HYDROBASE : a database of hydrographic stations and tools for climatological analysis

This report documents the organization, functionality, and algorithms of a software package which operates as a database manager and toolset for climatological analysis of hydrographic station data. It details the methods of quality control used in constrction of the small, but growing, database and discusses some of the improvements HydroBase methods offer over existing gridded databases, including a short comparison to Levitus's World Ocean Atlas 1994 package. A large porton of this technical reference is devoted to describing the software modules and providing examples for their use.Funding was provided by the National Science Foundation through Grant OCE91-03364 and the National Oceanic and Atmospheric Administration through Contract Nos. NA36GP0137 and NA46GP0303

CMIP5 Model Intercomparison of Freshwater Budget and Circulation in the North Atlantic

ABSTRACT The subpolar North Atlantic is a center of variability of ocean properties, wind stress curl, and air–sea exchanges. Observations and hindcast simulations suggest that from the early 1970s to the mid-1990s the subpolar gyre became fresher while the gyre and meridional circulations intensified. This is opposite to the relationship of freshening causing a weakened circulation, most often reproduced by climate models. The authors hypothesize that both these configurations exist but dominate on different time scales: a fresher subpolar gyre when the circulation is more intense, at interannual frequencies (configuration A), and a saltier subpolar gyre when the circulation is more intense, at longer periods (configuration B). Rather than going into the detail of the mechanisms sustaining each configuration, the authors’ objective is to identify which configuration dominates and to test whether this depends on frequency, in preindustrial control runs of five climate models from phase 5 of the Coupled Model Intercomparison Project (CMIP5). To this end, the authors have developed a novel intercomparison method that enables analysis of freshwater budget and circulation changes in a physical perspective that overcomes model specificities. Lag correlations and a cross-spectral analysis between freshwater content changes and circulation indices validate the authors’ hypothesis, as configuration A is only visible at interannual frequencies while configuration B is mostly visible at decadal and longer periods, suggesting that the driving role of salinity on the circulation depends on frequency. Overall, this analysis underscores the large differences among state-of-the-art climate models in their representations of the North Atlantic freshwater budget

Impact of ocean stratification on submarine melting of a major Greenland outlet glacier

Submarine melting is an important balance term for tidewater glaciers1,2 and recent observations point to a change in the submarine melt rate as a potential trigger for the widespread acceleration of outlet glaciers in Greenland3-5. Our understanding of the dynamics involved, and hence our ability to interpret past and predict future variability of the Greenland Ice Sheet, however, is severely impeded by the lack of measurements at the ice/ocean interface. To fill this gap, attempts to quantify the submarine melt rate and its variability have relied on a paradigm developed for tidewater glaciers terminating in fjords with shallow sills. In this case, the fjords’ waters are mostly homogeneous and the heat transport to the terminus, and hence the melt rate, is controlled by a single overturning cell in which glacially modified water upwells at the ice edge, driving an inflow at depth and a fresh outflow at the surface1. Greenland’s fjords, however, have deep sills which allow both cold, fresh Arctic and warm, salty Atlantic waters, circulating around Greenland, to reach the ice sheet margin3,6,7. Thus, Greenland’s glaciers flow into strongly stratified fjords and the generic tidewater glacier paradigm is not applicable. Here, using new summer data collected at the margins of Helheim Glacier, East Greenland, we show that melting is driven by both Atlantic and Arctic waters and that the circulation at the ice edge is organized in multiple, overturning cells that arise from their different properties. Multiple cells with different characteristics are also observed in winter, when glacial run off is at a minimum and there is little surface outflow. These results indicate that stratification in the fjord waters has a profound impact on the melting dynamics and suggest that the shape and stability of Greenland’s glaciers are strongly influenced by layering and variability in the Arctic and Atlantic waters. 

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Using the Sirocco File System for high-bandwidth checkpoints.

The Sirocco File System, a file system for exascale under active development, is designed to allow the storage software to maximize quality of service through increased flexibility and local decision-making. By allowing the storage system to manage a range of storage targets that have varying speeds and capacities, the system can increase the speed and surety of storage to the application. We instrument CTH to use a group of RAM-based Sirocco storage servers allocated within the job as a high-performance storage tier to accept checkpoints, allowing computation to potentially continue asynchronously of checkpoint migration to slower, more permanent storage. The result is a 10-60x speedup in constructing and moving checkpoint data from the compute nodes. This demonstration of early Sirocco functionality shows a significant benefit for a real I/O workload, checkpointing, in a real application, CTH. By running Sirocco storage servers within a job as RAM-only stores, CTH was able to store checkpoints 10-60x faster than storing to PanFS, allowing the job to continue computing sooner. While this prototype did not include automatic data migration, the checkpoint was available to be pushed or pulled to disk-based storage as needed after the compute nodes continued computing. Future developments include the ability to dynamically spawn Sirocco nodes to absorb checkpoints, expanding this mechanism to other fast tiers of storage like flash memory, and sharing of dynamic Sirocco nodes between multiple jobs as needed

Birth prevalence of anorectal malformations in England and 5-year survival: a national birth cohort study

