Catalysis and chemical mechanisms of calcite dissolution in seawater

Near-equilibrium calcite dissolution in seawater contributes significantly to the regulation of atmospheric CO_2 on 1,000-y timescales. Despite many studies on far-from-equilibrium dissolution, little is known about the detailed mechanisms responsible for calcite dissolution in seawater. In this paper, we dissolve ^(13)C-labeled calcites in natural seawater. We show that the time-evolving enrichment of δ^(13)C in solution is a direct measure of both dissolution and precipitation reactions across a large range of saturation states. Secondary Ion Mass Spectrometer profiles into the ^(13)C-labeled solids confirm the presence of precipitated material even in undersaturated conditions. The close balance of precipitation and dissolution near equilibrium can alter the chemical composition of calcite deeper than one monolayer into the crystal. This balance of dissolution–precipitation shifts significantly toward a dissolution-dominated mechanism below about Ω= 0.7. Finally, we show that the enzyme carbonic anhydrase (CA) increases the dissolution rate across all saturation states, and the effect is most pronounced close to equilibrium. This finding suggests that the rate of hydration of CO_2 is a rate-limiting step for calcite dissolution in seawater. We then interpret our dissolution data in a framework that incorporates both solution chemistry and geometric constraints on the calcite solid. Near equilibrium, this framework demonstrates a lowered free energy barrier at the solid–solution interface in the presence of CA. This framework also indicates a significant change in dissolution mechanism at Ω= 0.7, which we interpret as the onset of homogeneous etch pit nucleation

A Kinetic Pressure Effect on Calcite Dissolution in Seawater

This study provides laboratory data of calcite dissolution rate as a function of seawater undersaturation state (1-Ω) under variable pressure. ^(13)C-labeled calcite was dissolved in unlabeled seawater and the evolving δ^(13)C composition of the fluid was monitored over time to evaluate the dissolution rate. Results show that dissolution rates are enhanced by a factor of 2-4 at 700 dbar compared to dissolution at the same Ω under ambient pressure (10 dbar). This dissolution rate enhancement under pressure applies over an Ω range of 0.65 to 1 between 10 dbar and 700 dbar. Above 700 dbar (up to 2500 dbar), dissolution rates become independent of pressure. The observed enhancement is well beyond the uncertainty associated with the thermodynamic properties of calcite under pressure (partial molar volume ΔV), and thus should be interpreted as a kinetic pressure effect on calcite dissolution. Dissolution at ambient pressure and higher pressures yield non-linear dissolution kinetics, the pressure effect does not significantly change the reaction order n in Rate = k(1-Ω^)n, which is shown to vary from 3.1±0.3 to 3.8±0.5 from 10 dbar to 700 dbar over Ω = 0.65 to 0.9. Furthermore, two different dissolution mechanisms are indicated by a discontinuity in the rate-undersaturation relationship, and seen at both ambient and higher pressures. The discontinuity, Ω_(critical) = 0.87±0.05 and 0.90±0.03 at 10 dbar and 1050 dbar respectively, are similar within error. The reaction order, n, at Ω > 0.9 is 0.47±0.27 and 0.46±0.15 at 10 dbar and 700 dbar respectively. This Ω_(critical) is considered to be the threshold between step retreat dissolution and defect-assisted dissolution. The kinetic enhancement of dissolution rate at higher pressures is related to a decrease in the interfacial energy barrier at dissolution sites. The impact of pressure on the calcite dissolution kinetics implies that sinking particles would dissolve at shallower depth than previously thought

A Mechanistic Study of Carbonic Anhydrase Enhanced Calcite Dissolution

Carbonic anhydrase (CA) has been shown to promote calcite dissolution (Liu, 2001, https://doi.org/10.1111/j.1755-6724.2001.tb00531.x; Subhas et al., 2017, https://doi.org/10.1073/pnas.1703604114), and understanding the catalytic mechanism will facilitate our understanding of the oceanic alkalinity cycle. We use atomic force microscopy (AFM) to directly observe calcite dissolution in CA‐bearing solution. CA is found to etch the calcite surface only when in extreme proximity (~1 nm) to the mineral. Subsequently, the CA‐induced etch pits create step edges that serve as active dissolution sites. The possible catalytic mechanism is through the adsorption of CA on the calcite surface, followed by proton transfer from the CA catalytic center to the calcite surface during CO2 hydration. This study shows that the accessibility of CA to particulate inorganic carbon (PIC) in the ocean is critical in properly estimating oceanic CaCO3 and alkalinity cycles

