Fresh perspectives for classic forest restoration challenges

Restoration ecology is a young scientific discipline whose limitations can compromise the recovery of ecosystem biodiversity and functions. Specifically for limitations on forest restoration, we first recommend considering measures prior to land use changes to deal with the common lack of efforts to anticipate and plan restoration. Second, we suggest using multiple references in restoration planning to avoid simplified reference characterization, and we advise assessing ecosystem recovery with indicators that better incorporate ecosystem complexity in recovery assessments. Finally, we propose initiatives to encourage scientific communication outside academia to diminish the communication gap between scientists and practitioners. © 2019 Society for Ecological RestorationA.R.U. was funded by Environmental Fellowship Programme of Tatiana Pérez de Guzmán el Bueno Foundation (2016) and María de Maeztu excellence accreditation (MDM-2017-0714) from the Spanish Government; V.C.A. by REMEDINAL4 (Madrid Government, TE-CM S2018/EMT-4338); Z.R. by the LafargeHolcim, FIRE Foundation, and UAH partnership; and L.M.B. by the FPI Fellowship (BES-2015-075276) from the Spanish Government

Deep convolutional filtering for spatio-temporal denoising and artifact removal in arterial spin labelling MRI

Arterial spin labelling (ASL) is a noninvasive imaging modality, used in the clinic and in research, which can give quantitative measurements of perfusion in the brain and other organs. However, because the signal-to-noise ratio is inherently low and the ASL acquisition is particularly prone to corruption by artifact, image processing methods such as denoising and artifact filtering are vital for generating accurate measurements of perfusion. In this work, we present a new simultaneous approach to denoising and artifact removal, using a novel deep convolutional joint filter architecture to learn and exploit spatio-temporal properties of the ASL signal. We proceed to show, using data from 15 healthy subjects, that our approach achieves state of the art performance in both denoising and artifact removal, improving peak signal-to-noise ratio by up to 50%. By allowing more accurate estimation of perfusion, even in challenging datasets, this technique offers an exciting new approach for ASL pipelines, and might be used both for improving individual images and to increase the power of research studies using ASL

Gender bias in ecosystem restoration: from science to practice

The declaration of the United Nations Decade on Ecosystem Restoration 2020–2030 has established the need to focus on human rights in restoration initiatives, including gender equality. Although this goal raises a need to monitor gender biases on ecosystem restoration, we still lack basic gender information and evaluations on the current situation. The main purpose of this study is to analyze gender bias in ecosystem restoration covering three dimensions: research, outreach, and practice. We used scientific publications from the Restoration Ecology journal, mentions of these articles in Altmetric Explorer and Twitter, and projects from the Society for Ecological Restoration's database. First, we study gender bias among people leading ecosystem restoration initiatives in the three dimensions. Second, we assessed factors that could influence gender bias, including year, target ecosystem, and socioeconomic country development. Third, we analyzed whether the impact of scientific knowledge in society depends on the gender of the scientific team. Our results indicate that men were primary leaders in research, outreach, and practice initiatives in ecosystem restoration. There seems to be a trend over time toward equality in research, but gender inequality is still present in most types of ecosystems, with women leading more projects in more developed countries. The impact of scientific knowledge is independent of the author's gender, but research of male senior authors seems to reach society more easily. This broad perspective of inequality in the three dimensions can evolve toward gender equality, by applying gender approaches in restoration policies and initiatives. © 2022 Society for Ecological Restoration.Raw data is publicly available thanks to Web of Science, Altmetrics, Twitter and SER. Data and scripts used for the analysis are available via Figshare (Cruz‐Alonso et al. 2022 ). Funding: V.C.‐A.—Real Colegio Complutense postdoc fellowship; A.R.‐U.—Spanish State Research Agency through María de Maeztu Excellence Unit accreditation 2018–2022 (MDM‐2017‐0714); L.M.—Swiss National Science Foundation (PCEFP2_181115) and a Margarita Salas Postdoctoral Fellowship from Universidad de Alcalá; L.M.‐B.—Ministerio de Ciencia e Innovación (PID2019‐106806GB‐I00) and a Margarita Salas Postdoctoral Fellowship from Universidad de Alcalá; N.M.—predoctoral grant from Universidad de Alcalá; E.V.‐A.—European Commission (project SHOWCASE, H2020: 862480). We appreciate the support of the FIRE Foundation and the comments of M. Almaraz, M. Pajares, A. S. Moya, and D. Rohrer to improve the manuscript.Raw data is publicly available thanks to Web of Science, Altmetrics, Twitter and SER. Data and scripts used for the analysis are available via Figshare (Cruz‐Alonso et al. 2022 ). Funding: V.C.‐A.—Real Colegio Complutense postdoc fellowship; A.R.‐U.—Spanish State Research Agency through María de Maeztu Excellence Unit accreditation 2018–2022 (MDM‐2017‐0714); L.M.—Swiss National Science Foundation (PCEFP2_181115) and a Margarita Salas Postdoctoral Fellowship from Universidad de Alcalá; L.M.‐B.—Ministerio de Ciencia e Innovación (PID2019‐106806GB‐I00) and a Margarita Salas Postdoctoral Fellowship from Universidad de Alcalá; N.M.—predoctoral grant from Universidad de Alcalá; E.V.‐A.—European Commission (project SHOWCASE, H2020: 862480). We appreciate the support of the FIRE Foundation and the comments of M. Almaraz, M. Pajares, A. S. Moya, and D. Rohrer to improve the manuscript

