Renormalisation group determination of the order of the DNA denaturation transition

We report on the nature of the thermal denaturation transition of homogeneous DNA as determined from a renormalisation group analysis of the Peyrard-Bishop-Dauxois model. Our approach is based on an analogy with the phenomenon of critical wetting that goes further than previous qualitative comparisons, and shows that the transition is continuous for the average base-pair separation. However, since the range of universal critical behaviour appears to be very narrow, numerically observed denaturation transitions may look first-order, as it has been reported in the literature.Comment: 6 pages; no figures; to appear in Europhysics Letter

Tricritical wedge filling transitions with short-ranged forces

We show that the 3D wedge filling transition in the presence of short-ranged interactions can be first-order or second order depending on the strength of the line tension associated with to the wedge bottom. This fact implies the existence of a tricritical point characterized by a short-distance expansion which differs from the usual continuous filling transition. Our analysis is based on an effective one-dimensional model for the 3D wedge filling which arises from the identification of the breather modes as the only relevant interfacial fluctuations. From such analysis we find a correspondence between continuous 3D filling at bulk coexistence and 2D wetting transitions with random-bond disorder.Comment: 7 pages, 3 figures, 6th Liquid Matter Conference Proceedings (to be published in J. Phys.: Condens. Matter

Modeling the thermal evolution of enzyme-created bubbles in DNA

The formation of bubbles in nucleic acids (NAs) are fundamental in many biological processes such as DNA replication, recombination, telomeres formation, nucleotide excision repair, as well as RNA transcription and splicing. These precesses are carried out by assembled complexes with enzymes that separate selected regions of NAs. Within the frame of a nonlinear dynamics approach we model the structure of the DNA duplex by a nonlinear network of coupled oscillators. We show that in fact from certain local structural distortions there originate oscillating localized patterns, that is radial and torsional breathers, which are associated with localized H-bond deformations, being reminiscent of the replication bubble. We further study the temperature dependence of these oscillating bubbles. To this aim the underlying nonlinear oscillator network of the DNA duplex is brought in contact with a heat bath using the Nos$\rm{\acute{e}}$-Hoover-method. Special attention is paid to the stability of the oscillating bubbles under the imposed thermal perturbations. It is demonstrated that the radial and torsional breathers, sustain the impact of thermal perturbations even at temperatures as high as room temperature. Generally, for nonzero temperature the H-bond breathers move coherently along the double chain whereas at T=0 standing radial and torsional breathers result.Comment: 19 pages, 7 figure

Hiding Ignorance Using High Dimensions

The absence of information -- entirely or partly -- is called ignorance. Naturally, one might ask if some ignorance of a whole system will imply some ignorance of its parts. Our classical intuition tells us yes, however quantum theory tells us no: it is possible to encode information in a quantum system so that despite some ignorance of the whole, it is impossible to identify the unknown part arXiv:1011.6448. Experimentally verifying this counter-intuitive fact requires controlling and measuring quantum systems of high dimension $(d {>} 9)$. We provide this experimental evidence using the transverse spatial modes of light, a powerful resource for testing high dimensional quantum phenomenon

Age-related changes in blood-brain barrier integrity in C57BL/6J mice

The blood-brain barrier (BBB) is formed by the endothelial cells of the brain microvasculature, which control the molecular traffic between the blood and brain to maintain the neural microenvironment