Assessment of the barramundi (Lates calcarifer) fishery in the Southern Gulf of Carpentaria, Queensland, Australia.

Wild-capture barramundi (Lates calcarifer) forms the basis of important commercial, recreational and customary Indigenous fisheries in Queensland, with an estimated harvest of about 700 tonnes in 2015 (Saunders et al. 2016). For stock status assessment, barramundi in Queensland are considered to consist of seven genetically distinct populations. Within the Gulf of Carpentaria (GoC), there are two genetic stocks split at around 13⁰ S - a Northern Gulf of Carpentaria stock and a Southern Gulf of Carpentaria stock. The Gulf of Carpentaria Inshore Fin Fish Fishery harvests barramundi from both these stocks, but the current assessment focuses on the Southern Gulf of Carpentaria (Southern GoC) barramundi stock, which produces, on average, greater than 50% of the annual commercial harvest of barramundi in Queensland and was listed as transitional-depleting in the 2016 Status of Australian Fish Stocks report (Saunders et al. 2016)

Epigenetics underpins phenotypic plasticity of protandrous sex change in fish

Abstract Phenotypic plasticity is an important driver of species resilience. Often mediated by epigenetic changes, phenotypic plasticity enables individual genotypes to express variable phenotypes in response to environmental change. Barramundi (Lates calcarifer) are a protandrous (male-first) sequential hermaphrodite that exhibits plasticity in length-at-sex change between geographic regions. This plasticity is likely to be mediated by changes in DNA methylation (DNAm), a well-studied epigenetic modification. To investigate the relationships between length, sex, and DNAm in a sequential hermaphrodite, here, we compare DNAm in four conserved vertebrate sex-determining genes in male and female barramundi of differing lengths from three geographic regions of northern Australia. Barramundi first mature as male and later sex change to female upon the attainment of a larger body size; however, a general pattern of increasing female-specific DNAm markers with increasing length was not observed. Significant differences in DNAm between males and females of similar lengths suggest that female-specific DNAm arises rapidly during sex change, rather than gradually with fish growth. The findings also reveal that region-specific differences in length-at-sex change are accompanied by differences in DNAm and are consistent with variability in remotely sensed sea temperature and salinity. Together, these findings provide the first in situ evidence for epigenetically and environmentally mediated sex change in a protandrous hermaphrodite and offer significant insight into the molecular and ecological processes governing the marked and unique plasticity of sex in fish

Understanding environmental and fisheries factors causing fluctuations in mud crab and blue swimmer crab fisheries in Northern Australia to inform harvest strategies

The current project investigated relationships between environmental factors and harvests of crabs in the Gulf of Carpentaria (GoC), northern Australia. This was in response to industry and managerial concerns about consistent declines in harvests of GoC Giant Mud Crab (Scylla serrata). In the orthern Territory (NT), declines occurred between 2009 and 2016, whilst in Queensland (Qld), declines occurred between 2013 and 2016. The declines occurred despite different management arrangements (e.g. NT harvests females, whereas Qld does not), suggesting common environmental factors were involved

Contribution of three rivers to floodplain and coastal productivity in the Gulf of Carpentaria: Finfish catch and growth

Barramundi were used as an indicator species for the effects of river flows on estuaries because they use a variety of aquatic habitats (marine to freshwater) and are an iconic fisheries species of significance in northern Australia. The Fisheries Queensland commercial catch logbook and monitoring data for length, age and reproductive data provide a long-term data series of this estuarine-dependent species in the Gulf of Carpentaria (GoC)

Revolutionising Fish Ageing: Using Near Infrared Spectroscopy to Age Fish

The project aimed to evaluate the innovative application of NIRS as a reliable, repeatable, and cost-effective method of ageing fish, using otoliths of Barramundi and Snapper as study species. Specific research questions included assessing how geographic and seasonal variation in otoliths affects NIRS predictive models of fish age, as well as how the NIR spectra of otoliths change in the short-term (i.e., <12 months) and long-term (i.e., historical otolith collections) and what effect this has on the predictive ability of NIRS models. The cost-effectiveness of using NIRS to supplement standard fish ageing methods was also evaluated using a hypothetical case study of Barramundi

Quantitative assessment of the Queensland saucer scallop (Amusium balloti) fishery

In recent years (2015 and 2016) there has been growing concern from members of the fishing industry and the Queensland Government over declining catches of legal-sized saucer scallop. This led to a request in mid-2016 by Fisheries Queensland, the fisheries management service within the Department of Agriculture and Fisheries, for an investigative analysis of the status of saucer scallops. The scope of the investigation was limited to a short time frame of three months to urgently analyse the most recent data and undertake a stock assessment. This report provides findings that support the concerns about low abundance of legal-sized scallops. Average catch rates from January 2015 to April 2016 were the lowest in the 39-year record. These recent average catch rates are slightly lower than those in 1996 when the scallop population size fell to low levels and emergency closed areas were implemented by the Government. From these data the model estimates of spawning stock in 2015 are potentially as low as 5-6% of 1977 levels, when the fishery was in its early development

Flow impacts on estuarine finfish fisheries of the Gulf of Carpentaria

The estuaries of Australia s tropical rivers support commercial fisheries for finfish and shellfish valued at over $220 million per annum. There are also significant tourism-related and local recreational and indigenous fisheries for icon species such as barramundi. Development of water resources in Australia's Tropical Rivers region is being considered for the Flinders, Mitchell, McArthur, Roper, Daly and Victoria catchments. Greater knowledge of the freshwater requirements of tropical aquatic ecosystems, including estuaries is crucial, so that the communities of catchments where water resource development occurs can be assured that the downstream effects of such development are considered and managed based on the best available knowledge