The Emergence of El-Ni\~{n}o as an Autonomous Component in the Climate Network

We construct and analyze a climate network which represents the interdependent structure of the climate in different geographical zones and find that the network responds in a unique way to El-Ni\~{n}o events. Analyzing the dynamics of the climate network shows that when El-Ni\~{n}o events begin, the El-Ni\~{n}o basin partially loses its influence on its surroundings. After typically three months, this influence is restored while the basin loses almost all dependence on its surroundings and becomes \textit{autonomous}. The formation of an autonomous basin is the missing link to understand the seemingly contradicting phenomena of the afore--noticed weakening of the interdependencies in the climate network during El-Ni\~{n}o and the known impact of the anomalies inside the El-Ni\~{n}o basin on the global climate system.Comment: 5 pages,10 figure

Conjunto básico de marcadores de microsatélites identificados para el uso en estudios de genética de poblaciones en calamón común (Porphyrio porphyrio) en Java

Las poblaciones de calamón común han descendido en algunas partes del mundo debido a la degradación de los humedales y la caza furtiva. Los esfuerzos de conservación podrían beneficiarse de los estudios de genética de poblaciones que emplean marcadores de microsatélites. Aquí se describe la selección de los marcadores adecuados para tal estudio. Se han probado estos marcadores frente a la presencia de alelos nulos y desequilibrio gamético. De catorce loci candidatos, diez muestran una frecuencia de alelo nulo menor de 0,2 y no poseen desequilibrio de ligamiento significativo. Los loci seleccionados no presentaron desviación del equilibrio de Hardy–Weinberg (HWE) y tienen un contenido de información polimórfica (PIC) medio de 0,516. Sobre la base de esta prueba, se sugiere que estos loci deben ser incluidos en estudios de genética de poblaciones de esta especie.Populations of Purple Swamphen have been declining in some parts of the world due to wetland degradation and poaching. Conservation efforts might benefit from population genetic studies using microsatellite markers. Here we describe the selection of microsatellite markers suitable for such studies. We tested the markers against the evidence of the null alleles and gametic disequilibrium. From fourteen candidate loci, ten displayed a null alleles frequency of less than 0.2 and had no significant linkage disequilibrium. The selected loci showed no deviation from HWE and had a mean polymorphic information content of 0.516. Based on the test, we suggest these loci are suitable for population genetic studies of the species.Las poblaciones de calamón común han descendido en algunas partes del mundo debido a la degradación de los humedales y la caza furtiva. Los esfuerzos de conservación podrían beneficiarse de los estudios de genética de poblaciones que emplean marcadores de microsatélites. Aquí se describe la selección de los marcadores adecuados para tal estudio. Se han probado estos marcadores frente a la presencia de alelos nulos y desequilibrio gamético. De catorce loci candidatos, diez muestran una frecuencia de alelo nulo menor de 0,2 y no poseen desequilibrio de ligamiento significativo. Los loci seleccionados no presentaron desviación del equilibrio de Hardy–Weinberg (HWE) y tienen un contenido de información polimórfica (PIC) medio de 0,516. Sobre la base de esta prueba, se sugiere que estos loci deben ser incluidos en estudios de genética de poblaciones de esta especie

Gaussian capacity of the quantum bosonic channel with additive correlated Gaussian noise

We present an algorithm for calculation of the Gaussian classical capacity of a quantum bosonic memory channel with additive Gaussian noise. The algorithm, restricted to Gaussian input states, is applicable to all channels with noise correlations obeying certain conditions and works in the full input energy domain, beyond previous treatments of this problem. As an illustration, we study the optimal input states and capacity of a quantum memory channel with Gauss-Markov noise [J. Sch\"afer, Phys. Rev. A 80, 062313 (2009)]. We evaluate the enhancement of the transmission rate when using these optimal entangled input states by comparison with a product coherent-state encoding and find out that such a simple coherent-state encoding achieves not less than 90% of the capacity.Comment: 12+6 pages, 9 figures. Errors corrected, figures were made clearer, appendix improved and extende

Development and evaluation of an enterovirus D68 real-time reverse transcriptase PCR assay