A Mechanistic Study of Carbonic Anhydrase Enhanced Calcite Dissolution

Carbonic anhydrase (CA) has been shown to promote calcite dissolution (Liu, 2001, https://doi.org/10.1111/j.1755-6724.2001.tb00531.x; Subhas et al., 2017, https://doi.org/10.1073/pnas.1703604114), and understanding the catalytic mechanism will facilitate our understanding of the oceanic alkalinity cycle. We use atomic force microscopy (AFM) to directly observe calcite dissolution in CA‐bearing solution. CA is found to etch the calcite surface only when in extreme proximity (~1 nm) to the mineral. Subsequently, the CA‐induced etch pits create step edges that serve as active dissolution sites. The possible catalytic mechanism is through the adsorption of CA on the calcite surface, followed by proton transfer from the CA catalytic center to the calcite surface during CO2 hydration. This study shows that the accessibility of CA to particulate inorganic carbon (PIC) in the ocean is critical in properly estimating oceanic CaCO3 and alkalinity cycles

Meter-Scale Early Diagenesis of Organic Matter Buried Within Deep-Sea Sediments Beneath the Amazon River Plume

Gravity cores and multi-cores were collected from the Demerara Abyssal plain to examine meter-scale downcore features of early diagenesis in the sediments and relate them to the location of the Amazon River plume in the North Atlantic Ocean. At all sites, the oxygen penetration depth, inferred from nitrate and dissolved manganese profiles, was ~10–20 cm and nitrate was depleted within ~50 cm. However, most of the cores also had a secondary nitrate maximum (4–13 μM) at ~50 cm, at a location where we observed changes in gradients of dissolved manganese, iron, and ammonium. Although there is spatial heterogeneity in the profile behavior across the study, we do find subtle diagenetic profile patterns that occur in sediments in relation to their position below the Amazon plume. Dissolved silica profiles show an initial increase downcore, but then all show a decrease to depths of 30–100 cm, thereafter concentrations increase. We suggest this zone of silica uptake is due to reverse weathering processes, possibly involving iron oxidation. A semi-lithified iron crust appeared at nearly all sites, and its position is relict, likely an indicator of the transition from glacial to interglacial sediments

An Atomic Force Microscopy Study of Calcite Dissolution in Seawater

We present the first examination of calcite dissolution in seawater using Atomic Force Microscopy (AFM). We quantify step retreat velocity and etch pit density to compare dissolution in seawater to low ionic strength water, and also to compare calcite dissolution under AFM conditions to those conducted in bulk solution experiments (e.g. Subhas et al., 2015, Dong et al., 2018). Bulk dissolution rates and step retreat velocities are slower at high and mid-saturation state (Ω) values and become comparable to low ionic strength water rates at low Ω. The onset of defect-assisted etch pit formation in seawater is at Ω ∼ 0.85 (defined as Ω_(critical)), higher than in low ionic strength water (Ω ∼ 0.54). There is an abrupt increase in etch pit density (from ∼10⁶ cm⁻² to ∼10⁸ cm⁻²) occurring when Ω falls below 0.7 in seawater, compared to Ω ∼ 0.1 in low ionic strength water, suggesting a transition from defect-assisted dissolution to homogeneous dissolution much closer to equilibrium in seawater. The step retreat velocity (v) does not scale linearly with undersaturation (1-Ω) across an Ω range of 0.4 to 0.9 in seawater, potentially indicating a high order correlation between kink rate and Ω for non-Kossel crystals such as calcite, or surface complexation processes during calcite dissolution in seawater

An Atomic Force Microscopy Study of Calcite Dissolution in Seawater

We present the first examination of calcite dissolution in seawater using Atomic Force Microscopy (AFM). We quantify step retreat velocity and etch pit density to compare dissolution in seawater to low ionic strength water, and also to compare calcite dissolution under AFM conditions to those conducted in bulk solution experiments (e.g. Subhas et al., 2015, Dong et al., 2018). Bulk dissolution rates and step retreat velocities are slower at high and mid-saturation state (Ω) values and become comparable to low ionic strength water rates at low Ω. The onset of defect-assisted etch pit formation in seawater is at Ω ∼ 0.85 (defined as Ω_(critical)), higher than in low ionic strength water (Ω ∼ 0.54). There is an abrupt increase in etch pit density (from ∼10⁶ cm⁻² to ∼10⁸ cm⁻²) occurring when Ω falls below 0.7 in seawater, compared to Ω ∼ 0.1 in low ionic strength water, suggesting a transition from defect-assisted dissolution to homogeneous dissolution much closer to equilibrium in seawater. The step retreat velocity (v) does not scale linearly with undersaturation (1-Ω) across an Ω range of 0.4 to 0.9 in seawater, potentially indicating a high order correlation between kink rate and Ω for non-Kossel crystals such as calcite, or surface complexation processes during calcite dissolution in seawater

