28 research outputs found
Analytical study of the effect of recombination on evolution via DNA shuffling
We investigate a multi-locus evolutionary model which is based on the DNA
shuffling protocol widely applied in \textit{in vitro} directed evolution. This
model incorporates selection, recombination and point mutations. The simplicity
of the model allows us to obtain a full analytical treatment of both its
dynamical and equilibrium properties, for the case of an infinite population.
We also briefly discuss finite population size corrections
Logarithmic perturbation theory for quasinormal modes
Logarithmic perturbation theory (LPT) is developed and applied to quasinormal
modes (QNMs) in open systems. QNMs often do not form a complete set, so LPT is
especially convenient because summation over a complete set of unperturbed
states is not required. Attention is paid to potentials with exponential tails,
and the example of a Poschl-Teller potential is briefly discussed. A numerical
method is developed that handles the exponentially large wavefunctions which
appear in dealing with QNMs.Comment: 24 pages, 4 Postscript figures, uses ioplppt.sty and epsfig.st
On Propagation of Excitation Waves in Moving Media: The FitzHugh-Nagumo Model
BACKGROUND: Existence of flows and convection is an essential and integral feature of many excitable media with wave propagation modes, such as blood coagulation or bioreactors. METHODS/RESULTS: Here, propagation of two-dimensional waves is studied in parabolic channel flow of excitable medium of the FitzHugh-Nagumo type. Even if the stream velocity is hundreds of times higher that the wave velocity in motionless medium (), steady propagation of an excitation wave is eventually established. At high stream velocities, the wave does not span the channel from wall to wall, forming isolated excited regions, which we called "restrictons". They are especially easy to observe when the model parameters are close to critical ones, at which waves disappear in still medium. In the subcritical region of parameters, a sufficiently fast stream can result in the survival of excitation moving, as a rule, in the form of "restrictons". For downstream excitation waves, the axial portion of the channel is the most important one in determining their behavior. For upstream waves, the most important region of the channel is the near-wall boundary layers. The roles of transversal diffusion, and of approximate similarity with respect to stream velocity are discussed. CONCLUSIONS: These findings clarify mechanisms of wave propagation and survival in flow
Generalized eigenfunctions and spectral theory for strongly local Dirichlet forms
We present an introduction to the framework of strongly local Dirichlet forms
and discuss connections between the existence of certain generalized
eigenfunctions and spectral properties within this framework. The range of
applications is illustrated by a list of examples
On the relationship between the load and the variance of relative fitness
Abstract Background Operation of natural selection can be characterized by a variety of quantities. Among them, variance of relative fitness V and load L are the most fundamental. Results Among all modes of selection that produce a particular value V of the variance of relative fitness, the minimal value Lmin of load L is produced by a mode under which fitness takes only two values, 0 and some positive value, and is equal to V/(1+V). Conclusions Although it is impossible to deduce the load from knowledge of the variance of relative fitness alone, it is possible to determine the minimal load consistent with a particular variance of relative fitness. The concept of minimal load consistent with a particular biological phenomenon may be applicable to studying several aspects of natural selection. Reviewers The manuscript was reviewed by Sergei Maslov, Alexander Gordon, and Eugene Koonin.</p