Comparative pan-genome analysis of Piscirickettsia salmonis reveals genomic divergences within genogroups

Indexación: Scopus.Piscirickettsia salmonis is the etiological agent of salmonid rickettsial septicemia, a disease that seriously affects the salmonid industry. Despite efforts to genomically characterize P. salmonis, functional information on the life cycle, pathogenesis mechanisms, diagnosis, treatment, and control of this fish pathogen remain lacking. To address this knowledge gap, the present study conducted an in silico pan-genome analysis of 19 P. salmonis strains from distinct geographic locations and genogroups. Results revealed an expected open pan-genome of 3,463 genes and a core-genome of 1,732 genes. Two marked genogroups were identified, as confirmed by phylogenetic and phylogenomic relationships to the LF-89 and EM-90 reference strains, as well as by assessments of genomic structures. Different structural configurations were found for the six identified copies of the ribosomal operon in the P. salmonis genome, indicating translocation throughout the genetic material. Chromosomal divergences in genomic localization and quantity of genetic cassettes were also found for the Dot/Icm type IVB secretion system. To determine divergences between core-genomes, additional pan-genome descriptions were compiled for the so-termed LF and EM genogroups. Open pan-genomes composed of 2,924 and 2,778 genes and core-genomes composed of 2,170 and 2,228 genes were respectively found for the LF and EM genogroups. The core-genomes were functionally annotated using the Gene Ontology, KEGG, and Virulence Factor databases, revealing the presence of several shared groups of genes related to basic function of intracellular survival and bacterial pathogenesis. Additionally, the specific pan-genomes for the LF and EM genogroups were defined, resulting in the identification of 148 and 273 exclusive proteins, respectively. Notably, specific virulence factors linked to adherence, colonization, invasion factors, and endotoxins were established. The obtained data suggest that these genes could be directly associated with inter-genogroup differences in pathogenesis and host-pathogen interactions, information that could be useful in designing novel strategies for diagnosing and controlling P. salmonis infection. © 2017 Nourdin-Galindo, Sánchez, Molina, Espinoza-Rojas, Oliver, Ruiz, Vargas-Chacoff, Cárcamo, Figueroa, Mancilla, Maracaja-Coutinho and Yañez.https://www.frontiersin.org/articles/10.3389/fcimb.2017.00459/ful

Epidemiología molecular y análisis filogenético de la infección por el virus del papiloma humano en mujeres con lesiones cervicales y cáncer en la región litoral del Ecuador

The aim of the present study was to gather information regarding the molecular epidemiology of Human papillomavirus (HPV) and related risk factors in a group of women with low- and high-grade cervical lesions and cancer from the coastal region of Ecuador. In addition, we studied the evolution of HPV variants from the most prevalent types and provided a temporal framework for their emergence, which may help to trace the source of dissemination within the region. We analyzed 166 samples, including 57 CIN1, 95 CIN2/3 and 14 cancer cases. HPV detection and typing was done by PCR-sequencing (MY09/MY11). HPV variants and estimation of the time to most recent common ancestor (tMRCA) was assessed through phylogeny and coalescence analysis. HPV DNA was found in 54.4% of CIN1, 74.7% of CIN2/3 and 78.6% of cancer samples. HPV16 (38.9%) and HPV58 (19.5%) were the most prevalent types. Risk factors for the development of cervical lesions/cancer were the following: three or more pregnancies (OR = 4.3), HPV infection (OR = 3.7 for high-risk types; OR = 3.5 for HPV16), among others. With regard to HPV evolution, HPV16 isolates belonged to lineages A (69%) and D (31%) whereas HPV58 isolates belonged only to lineage A. The period of emergence of HPV16 was in association with human populations (tMRCA = 91. 052 years for HPV16A and 27. 000 years for HPV16D), whereas HPV58A preceded Homo sapiens evolution (322. 257 years). This study provides novel data on HPV epidemiology and evolution in Ecuador, which will be fundamental in the vaccine era.Fil: Bedoya Pilozo, Cesar H.. Escuela Superior Politécnica del Litoral; Ecuador. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Medina Magües, Lex G.. Escuela Superior Politécnica del Litoral; EcuadorFil: Espinosa García, Maylen. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Sánchez, Martha. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Parrales Valdiviezo, Johanna V.. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Molina, Denisse. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Ibarra, María A.. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Quimis Ponce, María. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: España, Karool. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Párraga Macias, Karla E.. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Cajas Flores, Nancy V.. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Solon, Orlando A.. Instituto Nacional de Investigaciones en Salud Pública; Ecuador. Universidad Agraria del Ecuador; EcuadorFil: Robalino Penaherrera, Jorge A.. Instituto Nacional de Investigaciones en Salud Pública; EcuadorFil: Chedraui, Peter. Hospital Gineco-Obstétrico Enrique C. Sotomayor; EcuadorFil: Escobar, Saul. Universidad Católica de Guayaquil; EcuadorFil: Loja Chango, Rita D.. Universidad Católica de Guayaquil; EcuadorFil: Ramirez Morán, Cecibel. Universidad Católica de Guayaquil; EcuadorFil: Espinoza Caicedo, Jasson. Universidad Católica de Guayaquil; EcuadorFil: Sánchez Giler, Sunny. Universidad Especialidades Espíritu Santo. Facultad de Ciencias Médicas; EcuadorFil: Limia, Celia M.. Instituto de Medicina Tropical Pedro Kouri; CubaFil: Alemán, Yoan. Instituto de Medicina Tropical Pedro Kouri; CubaFil: Soto, Yudira. Instituto de Medicina Tropical Pedro Kouri; CubaFil: Kouri, Vivian. Instituto de Medicina Tropical Pedro Kouri; CubaFil: Culasso, Andrés Carlos Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Virología; ArgentinaFil: Badano, Ines. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Secretaría de Educación Superior, Ciencia, Tecnología e Innovación; Ecuador. Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Laboratorio de Biología Molecular Aplicada; Argentin