Two pathologically confirmed cases of novel mutations in the MAPT gene causing frontotemporal dementia

MAPT mutations were the first discovered genetic cause of frontotemporal dementia (FTD) in 1998. Since that time, over 60 MAPT mutations have been identified, usually causing behavioural variant FTD (bvFTD) and/or parkinsonism clinically. We describe two novel MAPT mutations, D252V and G389_I392del, each presenting in a patient with bvFTD and associated language and cognitive deficits. Neuroimaging revealed asymmetrical left greater than right temporal lobe atrophy in the first case, and bifrontal atrophy in the second case. Disease duration was 8 years and 5 years respectively. Post mortem examination in both patients revealed a 3-repeat predominant tauopathy, similar in appearance to Pick's disease. These two mutations add to the literature on genetic FTD, both presenting with similar clinical and imaging features to previously described cases, and pathologically showing a primary tauopathy similar to a number of other MAPT mutations

Community based needs assessment in an urban area; A participatory action research project

<p>Abstract</p> <p>Background</p> <p>Community assessment is a core function of public health. In such assessments, a commitment to community participation and empowerment is at the heart of the WHO European Healthy Cities Network, reflecting its origins in health for all and the Ottawa Charter for Health Promotion. This study employs a participation and empowerment plan in order to conduct community assessment.</p> <p>Methods</p> <p>The method of participatory action research (PAR) was used. The study was carried out in an area of high socio-economic deprivation in Ardabil, a city in the northwest of Iran, which is currently served by a branch of the Social Development Center (SDC). The steering committee of the project was formed by some university faculty members, health officials and delegates form Farhikhteh non-governmental organization and representatives from twelve blocks or districts of the community. Then, the representatives were trained and then conducted focus groups in their block. The focus group findings informed the development of the questionnaire. About six hundred households were surveyed and study questionnaires were completed either during face-to-face interviews by the research team (in case of illiteracy) or via self-completion. The primary question for the residents was: 'what is the most important health problem in your community? Each health problem identified by the community was weighted based on the frequency it was selected on the survey, and steering committee perception of the problem's seriousness, urgency, solvability, and financial load.</p> <p>Results</p> <p>The main problems of the area appeared to be <it>the asphalt problem</it>, <it>lack of easy access to medical centers</it>, <it>addiction among relatives </it>and <it>unemployment of youth</it>. High participation rates of community members in the steering committee and survey suggest that the PAR approach was greatly appreciated by the community and that problems identified through this research truly reflect community opinion.</p> <p>Conclusions</p> <p>Participatory action research is an effective method for community assessments. However, researchers must rigorously embrace principles of mutual cooperation, respect for public ideas, and a robust belief in community empowerment in order to pave the way for responsible and active citizen participation in the various stages of research.</p

Downregulation of exosomal miR-204-5p and miR-632 as a biomarker for FTD: a GENFI study

OBJECTIVE: To determine whether exosomal microRNAs (miRNAs) in cerebrospinal fluid (CSF) of patients with frontotemporal dementia (FTD) can serve as diagnostic biomarkers, we assessed miRNA expression in the Genetic Frontotemporal Dementia Initiative (GENFI) cohort and in sporadic FTD. METHODS: GENFI participants were either carriers of a pathogenic mutation in progranulin, chromosome 9 open reading frame 72 or microtubule-associated protein tau or were at risk of carrying a mutation because a first-degree relative was a known symptomatic mutation carrier. Exosomes were isolated from CSF of 23 presymptomatic and 15 symptomatic mutation carriers and 11 healthy non-mutation carriers. Expression of 752 miRNAs was measured using quantitative PCR (qPCR) arrays and validated by qPCR using individual primers. MiRNAs found differentially expressed in symptomatic compared with presymptomatic mutation carriers were further evaluated in a cohort of 17 patients with sporadic FTD, 13 patients with sporadic Alzheimer's disease (AD) and 10 healthy controls (HCs) of similar age. RESULTS: In the GENFI cohort, miR-204-5p and miR-632 were significantly decreased in symptomatic compared with presymptomatic mutation carriers. Decrease of miR-204-5p and miR-632 revealed receiver operator characteristics with an area of 0.89 (90% CI 0.79 to 0.98) and 0.81 (90% CI 0.68 to 0.93), respectively, and when combined an area of 0.93 (90% CI 0.87 to 0.99). In sporadic FTD, only miR-632 was significantly decreased compared with AD and HCs. Decrease of miR-632 revealed an area of 0.90 (90% CI 0.81 to 0.98). CONCLUSIONS: Exosomal miR-204-5p and miR-632 have potential as diagnostic biomarkers for genetic FTD and miR-632 also for sporadic FTD

Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues

Copyright @ 2012 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and 85 reproduction in any medium, provided the original author and source are credited. The article was made available through the Brunel University Open Access Publishing Fund.BACKGROUND: In interphase nuclei of a wide range of species chromosomes are organised into their own specific locations termed territories. These chromosome territories are non-randomly positioned in nuclei which is believed to be related to a spatial aspect of regulatory control over gene expression. In this study we have adopted the pig as a model in which to study interphase chromosome positioning and follows on from other studies from our group of using pig cells and tissues to study interphase genome re-positioning during differentiation. The pig is an important model organism both economically and as a closely related species to study human disease models. This is why great efforts have been made to accomplish the full genome sequence in the last decade. RESULTS: This study has positioned most of the porcine chromosomes in in vitro cultured adult and embryonic fibroblasts, early passage stromal derived mesenchymal stem cells and lymphocytes. The study is further expanded to position four chromosomes in ex vivo tissue derived from pig kidney, lung and brain. CONCLUSIONS: It was concluded that porcine chromosomes are also non-randomly positioned within interphase nuclei with few major differences in chromosome position in interphase nuclei between different cell and tissue types. There were also no differences between preferred nuclear location of chromosomes in in vitro cultured cells as compared to cells in tissue sections. Using a number of analyses to ascertain by what criteria porcine chromosomes were positioned in interphase nuclei; we found a correlation with DNA content.This study is partly supported by Sygen International PLC

Consequences of epistasis on growth in an erhualian × white duroc pig cross

Epistasis describes an interaction between the effects of loci. We included epistasis in quantitative trait locus (QTL) mapping of growth at a series of ages in a cross of a Chinese pig breed, Erhualian, with a commercial line, White Duroc. Erhualian pigs have much lower growth rates than White Duroc. We improved a method for genomewide testing of epistasis and present a clear analysis workflow. We also suggest a new approach for interpreting epistasis results where significant additive and dominance effects of a locus in specific backgrounds are determined. In total, seventeen QTL were found and eleven showed epistasis. Loci on chromosomes 2, 3, 4 and 7 were highlighted as affecting growth at more than one age or forming an interaction network. Epistasis resulted in both the QTL on chromosomes 3 and 7 having effects in opposite directions. We believe it is the first time for the chromosome 7 locus that an allele from a Chinese breed has been found to decrease growth. The consequences of epistasis were diverse. Results were impacted by using growth rather than body weight as the phenotype and by correcting for an effect of mother. Epistasis made a considerable contribution to growth in this population and modelling epistasis was important for accurately determining QTL effects

Design and Implementation of an Underwater Sound Recording Device

To monitor the underwater sound and pressure waves generated by anthropogenic activities such as underwater blasting and pile driving, an autonomous system was designed to record underwater acoustic signals. The underwater sound recording device (USR) allows for connections of two hydrophones or other dynamic pressure sensors, filters high frequency noise out of the collected signals, has a gain that can be independently set for each sensor, and allows for 2 h of data collection. Two versions of the USR were created: a submersible model deployable to a maximum depth of 300 m, and a watertight but not fully submersible model. Tests were performed on the USR in the laboratory using a data acquisition system to send single-frequency sinusoidal voltages directly to each component. These tests verified that the device operates as designed and performs as well as larger commercially available data acquisition systems, which are not suited for field use. On average, the designed gain values differed from the actual measured gain values by about 0.35 dB. A prototype of the device was used in a case study to measure blast pressures while investigating the effect of underwater rock blasting on juvenile Chinook salmon and rainbow trout. In the case study, maximum positive pressure from the blast was found to be significantly correlated with frequency of injury for individual fish. The case study also demonstrated that the device withstood operation in harsh environments, making it a valuable tool for collecting field measurements