OBJECTIVE: To determine the birth prevalence, maternal risk factors and 5-year survival for isolated and complex anorectal malformations. DESIGN: National birth cohort using hospital admission data and death records. SETTING: All National Health Service England hospitals. PATIENTS: Live-born singletons delivered from 2002 through 2018, with evidence in the first year of life of a diagnosis of an anorectal malformation and repair during a hospital admission, or anorectal malformation recorded on the death certificate. Cases were further classified as isolated or complex depending on the presence of additional anomalies. MAIN OUTCOME MEASURES: Birth prevalence of anorectal malformations per 10 000 live births, risk ratios for isolated and complex anorectal malformation by maternal, infant and birth characteristics, and 5-year survival. RESULTS: We identified 3325 infants with anorectal malformations among 9 474 147 live-born singletons; 61.7% (n=2050) of cases were complex. Birth prevalence was 3.5 per 10 000 live births (95% CI 3.4 to 3.6). Complex anorectal malformations were associated with maternal age extremes after accounting for other sociodemographic factors. Compared with maternal ages 25-34 years, the risk of complex anorectal malformations was 31% higher for ≥35 years (95% CI 17 to 48) and 13% higher for ≤24 years (95% CI 0 to 27). Among 2376 anorectal malformation cases (n=1450 complex) born from 2002 through 2014, 5-year survival was lower for complex (86.9%; 95% CI 85.1% to 88.5%) than isolated anorectal malformations (98.2%; 95% CI 97.1% to 98.9%). Preterm infants with complex anorectal malformations had the lowest survival (73.4%; 95% CI 68.1% to 78.0%). CONCLUSIONS: Differences in maternal risk factors for isolated and complex anorectal malformations may reflect different underlying mechanisms for occurrence. Five-year survival is high but lowest for preterm children with complex anorectal malformations

Time series measurements of transient tracers and tracer-derived transport in the Deep Western Boundary Current between the Labrador Sea and the subtropical Atlantic Ocean at Line W

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016): 8115–8138, doi:10.1002/2016JC011759.Time series measurements of the nuclear fuel reprocessing tracer 129I and the gas ventilation tracer CFC-11 were undertaken on the AR7W section in the Labrador Sea (1997–2014) and on Line W (2004–2014), located over the US continental slope off Cape Cod, to determine advection and mixing time scales for the transport of Denmark Strait Overflow Water (DSOW) within the Deep Western Boundary Current (DWBC). Tracer measurements were also conducted in 2010 over the continental rise southeast of Bermuda to intercept the equatorward flow of DSOW by interior pathways. The Labrador Sea tracer and hydrographic time series data were used as input functions in a boundary current model that employs transit time distributions to simulate the effects of mixing and advection on downstream tracer distributions. Model simulations of tracer levels in the boundary current core and adjacent interior (shoulder) region with which mixing occurs were compared with the Line W time series measurements to determine boundary current model parameters. These results indicate that DSOW is transported from the Labrador Sea to Line W via the DWBC on a time scale of 5–6 years corresponding to a mean flow velocity of 2.7 cm/s while mixing between the core and interior regions occurs with a time constant of 2.6 years. A tracer section over the southern flank of the Bermuda rise indicates that the flow of DSOW that separated from the DWBC had undergone transport through interior pathways on a time scale of 9 years with a mixing time constant of 4 years.US NSF supported this work. Grant Numbers: OCE-0241354, OCE-0726720, OCE-0926848, OCE13-328342017-05-1

‘It’s like equality now; it’s not as if it’s the old days’: an investigation into gender identity development and football participation of adolescent girls

This article explores the influence participating in football has on the development of adolescent girls’ gender identity, an area which currently lacks academic attention. Data were taken from an ethnographic study with a group of adolescent girls and boys and compared to Jeanes’ research. A social constructionist framework was deployed with links to both critical theory and feminist literature. Qualitative and participatory methods were used to fully engage with the complex issue of gender identity. The girls within this study were aware of the normative gender expectations linked to ‘being a female’ but did not find this restrictive. The girls moved between many changing identities and organised their ‘web of selves’ accordingly. The apparent need to measure success by the parameters of male standards created a barrier to girls’ identity development

Trajectory shifts in the Arctic and Subarctic freshwater cycle

Author Posting. © The Author(s), 2006. This is the author's version of the work. It is posted here by permission of American Association for the Advancement of Science for personal use, not for redistribution. The definitive version was published in Science 313 (2006): 1061-1066, doi:10.1126/science.1122593.Manifold changes in the freshwater cycle of high-latitude lands and oceans have been reported in the past few years. A synthesis of these changes in sources of freshwater and in ocean freshwater storage illustrates the complementary and synoptic temporal pattern and magnitude of these changes over the past 50 years. Increasing river discharge anomalies and excess net precipitation on the ocean contributed ~20,000 km3 of fresh water to the Arctic and high latitude North Atlantic oceans from lows in the 1960s to highs in the 1990s. Sea ice attrition provided another ~15,000 km3, and glacial melt added ~2000 km3. The sum of anomalous inputs from these freshwater sources matched the amount and rate at which fresh water accumulated in the North Atlantic during much of the period from 1965 through 1995. The changes in freshwater inputs and ocean storage occurred in conjunction with the amplifying North Atlantic Oscillation and rising air temperatures. Fresh water may now be accumulating in the Arctic Ocean and will likely be exported southward if and when the North Atlantic Oscillation enters into a new high phase.Funding was provided by NSF (grants OPP-0229302, OPP- 0436118, OPP-0327664, OPP-0352754, OPP-0519840, OCE- 0326778), ONR (grant N00014-02-1-0305) and NASA (grant IDS-03-0000-0145)