Temperature Dependence of Calcite Dissolution Kinetics in Seawater

Knowledge of calcite dissolution kinetics in seawater is a critical component of our understanding of the changing global carbon budget. Towards this goal, we provide the first measurements of the temperature dependence of calcite dissolution kinetics in seawater. We measured the dissolution rates of ^(13)C-labeled calcite in seawater at 5, 12, 21, and 37°C across the full range of saturation states (0 < Ω = Ca^(2+)[CO_3^(2-)/Ksp'< 1). We show that the dissolution rate is non-linearly dependent on Ω and that the degree of non-linearity both increases with temperature, and changes abruptly at “critical” saturation states (Ω_(crit_). The traditional exponential rate law most often utilized in the oceanographic community, R=k(1-Ω)^n, requires different fits to k and n depending upon the degree of undersaturation. Though we calculate a similar activation energy to other studies far from equilibrium (25±2 kJ/mol), the exponential rate law could not be used to mechanistically explain our near equilibrium results. We turn to an alternative framework, derived from crystal nucleation theory, and find that our results are consistent with calcite dissolution kinetics in seawater being set by the retreat of pre-existing edges/steps from Ω=1-0.9, defect-assisted etch pit formation from Ω=0.9-0.75, and finally homogenous etch pit formation from Ω=0.75-0. The Ω_(crit) s for each mechanism are shifted significantly closer to equilibrium than they occur in dilute solutions, such that ocean acidification may cause marine carbonates to enter faster dissolution regimes more readily than would be expected from previous studies. We use the observed temperature dependence for each dissolution mechanism to calculate step kinetic coefficients (β, cm/s), densities of active nucleation sites (n_s, sites/m^2), and step edge free energies (α, mJ/m^2). Homogenous dissolution is well explained within the surface nucleation framework, but defect-assisted dissolution is not. Dissolution is initiated via step-propagation at all temperatures, but the defect-assisted mechanism is skipped over at 5°C, potentially due to a lack of nucleation sites. The surface nucleation framework enhances our understanding of calcite dissolution in seawater, but our results suggest that a complete theory will also need to incorporate the role of solution/surface speciation and complexation

A Kinetic Pressure Effect on Calcite Dissolution in Seawater

This study provides laboratory data of calcite dissolution rate as a function of seawater undersaturation state (1-Ω) under variable pressure. ^(13)C-labeled calcite was dissolved in unlabeled seawater and the evolving δ^(13)C composition of the fluid was monitored over time to evaluate the dissolution rate. Results show that dissolution rates are enhanced by a factor of 2-4 at 700 dbar compared to dissolution at the same Ω under ambient pressure (10 dbar). This dissolution rate enhancement under pressure applies over an Ω range of 0.65 to 1 between 10 dbar and 700 dbar. Above 700 dbar (up to 2500 dbar), dissolution rates become independent of pressure. The observed enhancement is well beyond the uncertainty associated with the thermodynamic properties of calcite under pressure (partial molar volume ΔV), and thus should be interpreted as a kinetic pressure effect on calcite dissolution. Dissolution at ambient pressure and higher pressures yield non-linear dissolution kinetics, the pressure effect does not significantly change the reaction order n in Rate = k(1-Ω^)n, which is shown to vary from 3.1±0.3 to 3.8±0.5 from 10 dbar to 700 dbar over Ω = 0.65 to 0.9. Furthermore, two different dissolution mechanisms are indicated by a discontinuity in the rate-undersaturation relationship, and seen at both ambient and higher pressures. The discontinuity, Ω_(critical) = 0.87±0.05 and 0.90±0.03 at 10 dbar and 1050 dbar respectively, are similar within error. The reaction order, n, at Ω > 0.9 is 0.47±0.27 and 0.46±0.15 at 10 dbar and 700 dbar respectively. This Ω_(critical) is considered to be the threshold between step retreat dissolution and defect-assisted dissolution. The kinetic enhancement of dissolution rate at higher pressures is related to a decrease in the interfacial energy barrier at dissolution sites. The impact of pressure on the calcite dissolution kinetics implies that sinking particles would dissolve at shallower depth than previously thought