Analysis of Iron Sources in Antarctic Continental Shelf Waters

Previous studies showed that satellite‐derived estimates of chlorophyll a in coastal polynyas over the Antarctic continental shelf are correlated with the basal melt rate of adjacent ice shelves. A 5‐km resolution ocean/sea ice/ice shelf model of the Southern Ocean is used to examine mechanisms that supply the limiting micronutrient iron to Antarctic continental shelf surface waters. Four sources of dissolved iron are simulated with independent tracers, assumptions about the source iron concentration for each tracer, and an idealized summer biological uptake. Iron from ice shelf melt provides about 6% of the total dissolved iron in surface waters. The contribution from deep sources of iron on the shelf (sediments and Circumpolar Deep Water) is much larger at 71%. The relative contribution of dissolved iron supply from basal melt driven overturning circulation within ice shelf cavities is heterogeneous around Antarctica, but at some locations, such as the Amundsen Sea, it is the primary mechanism for transporting deep dissolved iron to the surface. Correlations between satellite chlorophyll a in coastal polynyas around Antarctica and simulated dissolved iron confirm the previous suggestion that productivity of the polynyas is linked to the basal melt of adjacent ice shelves. This correlation is the result of upward advection or mixing of iron‐rich deep waters due to circulation changes driven by ice shelf melt, rather than a direct influence of iron released from melting ice shelves. This dependence highlights the potential vulnerability of coastal Antarctic ecosystems to changes in ice shelf basal melt rates

Sensitivity of the Relationship Between Antarctic Ice Shelves and Iron Supply to Projected Changes in the Atmospheric Forcing

Upward advection or mixing of iron-rich deep waters due to circulation changes driven by the rate of basal ice shelf melt was shown to be a primary control on chlorophyll a production in coastal polynyas over the Antarctic continental shelf. Here, the effects of atmospheric changes projected in 2100 on this relationship were examined with a 5-km resolution ocean/sea ice/ice shelf model of the Southern Ocean with different simulated dissolved iron sources and idealized biological uptake. The atmospheric changes are added as idealized increments to the forcing. Inclusion of a poleward shift and strengthening of the winds, increased precipitation, and warmer atmospheric temperatures resulted in doubling of the heat advected onto the continental shelf and an 83% increase in the total Antarctic ice shelf basal melt. The total dissolved iron supply to the surface waters over the continental shelf increased by 62%, while the surface iron supply due just to basal melt driven overturning increased by 48%. However, even though the ice shelf driven contribution becomes less important to the total iron supply on average (29% of total), the ice shelf involvement becomes relatively even more important in some locations, such as the Amundsen and Bellingshausen Seas. The modified atmospheric conditions also produced a reduction in summer sea ice extent and a shoaling of the summer mixed layers. These simulated responses to projected changes suggest relief of light and nutrient limitation for phytoplankton blooms over the Antarctic continental shelf and perhaps an increase in annual production in years to come

FlyBase 101 – the basics of navigating FlyBase

FlyBase (http://flybase.org) is the leading database and web portal for genetic and genomic information on the fruit fly Drosophila melanogaster and related fly species. Whether you use the fruit fly as an experimental system or want to apply Drosophila biological knowledge to another field of study, FlyBase can help you successfully navigate the wealth of available Drosophila data. Here, we review the FlyBase web site with novice and less-experienced users of FlyBase in mind and point out recent developments stemming from the availability of genome-wide data from the modENCODE project. The first section of this paper explains the organization of the web site and describes the report pages available on FlyBase, focusing on the most popular, the Gene Report. The next section introduces some of the search tools available on FlyBase, in particular, our heavily used and recently redesigned search tool QuickSearch, found on the FlyBase homepage. The final section concerns genomic data, including recent modENCODE (http://www.modencode.org) data, available through our Genome Browser, GBrowse

‘I had to pop a wheelie and pay extra attention in order not to fall:’ embodied experiences of two wheelchair tennis athletes transgressing ableist and gendered norms in disability sport and university spaces

When bodies move in certain contexts, it can mean very different things for different people. In our society, some bodies are more valued than others, and detrimentally, this can mean that certain types of bodies are ostracised and segregated to the outskirts of production economies and society. Dis/ability sport spaces, able-bodied sports spaces and able-bodied university spaces have been an under-researched area when considering how the body moves throughout these spaces for elite wheelchair athletes taking part in university courses. To learn more, this paper drew on feminist poststructuralism and new materialist perspectives and shared an insight into how two athletes with dis/abilities transgressed abled and gendered norms in different spaces and how they positioned themselves as athletic bodies and disabled bodies in these spaces. Employing a post-critical ethnographic design, we found that dependent on the space a dis/abled body is in constant flux as to when it feels marginalised and different (typically able-bodied spaces) and when it feels included, valued, and strong (typically dis/abled spaces). Significantly, the materiality of the institutional structures of universities, founded upon historic aesthetics of beauty dictated the physical spaces the athletes entered and created spaces of exclusion based on capitalist and ableist ideologies

