A continuum-tree-valued Markov process

We present a construction of a L\'evy continuum random tree (CRT) associated with a super-critical continuous state branching process using the so-called exploration process and a Girsanov's theorem. We also extend the pruning procedure to this super-critical case. Let $\psi$ be a critical branching mechanism. We set $\psi_\theta(\cdot)=\psi(\cdot+\theta)-\psi(\theta)$. Let $\Theta=(\theta_\infty,+\infty)$ or $\Theta=[\theta_\infty,+\infty)$ be the set of values of $\theta$ for which $\psi_\theta$ is a branching mechanism. The pruning procedure allows to construct a decreasing L\'evy-CRT-valued Markov process (\ct_\theta,\theta\in\Theta), such that $\mathcal{T}_\theta$ has branching mechanism $\psi_\theta$. It is sub-critical if $\theta>0$ and super-critical if $\theta<0$. We then consider the explosion time $A$ of the CRT: the smaller (negative) time $\theta$ for which $\mathcal{T}_\theta$ has finite mass. We describe the law of $A$ as well as the distribution of the CRT just after this explosion time. The CRT just after explosion can be seen as a CRT conditioned not to be extinct which is pruned with an independent intensity related to $A$. We also study the evolution of the CRT-valued process after the explosion time. This extends results from Aldous and Pitman on Galton-Watson trees. For the particular case of the quadratic branching mechanism, we show that after explosion the total mass of the CRT behaves like the inverse of a stable subordinator with index 1/2. This result is related to the size of the tagged fragment for the fragmentation of Aldous' CRT

The EGIM, modular though generic addresses the requirements of the EMSO platforms

The EGIM (EMSO Generic Instrument Module ) is designed to consistently and continuously measure parameters of interest for most major science areas covered by EMSO. This research infrastructure provides accurate records on marine environmental changes from distributed regional nodes around Europe. The system can deliver data that can support the Global Ocean Observing System –Essential Ocean Variables concept, as well as the Marine Strategy Framework Directive towards evaluating environmentalstatus. The EGIM is flexible for adaptation according to site and disciplinespecific requirements. Inter - operability and capacity of future evolution of the system are key aspects of the modularity. The EGIM is able to operate on any EMSO node type: mooring line, sea bed station, cabled or non - cabled and surface buoy to monitor environmental parameters over a wide depth range. Operating modes, power requirements, mechanical design can adapt to the various EMSO node configurations. In addition to sensors already included in the EGIM prototype (temperature, conductivity, pressure, dissolved Oxygen, Turbidity, currents and passive acoustics) the EGIMcan host up to five additional sensors such as chl -a, pCO 2, pH, seismic and photographic/video images ornew sensors. The EGIM provides all the sensor hosting services required ,for instance power distribution, positioning , and protection against bio -fouling . Within EMSO , the EGIM aimsto have a number of ocean locations where the same set of core variables are measured homogeneously: using the same hardware, same sensor references, same qualification methods, same calibration methods, same data format and access and the same maintenance procedures. It’s compact and modular nature allows for flexible deploymentscenarios that include being able to accommodate new instruments such for Essential Ocean Variables and other needs as theirtechnology readiness levels improve.Peer ReviewedPostprint (published version

Benchmark, les réseaux sociaux en bibliothèque de lecture publique - 2014

Assurer une présence sur les réseaux sociaux est aujourd’hui incontournable pour les bibliothèques d’une certaine taille. Cette démarche permet de toucher un public étendu, d’assurer une médiation vers ses ressources et celles de ses partenaires, de développer la participation des usagers, et de montrer la connexion entre l’établissement et son quartier. La bibliothèque Canopée souhaite assurer une forte présence sur les réseaux sociaux. Il en est de même pour la bibliothèque en préfiguration Saint-Lazare. Cette étude à un instant T doit servir de base pour déterminer quelles sont les plateformes sociales les plus intéressantes dans une bibliothèque de lecture publique. Les fonctionnalités, l’attrait de certains réseaux évoluant à la hausse ou à la baisse entraînera une réévaluation possible de ce benchmark. Après une première édition en juin 2013, cette nouvelle mouture intègre de nouvelles plateformes (Flipboard, Issuu, Snapchat, Flipagram, Libfly) et met à jour l’évaluation des critères pour les autres