Stellar Populations in the Galactic Center

We discuss the stellar content of the Galactic Center, and in particular, recent estimates of the star formation rate (SFR). We discuss pros and cons of the different stellar tracers and focus our attention on the SFR based on the three classical Cepheids recently discovered in the Galactic Center. We also discuss stellar populations in field and cluster stars and present some preliminary results based on near-infrared photometry of a field centered on the young massive cluster Arches. We also provide a new estimate of the true distance modulus to the Galactic Center and we found 14.49$\pm$0.02(standard)$\pm$0.10(systematic) mag (7.91$\pm0.08\pm0.40$ kpc). Current estimate agrees quite well with similar photometric and kinematic distance determinations available in the literature. We also discuss the metallicity gradient of the thin disk and the sharp change in the slope when moving across the edge of the inner disk, the Galactic Bar and the Galactic Center. The difference becomes even more compelling if we take into account that metal abundances are based on young stellar tracers (classical Cepheids, Red Supergiants, Luminous Blue Variables). Finally, we briefly outline the possible mechanisms that might account for current empirical evidence.Comment: To be published in the Astrophysics and Space Science Proceeding

Selective photocatalytic conversion of guaiacol using g-C3N4 metal free nanosheets photocatalyst to add-value products

11 pags, 8 figs, 3 tabs. -- Supplementary data to this article can be found online at https://doi.org/10.1016/j.jphotochem.2021.113513.Valorization of lignin into high valuable chemical is a critical challenge. Its availability is a key factor for the development of viable lignocellulosic processes to replace fossil derived compounds. In this work, new insights on the high photocatalytic conversion of guaiacol (82%) as a lignin model compound was achieved, also, high selectivity to p-benzoquinone (59%), catechol (27%), and pyrogallol (6%) was obtained using metal-free pyrolyzed g-C3N4 under visible light irradiation. To highlight the new insights, experimental parameters were modified to control the reaction mechanism to increase selectivity and photo-conversion. g-C3N4 photocatalyst was synthesized through urea calcination at 550 ◦C and the photocatalytic performance was assessed in terms of pyrolysis time, where higher time resulted in better photocatalytic activity. This effect was attributed to smaller structures and therefore better quantum confinement of the charges. The oxidation was promoted by •OH radicals, which were detected through EPR operando mode and the addition of radical scavengers. A reaction pathway was proposed, in which the ⋅OH attacks guaiacol through a methoxy group. The photocatalytic reaction can be tuned using external oxidant agents such as O2 and/or H2O2 to promote certain radical formation, enhancing conversion rates and promoting selectivity for a specific product, where yield shifting from p-benzoquinone to pyrogallol was experimentally observed.The authors thank the funding from ANID Millennium Science Initiative Program NCN17_040, Fondequip EQM150101, EQM160070, Fondecyt proyect No 3210554 and PIA CCTE AFB 170007 projects. To VRI Puente Project No 3913-556-81 and Proyecto Apoyo Investigacion Basica 3913-406-81 at PUC Chile and DICYT-USACH for financial support. To PID2019-107106RB-C32 project funded by the Spanish Ministry of Science and Innovation for financial support. The use of Servicio General de Apoyo a la Investigacion (SAI, University of Zaragoza) is also acknowledged.Peer reviewe

Selective photocatalytic conversion of guaiacol using g-C3N4 metal free nanosheets photocatalyst to add-value products (vol 421, 113513, 2021)

1 pag. -- Refers to: Selective photocatalytic conversion of guaiacol using g-C3N4 metal free nanosheets photocatalyst to add-value products Journal of Photochemistry and Photobiology A: Chemistry, volume 421, 1 December 2021, Pages 113513The authors regret that in the above article, affiliation c is mistaken. Therefore, afiliation c should be: c Departamento de Química de los materiales, Laboratorio de electroquímica Medio ambiental, LEQMA, Universidad de Santiago de Chile, Avenida Libertador Bernardo O'Higgins 3363, Estación Central, Santiago 9170376, Chile The authors would like to apologize for any inconvenience caused.Peer reviewe

The state of the Martian climate

60°N was +2.0°C, relative to the 1981–2010 average value (Fig. 5.1). This marks a new high for the record. The average annual surface air temperature (SAT) anomaly for 2016 for land stations north of starting in 1900, and is a significant increase over the previous highest value of +1.2°C, which was observed in 2007, 2011, and 2015. Average global annual temperatures also showed record values in 2015 and 2016. Currently, the Arctic is warming at more than twice the rate of lower latitudes