963 research outputs found
On the determination of flow stress using bulge test and mechanical measurement
The standard uniaxial tensile test is a widely accepted method to obtain relevant properties of sheet metal materials. These fundamental parameters can be used in numerical modeling of sheet forming operations to predict and assess formability and failure analysis. However the range of strain obtained from tensile test is limited and therefore if one will need further information on material behavior, extrapolation of tensile data is performed. The bulge test is an alternative to obtain ranges of deformation higher than tensile test, thus being possible to obtain non-extrapolated data for material behavior. Several methods may be used to obtain stress-strain data from bulge test, but a common concept is behind them, which needs the measurement of bulge pressure, curvature of bulge specimen, its thickness at the pole and the application of membrane theory. Concerning such measurements, optical methods are being used recently but classical mechanical methods are still an alternative with its own strengths. This paper presents the use and development of a mechanical measuring system to be incorporated in a hydraulic bulge test for flow curve determination, which permits real-time data acquisition under controlled strain rates up to high levels of plastic deformation. Numerical simulations of bulge test using FEM are performed and a sensitivity analysis is done for some influencing variables used in measurements, thus giving some directions in the design and use of the experimental mechanical system. Also, first experimental results are presented, showing an efficient testing procedure method for real time data acquisition with a stable evaluation of the flow curve.open11617Nsciescopu
ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms
BACKGROUND:
Wild-type (wt) polyglutamine (polyQ) regions are implicated in stabilization of protein-protein interactions (PPI). Pathological polyQ expansion, such as that in human Ataxin-1 (ATXN1), that causes spinocerebellar ataxia type 1 (SCA1), results in abnormal PPI. For ATXN1 a larger number of interactors has been reported for the expanded (82Q) than the wt (29Q) protein.
METHODS:
To understand how the expanded polyQ affects PPI, protein structures were predicted for wt and expanded ATXN1, as well as, for 71 ATXN1 interactors. Then, the binding surfaces of wt and expanded ATXN1 with the reported interactors were inferred.
RESULTS:
Our data supports that the polyQ expansion alters the ATXN1 conformation and that it enhances the strength of interaction with ATXN1 partners. For both ATXN1 variants, the number of residues at the predicted binding interface are greater after the polyQ, mainly due to the AXH domain. Moreover, the difference in the interaction strength of the ATXN1 variants was due to an increase in the number of interactions at the N-terminal region, before the polyQ, for the expanded form.
CONCLUSIONS:
There are three regions at the AXH domain that are essential for ATXN1 PPI. The N-terminal region is responsible for the strength of the PPI with the ATXN1 variants. How the predicted motifs in this region affect PPI is discussed, in the context of ATXN1 post-transcriptional modifications.This work was financed by the project Norte-01-0145-FEDER-000008 -Porto
Neurosciences and Neurologic Disease Research Initiative at I3S, supported
by Norte Portugal Regional Operational Programme (NORTE 2020), under the
PORTUGAL 2020 Partnership Agreement, through the European Regional Development
Fund (FEDER). Sara Rocha is supported by a post-doctoral fellowship
under this project. Hugo López-Fernández is supported by a postdoctoral
fellowship from Xunta de Galicia (ED481B 2016/068–0). SING group
thanks Consellería de Educación, Universidades e Formación Profesional
(Xunta de Galicia) for the ED431C2018/55-GRC grant and CITI (Centro de
Investigación, Transferencia e Innovación) from University of Vigo for hosting
its IT infrastructure. The funding bodies played no role in the design of the
study and collection, analysis, and interpretation of data and in writing the
manuscript
Deletion of BmoR affects the expression of genes related to thiol/disulfide balance in Bacteroides fragilis
Bacteroides fragilis, an opportunistic pathogen and commensal bacterium in the gut, is one the most
aerotolerant species among strict anaerobes. However, the mechanisms that control gene regulation in
response to oxidative stress are not completely understood. In this study, we show that the MarR type
regulator, BmoR, regulates the expression of genes involved in the homeostasis of intracellular redox
state. Transcriptome analysis showed that absence of BmoR leads to altered expression in total of 167
genes. Sixteen of these genes had a 2-fold or greater change in their expression. Most of these genes
are related to LPS biosynthesis and carbohydrates metabolism, but there was a signifcant increase
in the expression of genes related to the redox balance inside the cell. A pyridine nucleotide-disulfde
oxidoreductase located directly upstream of bmoR was shown to be repressed by direct binding of
BmoR to the promoter region. The expression of two other genes, coding for a thiosulphate:quinoneoxidoreductase and a thioredoxin, are indirectly afected by bmoR mutation during oxygen exposure.
