Editorial: Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut

Herbivores play an important role in the survival of humanity, contributing food and textiles, as well as social and economic value. For decades, optimizing the productivity, health, welfare, and environmental footprint of herbivorous animals, particularly ruminant livestock, has been the subject of an extensive, global research effort. Much of this research effort has focused on the herbivore gut. The specialized nature of the herbivore digestive tract and its resident microbes enables the breakdown of highly fibrous plant materials, which are unable to be utilized by omnivores and carnivores. In recent years, the bacteria and methanogenic archaea have been the major focus of research efforts, with the other gut microbes being understudied in comparison

Probing the evolution of electronic phase-coexistence in complex systems by terahertz radiation

In complex oxides, the electrons under the influence of competing energetics are the cornerstone of coexistence (or phase-separation) of two or more electronic/magnetic phases in same structural configuration. Probing of growth and evolution of such phase-coexistence state is crucial to determine the correct mechanism of related phase-transition. Here, we demonstrate the combination of terahertz (THz) time-domain spectroscopy and DC transport as a novel strategy to probe the electronic phase-coexistence. This is demonstrated in disorder controlled phase-separated rare-earth nickelate thin films which exhibit metal-insulator transition in dc conductivity at around 180 K but lack this transition in terahertz (THz) dynamics conductivity down to low temperature. Such pronounced disparity exploits two extreme attributes: i) enormous sensitivity of THz radiation to a spatial range of its wavelength-compatible electronic inhomogeneities and ii) insensitivity to a range beyond the size of its wavelength. This feature is generic in nature (sans a photo-induced effect), depends solely on the size of insulating/metallic clusters and formulates a methodology with unique sensitivity to investigate electronic phase-coexistence and phase transition of any material system

Quantification of crop weather relationship and the effect of different planting dates on growth and yield of potato cultivars in a sub-tropical environment at Hisar

Field experiments were carried out at research farm of Department of Agricultural Meteorology, CCSHAU, Hisar during Rabi seasons of 2016-17 to quantify crop weather relationship and the effect of different planting dates on growth and yield of potato cultivars in a sub-tropical environment at Hisar. The experimental field was adjacent to Agro-meteorological observatory at 290 10' N latitude, 750 46' E longitude and altitude of 215.2 m. The main plots treatments consisted four date of sowing viz. D1- 8th Oct., D2-22th Oct., D3- 5th Nov. and D4- 23rd Nov. The sub-plots treatment consisted of three varieties (V1- Kufri Bahar, V2- Kufri Pushkar and V3- Kufri Surya). The forty eight treatment combinations were tested in split plot design with four replications. The results revealed that various growth and yield observations were recorded higher in second sown crop (22th Oct.) as followed by other planting dates. The maximum tuber yield were produced in D2 (20810.45 kg/ha) and it was least in D4 (14525.46 kg/ha). Among the varieties, Kufri Pushkar recorded highest tuber yield (21478.06 kg/ha) followed by Kufri Bahar (17432.26 kg/ha) and Kufri Surya (15378.11 kg/ha). In crop weather relationship, Tuber yield and plant height were significantly positively correlated with rainfall (0.80 and 0.92) and rainy days (0.50 and 0.53). Evening relative humidity was also positively correlated with LAI (0.59) and tuber yield (0.78) of potato. Vegetables production is considered to be particularly important in satisfying world food demand. Specific research therefore is needed in order to evaluate the effects of environmental factors that crop encounters during its growth period and its production

New aspects and strategies for methane mitigation from ruminants.

The growing demand for sustainable animal production is compelling researchers to explore the potential approaches to reduce emissions of greenhouse gases from livestock that are mainly produced by enteric fermentation. Some potential solutions, for instance, the use of chemical inhibitors to reduce methanogenesis, are not feasible in routine use due to their toxicity to ruminants, inhibition of efficient rumen function or other transitory effects. Strategies, such as use of plant secondary metabolites and dietary manipulations have emerged to reduce the methane emission, but these still require extensive research before these can be recommended and deployed in the livestock industry sector. Furthermore, immunization vaccines for methanogens and phages are also under investigation for mitigation of enteric methanogenesis. The increasing knowledge of methanogenic diversity in rumen, DNA sequencing technologies and bioinformatics have paved the way for chemogenomic strategies by targeting methane producers. Chemogenomics will help in finding target enzymes and proteins, which will further assist in the screening of natural as well chemical inhibitors. The construction of a methanogenic gene catalogue through these approaches is an attainable objective. This will lead to understand the microbiome function, its relation with the host and feeds, and therefore, will form the basis of practically viable and eco-friendly methane mitigation approaches, while improving the ruminant productivity

Anomalous formation of trihydrogen cations from water on nanoparticles

The H3 + ion plays a key role in interstellar chemistry and can be formed from organic compounds upon interaction with charged particles or radiation. Here the authors demonstrate that H3 + can also be formed from water adsorbed on silica nanoparticles exposed to intense laser pulses, conditions that mimic the impact of charged particles on dust in astrophysical settings

Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage

Survival and growth of the anaerobic gut fungi (AGF; Neocallimastigomycota) in the herbivorous gut necessitate the possession of multiple abilities absent in other fungal lineages. We hypothesized that horizontal gene transfer (HGT) was instrumental in forging the evolution of AGF into a phylogenetically distinct gut-dwelling fungal lineage. The patterns of HGT were evaluated in the transcriptomes of 27 AGF strains, 22 of which were isolated and sequenced in this study, and 4 AGF genomes broadly covering the breadth of AGF diversity. We identified 277 distinct incidents of HGT in AGF transcriptomes, with subsequent gene duplication resulting in an HGT frequency of 2 to 3.5% in AGF genomes. The majority of HGT events were AGF specific (91.7%) and wide (70.8%), indicating their occurrence at early stages of AGF evolution. The acquired genes allowed AGF to expand their substrate utilization range, provided new venues for electron disposal, augmented their biosynthetic capabilities, and facilitated their adaptation to anaerobiosis. The majority of donors were anaerobic fermentative bacteria prevalent in the herbivorous gut. This study strongly indicates that HGT indispensably forged the evolution of AGF as a distinct fungal phylum and provides a unique example of the role of HGT in shaping the evolution of a high-rank taxonomic eukaryotic lineage.IMPORTANCE The anaerobic gut fungi (AGF) represent a distinct basal phylum lineage (Neocallimastigomycota) commonly encountered in the rumen and alimentary tracts of herbivores. Survival and growth of anaerobic gut fungi in these anaerobic, eutrophic, and prokaryote-dominated habitats necessitates the acquisition of several traits absent in other fungal lineages. We assess here the role of horizontal gene transfer as a relatively fast mechanism for trait acquisition by the Neocallimastigomycota postsequestration in the herbivorous gut. Analysis of 27 transcriptomes that represent the broad diversity of Neocallimastigomycota identified 277 distinct HGT events, with subsequent gene duplication resulting in an HGT frequency of 2 to 3.5% in AGF genomes. These HGT events have allowed AGF to survive in the herbivorous gut by expanding their substrate utilization range, augmenting their biosynthetic pathway, providing new routes for electron disposal by expanding fermentative capacities, and facilitating their adaptation to anaerobiosis. HGT in the AGF is also shown to be mainly a cross-kingdom affair, with the majority of donors belonging to the bacteria. This study represents a unique example of the role of HGT in shaping the evolution of a high-rank taxonomic eukaryotic lineage