We have developed and evaluated a real-time reverse transcriptase PCR (RT-PCR) assay for the detection of human enterovirus D68 (EV-D68) in clinical specimens. This assay was developed in response to the unprecedented 2014 nationwide EV-D68 outbreak in the United States associated with severe respiratory illness. As part of our evaluation of the outbreak, we sequenced and published the genome sequence of the EV-D68 virus circulating in St. Louis, MO. This sequence, along with other GenBank sequences from past EV-D68 occurrences, was used to computationally select a region of EV-D68 appropriate for targeting in a strain-specific RT-PCR assay. The RT-PCR assay amplifies a segment of the VP1 gene, with an analytic limit of detection of 4 copies per reaction, and it was more sensitive than commercially available assays that detect enteroviruses and rhinoviruses without distinguishing between the two, including three multiplex respiratory panels approved for clinical use by the FDA. The assay did not detect any other enteroviruses or rhinoviruses tested and did detect divergent strains of EV-D68, including the first EV-D68 strain (Fermon) identified in California in 1962. This assay should be useful for identifying and studying current and future outbreaks of EV-D68 viruses

Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway

*Background*
It has been previously reported that most mammalian genes display a circadian oscillation in their baseline expression. Consequently, the phase and amplitude of each component of a signal transduction cascade has downstream consequences. 

*Results*
We report our analysis of alternative transcripts in the leptin signaling pathway which is responsible for the systemic regulation of macronutrient storage and energy balance. We focused on the circadian expression pattern of a critical component of the leptin signaling system, suppressor of cytokine signaling 3 (SOCS3). On an Affymetrix GeneChip 430A2 microarray, this gene is represented by three probe sets targeting different regions within the 3’ end of the last exon. We demonstrate that in murine brown adipose tissue two downstream 3’ probe sets experience circadian baseline oscillation in counter-phase to the upstream probe set. Such differences in expression patterns are a telltale sign of alternative splicing within the last exon of SOCS3. In contrast, all three probe sets oscillated in a common phase in murine liver and white adipose tissue. This suggests that the regulation of SOCS3 expression in brown fat is tissue specific. Another component of the signaling pathway, Janus kinase (JAK), is directly regulated by SOCS and has alternative transcript probe sets oscillating in counter-phase in a white adipose tissue specific manner.
 
*Conclusion*
We hypothesize that differential oscillation of alternative transcripts may provide a mechanism to maintain steady levels of expression in spite of circadian baseline variation

Viral DNAemia and DNA virus seropositivity and mortality in pediatric sepsis

IMPORTANCE: Sepsis is a leading cause of pediatric mortality. Little attention has been paid to the association between viral DNA and mortality in children and adolescents with sepsis. OBJECTIVE: To assess the association of the presence of viral DNA with sepsis-related mortality in a large multicenter study. DESIGN, SETTING, AND PARTICIPANTS: This cohort study compares pediatric patients with and without plasma cytomegalovirus (CMV), Epstein-Barr virus (EBV), herpes simplex virus 1 (HSV-1), human herpesvirus 6 (HHV-6), parvovirus B19 (B19V), BK polyomavirus (BKPyV), human adenovirus (HAdV), and torque teno virus (TTV) DNAemia detected by quantitative real-time polymerase chain reaction or plasma IgG antibodies to CMV, EBV, HSV-1, or HHV-6. A total of 401 patients younger than 18 years with severe sepsis were enrolled from 9 pediatric intensive care units (PICUs) in the Eunice Kennedy Shriver National Institute of Child Health and Human Development Collaborative Pediatric Critical Care Research Network. Data were collected from 2015 to 2018. Samples were assayed from 2019 to 2022. Data were analyzed from 2022 to 2023. MAIN OUTCOMES AND MEASURES: Death while in the PICU. RESULTS: Among the 401 patients included in the analysis, the median age was 6 (IQR, 1-12) years, and 222 (55.4%) were male. One hundred fifty-four patients (38.4%) were previously healthy, 108 (26.9%) were immunocompromised, and 225 (56.1%) had documented infection(s) at enrollment. Forty-four patients (11.0%) died in the PICU. Viral DNAemia with at least 1 virus (excluding TTV) was detected in 191 patients (47.6%) overall, 63 of 108 patients (58.3%) who were immunocompromised, and 128 of 293 (43.7%) who were not immunocompromised at sepsis onset. After adjustment for age, Pediatric Risk of Mortality score, previously healthy status, and immunocompromised status at sepsis onset, CMV (adjusted odds ratio [AOR], 3.01 [95% CI, 1.36-6.45]; P = .007), HAdV (AOR, 3.50 [95% CI, 1.46-8.09]; P = .006), BKPyV (AOR. 3.02 [95% CI, 1.17-7.34]; P = .02), and HHV-6 (AOR, 2.62 [95% CI, 1.31-5.20]; P = .007) DNAemia were each associated with increased mortality. Two or more viruses were detected in 78 patients (19.5%), with mortality among 12 of 32 (37.5%) who were immunocompromised and 9 of 46 (19.6%) who were not immunocompromised at sepsis onset. Herpesvirus seropositivity was common (HSV-1, 82 of 246 [33.3%]; CMV, 107 of 254 [42.1%]; EBV, 152 of 251 [60.6%]; HHV-6, 253 if 257 [98.4%]). After additional adjustment for receipt of blood products in the PICU, EBV seropositivity was associated with increased mortality (AOR, 6.10 [95% CI, 1.00-118.61]; P = .049). CONCLUSIONS AND RELEVANCE: The findings of this cohort study suggest that DNAemia for CMV, HAdV, BKPyV, and HHV-6 and EBV seropositivity were independently associated with increased sepsis mortality. Further investigation of the underlying biology of these viral DNA infections in children with sepsis is warranted to determine whether they only reflect mortality risk or contribute to mortality

