathogens in 55 (31.3 %) samples and fungi were isolated in 26 (14.8 %); yeast (25) and mould (1). The commonly isolated yeasts were Candida albicans, Candida tropicalis, and Candida krusei representing 34.6%, 30.8% and 23.1%, respectively of the total fungi isolated. The phylogenetic analysis in comparison to Genbank data showed defined clades for Candida tropicalis, Candida parapsilosis, Candida albicans and Pichia kudriavzevii Conclusion: This current study highlights the changing pattern of neonatal infections in Egypt caused by Candida, with increasing incidence of infections caused by non-albicans Candida species. Key words: fungal infection, neonatal, risk factors, PCR, yeas

Thermodynamics of charged and rotating black strings

We study thermodynamics of cylindrically symmetric black holes. Uncharged as well as charged and rotating objects have been discussed. We derive surface gravity and hence the Hawking temperature and entropy for all these cases. We correct some results in the literature and present new ones. It is seen that thermodynamically these black configurations behave differently from spherically symmetric objects

Resource allocation in the cloud for video-on-demand applications using multiple cloud service providers

Abstract Video-on-demand (VoD) applications have become extensively used nowadays. YouTube is one of the most extensively used VoD application. These applications are used for various purposes like entertainment, education, media, etc., of all age groups. Earlier, these applications were supported by private data centers and application servers. Sufficient infrastructure had to be bought and maintained, to support the demand even during unexpected peak times. This approach caused huge loss of resources when the demand is normal as a large portion of the resources remained idle. To overcome this, VoD application providers moved to the cloud, to host their video content’s. This approach reduced the wastage of resources and the maintenance cost of the VoD application provider. The problem is to determine the number of resources to handle the demand while maintaining QoS for every instance. We have designed two algorithms in this paper, namely the multiple cloud resource allocation (MCRA) algorithm and the hybrid MCRA algorithm. Most of the cloud service providers (CSPs) basically provide two types of resource allocation schemes: (i) the reservation scheme and (ii) the on-demand scheme. The reservation scheme provides time-based tariff prices, where the discount is provided for the resources depending on their quantity and reservation time. This scheme is used in the MCRA algorithm to reduce the cost of the VoD application provider. In Hybrid MCRA algorithm both the reservation scheme and on-demand scheme are implemented, to overcome the drawbacks of the MCRA algorithm which are under-subscription and over-subscription. We have analyzed both the algorithms in terms of cost and allocation of resources. These algorithms can help allocate resources in of cloud for VoD applications in a cost-effective way and at the same time not compromise on the QoS of the video content

A cache-based approach toward improved scheduling in fog computing

Fog computing is a promising technique to reduce the latency and power consumption issues of the Internet of Things (IoT) ecosystem by enabling storage and computational resource close to the end-user devices with additional benefits such as improved execution time and processing. However, with an increase in IoT devices, the resource allocation and job scheduling became a complicated and cumbersome task due to limited and heterogeneous resources along with the locality restriction in such computing environment. Therefore, this paper proposes a cache-based approach for efficient resource allocation in fog computing environment, while maintaining the quality of service. The proposed algorithm is realized using iFogSim simulator and a comprehensive comparison is presented with the traditional First Come First Served and Shortest Job First policies. The performance evaluation revealed that with the proposed scheme the execution time, latency, processing delays and power consumption decreased by 38%, 11.1%, 6%, and 17.8%, respectively, as compared to those of the traditional schemes

Considering hormone-sensitive cancers as a single disease in the UK biobank reveals shared aetiology

Hormone-related cancers, including cancers of the breast, prostate, ovaries, uterine, and thyroid, globally contribute to the majority of cancer incidence. We hypothesize that hormone-sensitive cancers share common genetic risk factors that have rarely been investigated by previous genomic studies of site-specific cancers. Here, we show that considering hormone-sensitive cancers as a single disease in the UK Biobank reveals shared genetic aetiology. We observe that a significant proportion of variance in disease liability is explained by the genome-wide single nucleotide polymorphisms (SNPs), i.e., SNP-based heritability on the liability scale is estimated as 10.06% (SE 0.70%). Moreover, we find 55 genome-wide significant SNPs for the disease, using a genome-wide association study. Pair-wise analysis also estimates positive genetic correlations between some pairs of hormone-sensitive cancers although they are not statistically significant. Our finding suggests that heritable genetic factors may be a key driver in the mechanism of carcinogenesis shared by hormone-sensitive cancers.Muktar Ahmed, Ville-Petteri Mäkinen, Anwar Mulugeta, Jisu Shin, Terry Boyle, Elina Hyppönen, Sang Hong Le