Neutron to proton ratios of quasiprojectile and midrapidity emission in the 64^{64}Zn + 64^{64}Zn reaction at 45 MeV/nucleon

Simultaneous measurement of both neutrons and charged particles emitted in the reaction $^{64}$Zn + $^{64}$Zn at 45 MeV/nucleon allows comparison of the neutron to proton ratio at midrapidity with that at projectile rapidity. The evolution of N/Z in both rapidity regimes with increasing centrality is examined. For the completely re-constructed midrapidity material one finds that the neutron-to-proton ratio is above that of the overall $^{64}$Zn + $^{64}$Zn system. In contrast, the re-constructed ratio for the quasiprojectile is below that of the overall system. This difference provides the most complete evidence to date of neutron enrichment of midrapidity nuclear matter at the expense of the quasiprojectile

Identification of pannexin 1-regulated genes, interactome, and pathways in rhabdomyosarcoma and its tumor inhibitory interaction with AHNAK

Rhabdomyosarcoma (RMS), the most common soft tissue sarcoma in children, is an aggressive cancer with a poor prognosis. Despite current management, the 5-year survival rate for patients with metastatic RMS is ∼30%; underscoring the need to develop better treatment strategies. We have recently reported that pannexin 1 (PANX1) levels are downregulated in RMS and that restoring its expression inhibits RMS progression. Here, we have surveyed and characterized the molecular changes induced by PANX1 re-expression in RMS. We cataloged transcriptomic changes in this context by RNA sequencing. At the protein level, we unveiled PANX1 interactors using BioID, complemented by co-immunoprecipitation coupled to high-performance liquid chromatography/electrospray ionization tandem mass spectrometry performed in PANX1-enriched fractions. Using these data, we generated searchable public databases for the PANX1 interactome and changes to the RMS transcriptome occurring when PANX1 expression is restored. STRING network analyses revealed a PANX1 interactome involving plasma membrane and cytoskeleton-associated proteins including the previously undescribed interactor AHNAK. Indeed, AHNAK knockdown abrogated the PANX1-mediated reduction in RMS cell viability and migration. Using these unbiased approaches, we bring insight to the mechanisms by which PANX1 inhibits RMS progression, identifying the cell migration protein AHNAK as a key modifier of PANX1-mediated changes in RMS malignant properties

Functional characterization of a melon alcohol acyl-transferase gene family involved in the biosynthesis of ester volatiles. Identification of the crucial role of a threonine residue for enzyme activity

Volatile esters, a major class of compounds contributing to the aroma of many fruit, are synthesized by alcohol acyl-transferases (AAT). We demonstrate here that, in Charentais melon (Cucumis melo var. cantalupensis), AAT are encoded by a gene family of at least four members with amino acid identity ranging from 84% (Cm-AAT1/Cm-AAT2) and 58% (Cm-AAT1/Cm-AAT3) to only 22% (Cm-AAT1/Cm-AAT4). All encoded proteins, except Cm-AAT2, were enzymatically active upon expression in yeast and show differential substrate preferences. Cm-AAT1 protein produces a wide range of short and long-chain acyl esters but has strong preference for the formation of E-2-hexenyl acetate and hexyl hexanoate. Cm-AAT3 also accepts a wide range of substrates but with very strong preference for producing benzyl acetate. Cm-AAT4 is almost exclusively devoted to the formation of acetates, with strong preference for cinnamoyl acetate. Site directed mutagenesis demonstrated that the failure of Cm-AAT2 to produce volatile esters is related to the presence of a 268-alanine residue instead of threonine as in all active AAT proteins. Mutating 268-A into 268-T of Cm-AAT2 restored enzyme activity, while mutating 268-T into 268-A abolished activity of Cm-AAT1. Activities of all three proteins measured with the prefered substrates sharply increase during fruit ripening. The expression of all Cm-AAT genes is up-regulated during ripening and inhibited in antisense ACC oxidase melons and in fruit treated with the ethylene antagonist 1-methylcyclopropene (1-MCP), indicating a positive regulation by ethylene. The data presented in this work suggest that the multiplicity of AAT genes accounts for the great diversity of esters formed in melon