The EGIM, EMSO generic instrument module, step towards standardization

Peer ReviewedPostprint (published version

An integrative investigation of sensory organ development and orientation behavior throughout the larval phase of a coral reef fish

The dispersal of marine larvae determines the level of connectivity among populations, influences population dynamics, and affects evolutionary processes. Patterns of dispersal are influenced by both ocean currents and larval behavior, yet the role of behavior remains poorly understood. Here we report the first integrated study of the ontogeny of multiple sensory systems and orientation behavior throughout the larval phase of a coral reef fish—the neon goby, Elacatinus lori. We document the developmental morphology of all major sensory organs (lateral line, visual, auditory, olfactory, gustatory) together with the development of larval swimming and orientation behaviors observed in a circular arena set adrift at sea. We show that all sensory organs are present at hatch and increase in size (or number) and complexity throughout the larval phase. Further, we demonstrate that most larvae can orient as early as 2 days post-hatch, and they swim faster and straighter as they develop. We conclude that sensory organs and swimming abilities are sufficiently developed to allow E. lori larvae to orient soon after hatch, suggesting that early orientation behavior may be common among coral reef fishes. Finally, we provide a framework for testing alternative hypotheses for the orientation strategies used by fish larvae, laying a foundation for a deeper understanding of the role of behavior in shaping dispersal patterns in the sea

Recombinant pediocin in Lactococcus lactis:increased production by propeptide fusion and improved potency by co-production with PedC

We describe the impact of two propeptides and PedC on the production yield and the potency of recombinant pediocins produced in Lactococcus lactis. On the one hand, the sequences encoding the propeptides SD or LEISSTCDA were inserted between the sequence encoding the signal peptide of Usp45 and the structural gene of the mature pediocin PA-1. On the other hand, the putative thiol-disulfide oxidoreductase PedC was coexpressed with pediocin. The concentration of recombinant pediocins produced in supernatants was determined by enzyme-linked immunosorbent assay. The potency of recombinant pediocins was investigated by measuring the minimal inhibitory concentration by agar well diffusion assay. The results show that propeptides SD or LEISSTCDA lead to an improved secretion of recombinant pediocins with apparently no effect on the antibacterial potency and that PedC increases the potency of recombinant pediocin. To our knowledge, this study reveals for the first time that pediocin tolerates fusions at the N-terminal end. Furthermore, it reveals that only expressing the pediocin structural gene in a heterologous host is not sufficient to get an optimal potency and requires the accessory protein PedC. In addition, it can be speculated that PedC catalyses the correct formation of disulfide bonds in pediocin.</p

The EMSO Generic Instrument Module (EGIM): standardized and interoperable instrumentation for ocean observation

