Evaluation of the uranium double spike technique for environmental monitoring

Use of a uranium double spike in analysis of environmental samples showed that a {sup 235}U enrichment of 1% ({sup 235}U/{sup 238}U = 0.00732) can be distinguished from natural ({sup 235}U/{sup 238}U = 0.00725). Experiments performed jointly at Los Alamos National Laboratory (LANL) and Oak Ridge National Laboratory (ORNL) used a carefully calibrated double spike of {sup 233}U and {sup 236}U to obtain much better precision than is possible using conventional analytical techniques. A variety of different sampling media (vegetation and swipes) showed that, provided sufficient care is exercised in choice of sample type, relative standard deviations of less than {+-} 0.5% can be routinely obtained. This ability, unavailable without use of the double spike, has enormous potential significance in the detection of undeclared nuclear facilities

When simple sequence comparison fails: the cryptic case of the shared domains of the bacterial replication initiation proteins DnaB and DnaD

DnaD and DnaB are essential DNA-replication-initiation proteins in low-G+C content Gram-positive bacteria. Here we use sensitive Hidden Markov Model-based techniques to show that the DnaB and DnaD proteins share a common structure that is evident across all their structural domains, termed DDBH1 and DDBH2 (DnaD DnaB Homology 1 and 2). Despite strong sequence divergence, many of the DNA-binding and oligomerization properties of these domains have been conserved. Although eluding simple sequence comparisons, the DDBH2 domains share the only strong sequence motif; an extremely highly conserved YxxxIxxxW sequence that contributes to DNA binding. Sequence alignments of DnaD alone fail to identify another key part of the DNA-binding module, since it includes a poorly conserved sequence, a solvent-exposed and somewhat unstable helix and a mobile segment. We show by NMR, in vitro mutagenesis and in vivo complementation experiments that the DNA-binding module of Bacillus subtilis DnaD comprises the YxxxIxxxW motif, the unstable helix and a portion of the mobile region, the latter two being essential for viability. These structural insights lead us to a re-evaluation of the oligomerization and DNA-binding properties of the DnaD and DnaB proteins

Molybdenum solar neutrino experiment

The goal of the molybdenum solar neutrino experiment is to deduce the /sup 8/B solar neutrino flux, averaged over the past several million years, from the concentration of /sup 98/Tc in a deeply buried molybdenum deposit. The experiment is important to an understanding of stellar processes because it will shed light on the reason for the discrepancy between theory and observation of the chlorine solar neutrino experiment. Possible reasons for the discrepancy may lie in the properties of neutrinos (neutrino oscillations or massive neutrinos) or in deficiencies of the standard solar model. The chlorine experiment only measures the /sup 8/B neutrino flux in current times and does not address possible temporal variations in the interior of the sun, which are also not considered in the standard model. In the molybdenum experiment, we plan to measure /sup 98/Tc (4.2 Myr), also produced by /sup 8/B neutrinos, and possibly /sup 97/Tc (2.6 Myr), produced by lower energy neutrinos

Co-directional replication-transcription conflicts lead to replication restart

August 24, 2011Head-on encounters between the replication and transcription machineries on the lagging DNA strand can lead to replication fork arrest and genomic instability1, 2. To avoid head-on encounters, most genes, especially essential and highly transcribed genes, are encoded on the leading strand such that transcription and replication are co-directional. Virtually all bacteria have the highly expressed ribosomal RNA genes co-directional with replication3. In bacteria, co-directional encounters seem inevitable because the rate of replication is about 10–20-fold greater than the rate of transcription. However, these encounters are generally thought to be benign2, 4, 5, 6, 7, 8, 9. Biochemical analyses indicate that head-on encounters10 are more deleterious than co-directional encounters8 and that in both situations, replication resumes without the need for any auxiliary restart proteins, at least in vitro. Here we show that in vivo, co-directional transcription can disrupt replication, leading to the involvement of replication restart proteins. We found that highly transcribed rRNA genes are hotspots for co-directional conflicts between replication and transcription in rapidly growing Bacillus subtilis cells. We observed a transcription-dependent increase in association of the replicative helicase and replication restart proteins where head-on and co-directional conflicts occur. Our results indicate that there are co-directional conflicts between replication and transcription in vivo. Furthermore, in contrast to the findings in vitro, the replication restart machinery is involved in vivo in resolving potentially deleterious encounters due to head-on and co-directional conflicts. These conflicts probably occur in many organisms and at many chromosomal locations and help to explain the presence of important auxiliary proteins involved in replication restart and in helping to clear a path along the DNA for the replisome.Biotechnology and Biological Sciences Research Council (Great Britain) (Grant BB/E006450/1)Wellcome Trust (London, England) (Grant 091968/Z/10/Z)National Institutes of Health (U.S.) (Grant GM41934)National Institutes of Health (U.S.) (Postdoctoral Fellowship GM093408)Biotechnology and Biological Sciences Research Council (Great Britain) (Sabbatical Visit

Abyssal fauna of the UK-1 polymetallic nodule exploration area, Clarion-Clipperton Zone, central Pacific Ocean: Mollusca