Phenotypic assays showed that BmoR is important to maintain the thiol/disulfde balance in the cell,
confrming its relevance to B. fragilis response to oxidative stress
Interstellar Turbulence II: Implications and Effects
Interstellar turbulence has implications for the dispersal and mixing of the
elements, cloud chemistry, cosmic ray scattering, and radio wave propagation
through the ionized medium. This review discusses the observations and theory
of these effects. Metallicity fluctuations are summarized, and the theory of
turbulent transport of passive tracers is reviewed. Modeling methods, turbulent
concentration of dust grains, and the turbulent washout of radial abundance
gradients are discussed. Interstellar chemistry is affected by turbulent
transport of various species between environments with different physical
properties and by turbulent heating in shocks, vortical dissipation regions,
and local regions of enhanced ambipolar diffusion. Cosmic rays are scattered
and accelerated in turbulent magnetic waves and shocks, and they generate
turbulence on the scale of their gyroradii. Radio wave scintillation is an
important diagnostic for small scale turbulence in the ionized medium, giving
information about the power spectrum and amplitude of fluctuations. The theory
of diffraction and refraction is reviewed, as are the main observations and
scintillation regions.Comment: 46 pages, 2 figures, submitted to Annual Reviews of Astronomy and
Astrophysic
Teoria x Prática: Panorama inicial sobre a inserção das Tecnologias Digitais no Ensino Superior presencial e a distância na UFSM/ Theory x Practice: An initial overview of the insertion of digital technologies into classroom and distance higher education at UFSM
A inserção das Tecnologias Digitais de Comunicação e Informação no Ensino Superior é consolidada? Este estudo tem como objetivo investigar as tecnologias como metodologias de ensino, bem como as dicotomias no âmbito educacional no Ensino Superior presencial e a distância em dois cursos de licenciatura da Universidade Federal de Santa Maria: no Programa Especial de Graduação de Professores e no curso de Letras - Espanhol respectivamente. Para isso, optou-se por um estudo de multicasos, de caráter empírico e de natureza quali-quantitativa. Os resultados apontaram para a significância do uso das TDCI nos dois cursos analisados. Entretanto, tendo em vista as metodologias de ensino, foi possível perceber que é necessário um maior movimento no sentido de implantar ações tecnológicas como parte do processo de ensino-aprendizagem nos cursos de licenciatura
Ecological research in the Large-scale Biosphere-Atmosphere Experiment in Amazonia: Early results
Copyright by the Ecological Society of America ©2004 Michael Keller, Ane Alencar, Gregory P. Asner, Bobby Braswell, Mercedes Bustamante, Eric Davidson, Ted Feldpausch, Erick Fernandes, Michael Goulden, Pavel Kabat, Bart Kruijt, Flavio Luizão, Scott Miller, Daniel Markewitz, Antonio D. Nobre, Carlos A. Nobre, Nicolau Priante Filho, Humberto da Rocha, Pedro Silva Dias, Celso von Randow, and George L. Vourlitis 2004. ECOLOGICAL RESEARCH IN THE LARGE-SCALE BIOSPHERE– ATMOSPHERE EXPERIMENT IN AMAZONIA: EARLY RESULTS. Ecological Applications 14:3–16. http://dx.doi.org/10.1890/03-6003The Large-scale Biosphere–Atmosphere Experiment in Amazonia (LBA) is a multinational, interdisciplinary research program led by Brazil. Ecological studies in LBA focus on how tropical forest conversion, regrowth, and selective logging influence carbon storage, nutrient dynamics, trace gas fluxes, and the prospect for sustainable land use in the Amazon region. Early results from ecological studies within LBA emphasize the variability within the vast Amazon region and the profound effects that land-use and land-cover changes are having on that landscape. The predominant land cover of the Amazon region is evergreen forest; nonetheless, LBA studies have observed strong seasonal patterns in gross primary production, ecosystem respiration, and net ecosystem exchange, as well as phenology and tree growth. The seasonal patterns vary spatially and interannually and evidence suggests that these patterns are driven not only by variations in weather but also by innate biological rhythms of the forest species. Rapid rates of deforestation have marked the forests of the Amazon region over the past three decades. Evidence from ground-based surveys and remote sensing show that substantial areas of forest are being degraded by logging activities and through the collapse of forest edges. Because forest edges and logged forests are susceptible to fire, positive feedback cycles of forest degradation may be initiated by land-use-change events. LBA studies indicate that cleared lands in the Amazon, once released from cultivation or pasture usage, regenerate biomass rapidly. However, the pace of biomass accumulation is dependent upon past land use and the depletion of nutrients by unsustainable land-management practices. The challenge for ongoing research within LBA is to integrate the recognition of diverse patterns and processes into general models for prediction of regional ecosystem function