Prevalence of <em>Brucella</em> spp. in milk from aborted and non-aborted animals in Dhamar governorate, Yemen

Brucella infection in animals is considered a great problem in most countries of the world. Our study designed to determine the prevalence of brucella in field animal’s milk in Dhamar governorate, Yemen. Total of 808 raw milk samples from non-aborted field animals, 120 milk samples from aborted animals, and 30 pasteurized milk samples were teste by Milk-Ring Test (MRT), milk-ELISA test, isolation and identification of brucella species, and antibiotic susceptibility. The prevalence of brucella in milk samples from field animals was 0.8%, 2.6%, and 2% in cows, sheep, and goat milk samples respectively with MRT, and 0.8%, 1.3% and 1.6% in cows, sheep and goat milk samples respectively with the milk- ELISA test. The prevalence rate in milk samples from aborted animals was 33%, 64% and 41.2% with the MRT and 39%, 49%, and 41.2% in cows, sheep and goats respectively with the milk-ELISA test. All pasteurized milk samples were negative for the milk-ELISA test. The result of isolation showed 0.1% of Brucella in milk samples from field animals while 9.2% from aborted animals. All isolates of Brucella species were sensitivities to rifampicin, doxycycline, kanamycin, gentamicin, streptomycin, tetracycline, and ciprofloxacin, while resistant to ampicillin, erythromycin, and novobiocin. In conclusion, the high prevalence of milk brucella especially in aborted animals needs focusing and build controlling strategies plans to decrease the losses to the economy and avoid transferred to humans with unpasteurized milk consumption

Upgrading Milk Productivity of Primiparous Buffaloes Using Glycogenic Precursors; Implications on Milk Production and Blood Biochemical Parameters

This study was performed to explore the effect of drenching propylene glycol (PG) and calcium propionate (CP) as a source of energy to primiparous Egyptian buffalo cows (Bubalus bubalis) on milk production and some blood biochemical parameters. Eighteen primiparous buffalo cows (8 weeks before calving) with an average live body weight (LBW) of 500±25kg and aged 35±5 months were used. Animals were classified to three comparable groups (6, each) based on (LBW), body condition scores and expected calving date. Animals in the 1stgroup served as a control (C), were drenched 3L of saline solution (NaCl 0.9%) without any additives, the animals in the 2nd group (PG) were drenched 300 mL of propylene glycol dissolved in 3L of a saline solution. In the 3rd group (CP), animals were drenched 335g of calcium propionate dissolved in 3L of a saline solution. Milk production and milk composition of primiparous buffalo cows were measured. Blood samples were collected from all buffalos for biochemical analysis. Results showed significant effects on average daily and total milk yield but no significant difference on milk composition. All blood biochemical parameters revealed no significant variation between treated and control groups except for plasma beta-hydroxy butyrate (BHB) and both T3 and T4 hormones concentrations. The overall mean of BHB in treated (PG) and (CP) was also lower (17.67 and 14.67 vs. 26) than control group. Overall mean of T3 concentration hormone was the lowest in control group represented 3.13 vs. 5.28 and 4.99 ng/ml) for (PG) and (CP) treated group. The highest overall mean of T4 concentration hormone was recorded in (CP) treated group represented 19.55 ng/ml. Concisely, the present results indicate that drenching (PG) and (CP) have a positive effect on the productive traits of primiparous Egyptian buffalo cows while, did not affect the blood biochemical parameters

Digestion, growth performance and caecal fermentation in growing rabbits fed diets containing foliage of browse trees