The oceans are a fundamental source for climate balance, sustainability of resources and life on Earth, therefore society has a strong and pressing interest in maintaining and, where possible, restoring the health of the marine ecosystems. Effective, integrated ocean observation is key to suggesting actions to reduce anthropogenic impact from coastal to deep-sea environments and address the main challenges of the 21st century, which are summarized in the UN Sustainable Development Goals and Blue Growth strategies. The European Multidisciplinary Seafloor and water column Observatory (EMSO), is a European Research Infrastructure Consortium (ERIC), with the aim of providing long-term observations via fixed-point ocean observatories in key environmental locations across European seas from the Arctic to the Black Sea. These may be supported by ship-based observations and autonomous systems such as gliders. In this paper, we present the EMSO Generic Instrument Module (EGIM), a deployment ready multi-sensor instrumentation module, designed to measure physical, biogeochemical, biological and ecosystem variables consistently, in a range of marine environments, over long periods of time. Here, we describe the system, features, configuration, operation and data management. We demonstrate, through a series of coastal and oceanic pilot experiments that the EGIM is a valuable standard ocean observation module, which can significantly improve the capacity of existing ocean observatories and provides the basis for new observatories. The diverse examples of use included the monitoring of fish activity response upon oceanographic variability, hydrothermal vent fluids and particle dispersion, passive acoustic monitoring of marine mammals and time series of environmental variation in the water column. With the EGIM available to all the EMSO Regional Facilities, EMSO will be reaching a milestone in standardization and interoperability, marking a key capability advancement in addressing issues of sustainability in resource and habitat management of the oceans.This work was funded by the project EMSODEV (Grant agreement No 676555) supported by DG Research and Innovation of the European Commission under the Research Infrastructures Programme of the H2020. EMSO-link EC project (Grant agreement No 731036) provided additional funding. Other projects which supported the work include Plan Estatal de Investigación Científica y Técnica y de Innovación 2017–2020, project BITER-LANDER PID2020- 114732RB-C32, iFADO (Innovation in the Framework of the Atlantic Deep Ocean, 2017–2021) EAPA_165/2016. The Spanish Government contributed through the “Severo Ochoa Centre Excellence” accreditation to ICM-CSIC (CEX2019-000928-S) and the Research Unit Tecnoterra (ICM-CSIC/UPC). UK colleagues were supported by Climate Linked Atlantic Sector Science (CLASS) project supported by NERC National Capability funding (NE/R015953/1).Peer ReviewedArticle signat per 33 autors/es: Nadine Lantéri; Henry A. Ruh; Andrew Gates; Enoc Martínez; Joaquin del Rio Fernandez; Jacopo Aguzzi; Mathilde Cannat; Eric Delory; Davide Embriaco; Robert Huber; Marjolaine Matabos;George Petihakis; Kieran Reilly; Jean-François Rolin; Mike van der Schaar; Michel André; Jérôme Blandin; Andrés Cianca; Marco Francescangeli; Oscar Garcia; Susan Hartman; Jean-Romain Lagadec; Julien Legrand; Paris Pagonis; Jaume Piera; Xabier Remirez; Daniel M. Toma; Giuditta Marinaro; Bertrand Moreau; Raul Santana; Hannah Wright; Juan José Dañobeitia; Paolo FavaliPostprint (published version

Agglutination of benthic foraminifera in relation to mesoscale bathymetric features in the abyssal NE Atlantic (Porcupine Abyssal Plain)

Abyssal hills, small topographic features rising above the abyssal seafloor (< 1000 m altitude), have distinct environmental characteristics compared to abyssal plains, notably the presence of coarser-grained sediments. As a result, they are a major source of habitat heterogeneity in the deep sea. The aim of this study was to investigate whether there is a link between abyssal hills and the test characteristics of selected agglutinated benthic foraminiferal species. We analysed 1) the overall morphometry, and 2) the granulometric and chemical (elemental) characteristics of the agglutinated tests of ten common foraminiferal species (Adercotryma glomerata, Ammobaculites agglutinans, Cribrostomoides subglobosus, Lagenammina sp.1, Nodulina dentaliniformis, Portatrochammina murrayi, three Reophax sp. and Recurvoides sp. 9) at four sites (two on top of abyssal hills and two on the adjacent plain) in the area of the Porcupine Abyssal Plain Sustained Observatory, northeast Atlantic. The foraminiferal test data were compared with the particle size distribution and elemental composition of sediments from the study sites in order to explore possible grain size and mineral selectivity. We found differences in the visual appearance of the tests (i.e. the degree of irregularity in their shape), which was confirmed by morphometric analyses, related to seafloor topography. The agglutinated foraminifera selected different sized particles on hills and plains, reflecting the distinct granulometric characteristics of these settings. These characteristics (incorporation of coarse particles, test morphometry) could provide evidence for the recognition of ancient abyssal hill environments, as well as other palaeoceanographic settings that were characterised by enhanced current flow. Furthermore, analyses of sediment samples from the hill and plain sites using wavelength dispersive X-ray fluorescence (WD-XRF) yielded different elemental profiles from the plains, probably a result of winnowing on the hills, although all samples were carbonate-rich. In contrast, the majority of the agglutinated tests were rich in silica, suggesting a preferential selection for quartz