Maximal height statistics for 1/f^alpha signals

Numerical and analytical results are presented for the maximal relative height distribution of stationary periodic Gaussian signals (one dimensional interfaces) displaying a 1/f^alpha power spectrum. For 0<alpha<1 (regime of decaying correlations), we observe that the mathematically established limiting distribution (Fisher-Tippett-Gumbel distribution) is approached extremely slowly as the sample size increases. The convergence is rapid for alpha>1 (regime of strong correlations) and a highly accurate picture gallery of distribution functions can be constructed numerically. Analytical results can be obtained in the limit alpha -> infinity and, for large alpha, by perturbation expansion. Furthermore, using path integral techniques we derive a trace formula for the distribution function, valid for alpha=2n even integer. From the latter we extract the small argument asymptote of the distribution function whose analytic continuation to arbitrary alpha > 1 is found to be in agreement with simulations. Comparison of the extreme and roughness statistics of the interfaces reveals similarities in both the small and large argument asymptotes of the distribution functions.Comment: 17 pages, 8 figures, RevTex

Antibiotikaeinsatz in der Bayerischen Schweinehaltungspraxis ABYS: Antibiotikaeinsatz und Antibiotikaresistenz in ökologischen Betrieben

Between 2012 and 2014, ABYS study recorded antibiotic use, detection and resistance data for 23 organic and 35 conventional pig farms. Antibiotic contents of farm-made fertilizers were assessed by LC/MS-MS. Phenotypic antimicrobial resistance was investigated in Escherichia (E.) coli (indicator bacteria); antimicrobial resistance genes of the total bacterial microbiota (sul(II), tet(A), tet(B), tet(M); marker Measured in nUDD (number of animals treated multiplied by treatment days), colistin was the most frequently used antibiotic, in organic farms followed by tylosin, doxycycline and amoxicillin. Antibiotic residues were rarely detected; however, manure contained up to 10^8 antimicrobial resistance genes per gram; concentrations were higher when the antibiotic had been used on farm. In six farms, antimicrobial resistant E. coli were tracked from the moment when pigs were placed on farm. Some isolates carried a broad variety of resistances from the very beginning that were maintained until slaughter, despite the fact that partly no antibiotics were applied during fattening. Approaches for reducing carry-over of antimicrobial resistant bacteria will be discusse

When will trends in European mean and heavy daily precipitation emerge?

A multi-model ensemble of regional climate projections for Europe is employed to investigate how the time of emergence (TOE) for seasonal sums and maxima of daily precipitation depends on spatial scale. The TOE is redefined for emergence from internal variability only; the spread of the TOE due to imperfect climate model formulation is used as a measure of uncertainty in the TOE itself. Thereby, the TOE becomes a fundamentally limiting timescale and translates into a minimum spatial scale on which robust conclusions can be drawn about precipitation trends. Thus, minimum temporal and spatial scales for adaptation planning are also given. In northern Europe, positive winter trends in mean and heavy precipitation, and in southwestern and southeastern Europe, summer trends in mean precipitation already emerge within the next few decades. However, across wide areas, especially for heavy summer precipitation, the local trend emerges only late in the 21st century or later. For precipitation averaged to larger scales, the trend, in general, emerges earlier