Satisfaction survey with DNA cards method to collect genetic samples for pharmacogenetics studies
BACKGROUND: Pharmacogenetic studies are essential in understanding the interindividual variability of drug responses. DNA sample collection for genotyping is a critical step in genetic studies. A method using dried blood samples from finger-puncture, collected on DNA-cards, has been described as an alternative to the usual venepuncture technique. The purpose of this study is to evaluate the implementation of the DNA cards method in a multicentre clinical trial, and to assess the degree of investigators' satisfaction and the acceptance of the patients perceived by the investigators. METHODS: Blood samples were collected on DNA-cards. The quality and quantity of DNA recovered were analyzed. Investigators were questioned regarding their general interest, previous experience, safety issues, preferences and perceived patient satisfaction. RESULTS: 151 patients' blood samples were collected. Genotyping of GST polymorphisms was achieved in all samples (100%). 28 investigators completed the survey. Investigators perceived patient satisfaction as very good (60.7%) or good (39.3%), without reluctance to finger puncture. Investigators preferred this method, which was considered safer and better than the usual methods. All investigators would recommend using it in future genetic studies. CONCLUSION: Within the clinical trial setting, the DNA-cards method was very well accepted by investigators and patients (in perception of investigators), and was preferred to conventional methods due to its ease of use and safety
Risk classification in an emergency room: agreement level between a Brazilian institutional and the Manchester Protocol
The aim of this study was to assess the level of agreement between an institutional protocol and the Manchester protocol for the risk assessment of patients attended in an emergency room of a public hospital in Belo Horizonte - MG - Brazil. This is a descriptive and comparative study, in which 382 patients' reports were evaluated and the risk was classified, using the institutional protocol and the Manchester protocol. Rates were calculated through weighted and unweighted kappa, in order to determine the level of agreement between the protocols. The results showed that the correlation between the protocols is average when considering that classification errors occurred between neighboring colors (kappa=0.48), and good when considering that classification errors occurred between extreme colors (kappa=0.61). The Manchester protocol increased the patients' level of priority of patients and has been considered more inclusive.Este estudio tuvo por objetivo verificar el grado de concordancia entre un protocolo institucional y el protocolo de Manchester para la clasificación de riesgo de pacientes atendidos en primeros auxilios de un hospital público de Belo Horizonte - MG - Brasil. Se trata de estudio descriptivo comparativo en el cual 382 fichas fueron evaluadas y, realizada la clasificación de riesgo utilizando los protocolos mencionados encima, a partir del registro realizado por los enfermeros. Índices kappa ponderado y no ponderado fueron calculados para determinar el grado de concordancia entre los protocolos. Los resultados mostraron que la concordancia entre los protocolos es media, cuando considerados los errores de clasificación ocurridos entre colores vecinos (kappa=0,48) y buena, cuando considerados los errores de clasificación ocurridos entre colores extremos (kappa=0,61). Se concluye que el protocolo de Manchester aumentó el nivel de prioridad de los pacientes, demostrando ser un protocolo que incluye más.Este estudo teve por objetivo verificar o grau de concordância entre um protocolo institucional e o protocolo de Manchester, para a classificação de risco de pacientes atendidos no pronto-socorro de um hospital público de Belo Horizonte, MG, Brasil. Trata-se de estudo descritivo comparativo, no qual 382 prontuários foram avaliados e realizada a classificação de risco, utilizando os protocolos mencionados acima, a partir do registro realizado pelos enfermeiros. Índices Kappa ponderado e não ponderado foram calculados para determinar o grau de concordância entre os protocolos. Os resultados mostraram que a concordância entre os protocolos é média, quando considerados os erros de classificação, ocorridos entre cores vizinhas (Kappa=0,48) e boa, quando considerados os erros de classificação, ocorridos entre cores extremas (Kappa=0,61). Conclui-se que o protocolo de Manchester aumentou o nível de prioridade dos pacientes, demonstrando ser protocolo mais inclusivo
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