Feeding foliage from browse trees and shrubs may be of importance in animal production because these resources do not compete with human food and can provide significant amounts of nutrients. Rabbit is increasingly becoming an important meat source and its production is recommended in countries that are experiencing meat shortages, as it presents the best productive advantages to bridge the protein deficiency gap (Abdel-Aziz et al., 2015).This study aimed to evaluate the effect of feeding dried foliage (leaves and petioles) of Acacia saligna, Leucaena leucocephala or Moringa oleifera on the performance, digestibility, N utilisation, caecal fermentation and microbial profiles in New Zealand White (NZW) rabbits. One hundred weaned male NZW rabbits weighing 819.2±16.6 g and aged 35±1 d were randomly allocated into 4 groups of 25 rabbits each. Rabbits were fed on pelleted diets containing 70% concentrate mixture and 30% Egyptian berseem (Trifolium alexandrinum) hay (Control diet) or one of the other 3 experimental diets, where 50% of berseem hay was replaced with A. saligna (AS), L. leucocephala (LL) or M. oleifera (MO). Compared to Control diet, decreases in dry matter (DM; P=0.004), organic matter (P=0.028), crude protein (CP; P=0.001), neutral detergent fibre (P=0.033) and acid detergent fibre (P=0.011) digestibility were observed with the AS diet. However, DM and CP digestibility were increased by 3% with the MO diet, and N utilisation was decreased (P<0.05) with AS. Rabbits fed AS and LL diets showed decreased (P=0.001) average daily gain by 39 and 7%, respectively vs. Control. Feed conversion was similar in Control and MO rabbits, whereas rabbits fed AS diet ate up to 45% more feed (P=0.002) than Control rabbits to gain one kg of body weight. Caecal ammonia-N was increased (P=0.002) with LL, while acetic acid was decreased (P=0.001) with AS diet vs. other treatments. Caecal E. coli and Lactobacillus spp. bacteria counts were decreased with MO by about 44 and 51%, respectively, vs. Control. In conclusion, under the study conditions, tree foliage from M. oleifera and L. leucocephala are suitable fibrous ingredients to be included up to 150 g/kg in the diets of growing rabbits, and can safely replace 50% of berseem hay in diets of NZW rabbits without any adverse effect on their growth performance. Foliage from M. oleifera had a better potential as a feed for rabbits than that from L. leucocephala. Although foliage from A. saliga may be also used at 150 g/kg in the diets of growing rabbits, this level of inclusion may result in reduced feed digestibility and growth performance

S. cerevisiae Srs2 helicase ensures normal recombination intermediate metabolism during meiosis and prevents accumulation of Rad51 aggregates

YesWe investigated the meiotic role of Srs2, a multi-functional DNA helicase/translocase that destabilises Rad51-DNA filaments and is thought to regulate strand invasion and prevent hyper-recombination during the mitotic cell cycle. We find that Srs2 activity is required for normal meiotic progression and spore viability. A significant fraction of srs2 mutant cells progress through both meiotic divisions without separating the bulk of their chromatin, although in such cells sister centromeres often separate. Undivided nuclei contain aggregates of Rad51 colocalised with the ssDNA-binding protein RPA, suggesting the presence of persistent single-strand DNA. Rad51 aggregate formation requires Spo11-induced DSBs, Rad51 strand-invasion activity and progression past the pachytene stage of meiosis, but not the DSB end-resection or the bias towards interhomologue strand invasion characteristic of normal meiosis. srs2 mutants also display altered meiotic recombination intermediate metabolism, revealed by defects in the formation of stable joint molecules. We suggest that Srs2, by limiting Rad51 accumulation on DNA, prevents the formation of aberrant recombination intermediates that otherwise would persist and interfere with normal chromosome segregation and nuclear division.Biotechnology and Biological Sciences Research Council (BB/K009346/1

Self-shielding effect of a single phase liquid xenon detector for direct dark matter search

Liquid xenon is a suitable material for a dark matter search. For future large scale experiments, single phase detectors are attractive due to their simple configuration and scalability. However, in order to reduce backgrounds, they need to fully rely on liquid xenon's self-shielding property. A prototype detector was developed at Kamioka Observatory to establish vertex and energy reconstruction methods and to demonstrate the self-shielding power against gamma rays from outside of the detector. Sufficient self-shielding power for future experiments was obtained.Comment: 8 pages, 8 figure