The file attached is the Published/publisher’s pdf version of the article. This is an OpenAccess article.Copyright Helena Wiklund et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Isotopic signatures by bulk analyses

Los Alamos National Laboratory has developed a series of measurement techniques for identification of nuclear signatures by analyzing bulk samples. Two specific applications for isotopic fingerprinting to identify the origin of anthropogenic radioactivity in bulk samples are presented. The first example is the analyses of environmental samples collected in the US Arctic to determine the impact of dumping of radionuclides in this polar region. Analyses of sediment and biota samples indicate that for the areas sampled the anthropogenic radionuclide content of sediments was predominantly the result of the deposition of global fallout. The anthropogenic radionuclide concentrations in fish, birds and mammals were very low. It can be surmised that marine food chains are presently not significantly affected. The second example is isotopic fingerprinting of water and sediment samples from the Rocky Flats Facility (RFP). The largest source of anthropogenic radioactivity presently affecting surface-waters at RFP is the sediments that are currently residing in the holding ponds. One gram of sediment from a holding pond contains approximately 50 times more plutonium than 1 liter of water from the pond. Essentially 100% of the uranium in Ponds A-1 and A-2 originated as depleted uranium. The largest source of radioactivity in the terminal Ponds A-4, B-5 and C-2 was naturally occurring uranium and its decay product radium. The uranium concentrations in the waters collected from the terminal ponds contained 0.05% or less of the interim standard calculated derived concentration guide for uranium in waters available to the public. All of the radioactivity observed in soil, sediment and water samples collected at RFP was naturally occurring, the result of processes at RFP or the result of global fallout. No extraneous anthropogenic alpha, beta or gamma activities were detected. The plutonium concentrations in Pond C-2 appear to vary seasonally

Evaluation of the anthropogenic radionuclide concentrations in sediments and fauna collected in the Beaufort Sea and northern Alaska

This study was performed to establish a quality controlled data set about the levels of radio nuclide activity in the environment and in selected biota in the U.S. Arctic. Sediment and biota samples were collected by the National Oceanic and Atmospheric Administration (NOAA), the National Biological Service, and the North Slope Borough`s Department of Wildlife Management to determine the impact of anthropogenic radionuclides in the Arctic. The results summarized in this report are derived from samples collected in northwest Alaska with emphasis on species harvested for subsistence in Barrow, Alaska. Samples were analyzed for the anthropogenic radionuclides {sup 90}Sr, {sup 137}Cs, {sup 238}Pu, {sup 239}Pu, {sup 240}Pu and {sup 241}Am. The naturally occurring radionuclides {sup 40}K, {sup 212}Pb and {sup 214}Pb were also measured. One goal of this study was to determine the amounts of anthropogenic radionuclides present in the Beaufort Sea. Sediment samples were isotopically fingerprinted to determine the sources of radio nuclide activities. Biota samples of subsistence and ecological value were analyzed to search for evidence of bio-accumulation of radionuclides and to determine the radiation exposures associated with subsistence living in northern Alaska. The anthropogenic radio nuclide content of sediments collected in the Beaufort Sea was predominantly the result of the deposition of global fallout. No other sources of anthropogenic radionuclides could be conclusively identified in the sediments. The anthropogenic radio nuclide concentrations in fish, birds and mammals were very low. Assuming that ingestion of food is an important pathway leading to human contact with radioactive contaminants and given the dietary patterns in coastal Arctic communities, it can be surmised that marine food chains are presently not significantly affected

Laboratory and field studies related to the hydrologic resources management program. Progress report, October 1, 1995--September 30, 1996

This report describes the work done at Los Alamos National Laboratory in FY 1996 for the Hydrologic Resources Management Program funded by the US Department of Energy/Nevada Operations Office. Despite declining financial support we have been able to maintain a significant analytical effort because the Underground Test Area Operable Unit at the Nevada Test Site has drilled several wells adjacent to cavities produced by nuclear tests. We measured the radionuclide content in groundwater samples and rock cores taken from near cavities at two sites on Pahute Mesa. At one of these sites we detected plutonium in the groundwater in significant concentrations. Also we detected {sup 137}Cs deposition in soils high in a collapsed chimney above the working point at a location in the Low Level Waste Management facility in Area 3 of the Nevada Test Site. We analyzed samples from four wells suspected or known to contain radionuclides. Sampling efforts in wells completed with small-bore tubing or casing continue to be hampered by our inability to adequately purge the well prior to sampling. We presented our work at a number of meetings and published several review articles

<i>B. subtilis</i> strains used.

1<p>All strains are derived from JH642 and contain <i>trpC pheA</i> mutations.</p

Mutations that suppress the temperature sensitive phenotype caused by <i>dnaDA166T</i> (<i>dnaD23ts</i>).

1<p>All strains are derived from KPL73, and except for the <i>dnaDA166S</i> mutant, all contain the indicated mutation, <i>dnaD23ts</i> (<i>dnaDA166T</i>) and the linked Tn<i>917ΩHU151</i>.</p>2<p>One representative strain is indicated, along with the total number of independent isolates that were sequenced.</p