Vortex annihilation in the ordering kinetics of the O(2) model

The vortex-vortex and vortex-antivortex correlation functions are determined for the two-dimensional O(2) model undergoing phase ordering. We find reasonably good agreement with simulation results for the vortex-vortex correlation function where there is a short-scaled distance depletion zone due to the repulsion of like-signed vortices. The vortex-antivortex correlation function agrees well with simulation results for intermediate and long-scaled distances. At short-scaled distances the simulations show a depletion zone not seen in the theory.Comment: 28 pages, REVTeX, submitted to Phys. Rev.

Phase ordering in bulk uniaxial nematic liquid crystals

The phase-ordering kinetics of a bulk uniaxial nematic liquid crystal is addressed using techniques that have been successfully applied to describe ordering in the O(n) model. The method involves constructing an appropriate mapping between the order-parameter tensor and a Gaussian auxiliary field. The mapping accounts both for the geometry of the director about the dominant charge 1/2 string defects and biaxiality near the string cores. At late-times t following a quench, there exists a scaling regime where the bulk nematic liquid crystal and the three-dimensional O(2) model are found to be isomorphic, within the Gaussian approximation. As a consequence, the scaling function for order-parameter correlations in the nematic liquid crystal is exactly that of the O(2) model, and the length characteristic of the strings grows as $t^{1/2}$. These results are in accord with experiment and simulation. Related models dealing with thin films and monopole defects in the bulk are presented and discussed.Comment: 21 pages, 3 figures, REVTeX, submitted to Phys. Rev.

Evidence Favoring Molybdenum−Carbon Bond Formation in Xanthine Oxidase Action: \u3csup\u3e17\u3c/sup\u3eO- and \u3csup\u3e13\u3c/sup\u3eC-ENDOR and Kinetic Studies

The reaction mechanism of the molybdoenzyme xanthine oxidase has been further investigated by 13C and 17O ENDOR of molybdenum(V) species and by kinetic studies of exchange of oxygen isotopes. Three EPR signal-giving species were studied:  (i) Very Rapid, a transient intermediate in substrate turnover, (ii) Inhibited, the product of an inhibitory side reaction with aldehyde substrates, and (iii) Alloxanthine, a species formed by reaction of reduced enzyme with the inhibitor, alloxanthine. The Very Rapid signal was developed either with [8-13C]xanthine or with 2-oxo-6-methylpurine using enzyme equilibrated with [17O]H2O. The Inhibited signal was developed with 2H13C2HO and the Alloxanthine signal by using [17O]H2O. Estimates of Mo−C distances were made, from the anisotropic components of the 13C-couplings, by corrected dipolar coupling calculations and by back-calculation from assumed possible structures. Estimated distances in the Inhibited and Very Rapid species were about 1.9 and less than 2.4 Å, respectively. A Mo−C bond in the Inhibited species is very strongly suggested, presumably associated with side-on bonding to molybdenum of the carbonyl of the aldehyde substrate. For the Very Rapid species, a Mo−C bond is highly likely. Coupling from a strongly coupled 17O, not in the form of an oxo group, and no coupling from other oxygens was detected in the Very Rapid species. No coupled oxygens were detected in the Alloxanthine species. That the coupled oxygen of the Very Rapid species is the one that appears in the product uric acid molecule was confirmed by new kinetic data. It is concluded that this oxygen of the Very Rapid species does not, as frequently assumed, originate from the oxo group of the oxidized enzyme. A new turnover mechanism is proposed, not involving direct participation of the oxo ligand group, and based on that of Coucouvanis et al. [Coucouvanis, D., Toupadakis, A., Lane, J. D., Koo, S. M., Kim, C. G., Hadjikyriacou, A. (1991) J. Am. Chem. Soc. 113, 5271−5282]. It involves formal addition of the elements of the substrate (e.g., xanthine) across the MoS double bond, to give a Mo(VI) species. This is followed by attack of a “buried” water molecule (in the vicinity of molybdenum and perhaps a ligand of it) on the bound substrate carbon, to give an intermediate that on intramolecular one-electron oxidation gives the Very Rapid species. The latter, in keeping with the 13C, 17O, and 33S couplings, is presumed to have the 8-CO group of the uric acid product molecule bonded side-on to molybdenum, with the sulfido molybdenum ligand retained, as in the oxidized enzyme

Recovery of Forest Floor Diversity After Removal of the Nonnative, Invasive Plant Euonymus fortunei

The vine Euonymus fortunei (Turcz.) Hand.-Mazz. is invading forests of the eastern United States; as a result, removal of E. fortunei has become a priority of resource managers. This study examined the effectiveness of five techniques for eliminating E. fortunei, restoring plant species richness, and enhancing recolonization by woody species. In 2003, the following five treatments were applied: burn with a propane torch, light exclusion by plastic tarp, burn and glyphosate application, cut (simulated grazing) and glyphosate application, mow and glyphosate application, plus an untreated control. Each treatment was replicated four times in a randomized block design located in a heavily E. fortunei–invaded forest remnant in Lexington, KY. Vegetation was surveyed in 2004, 2005, 2006, 2007, and 2013. Across years, most treatments were associated with reduced E. fortunei cover and increased total species richness. Over time, E. fortunei cover increased across treatments, such that by 2013, no difference in E. fortunei cover was detectible among treatments. Some differences in total and native species richness among treatments were still perceptible by 2013. Increased E. fortunei cover was correlated with decreased ground-layer species richness, native species richness, sapling richness, and sapling density. Light exclusion by plastic tarp, a method absent from many management recommendations, was unique in its long-term reduction of E. fortunei cover and its association with increased total species richness, but use of plastic tarps may have drawbacks. This study quantified the long-term community effects of removing an established invasive species from a mature, urban forest. Removal allowed native plants, notably woody species, to reestablish. Because richness continues to decline as E. fortunei reinhabits plots, land managers seeking to conserve biodiversity under conditions similar to those within our study site should maintain proactive E. fortunei removal plans

Mechanism of Vanadium Leaching during Surface Weathering of Basic Oxygen Furnace Steel Slag Blocks: A Microfocus X-ray Absorption Spectroscopy and Electron Microscopy Study

© 2017 American Chemical Society. Basic oxygen furnace (BOF) steelmaking slag is enriched in potentially toxic V which may become mobilized in high pH leachate during weathering. BOF slag was weathered under aerated and air-excluded conditions for 6 months prior to SEM/EDS and μXANES analysis to determine V host phases and speciation in both primary and secondary phases. Leached blocks show development of an altered region in which free lime and dicalcium silicate phases were absent and Ca-Si-H was precipitated (CaCO 3 was also present under aerated conditions). μXANES analyses show that V was released to solution as V(V) during dicalcium silicate dissolution and some V was incorporated into neo-formed Ca-Si-H. Higher V concentrations were observed in leachate under aerated conditions than in the air-excluded leaching experiment. Aqueous V concentrations were controlled by Ca 3 (VO 4 ) 2 solubility, which demonstrate an inverse relationship between Ca and V concentrations. Under air-excluded conditions Ca concentrations were controlled by dicalcium silicate dissolution and Ca-Si-H precipitation, leading to relatively high Ca and correspondingly low V concentrations. Formation of CaCO 3 under aerated conditions provided a sink for aqueous Ca, allowing higher V concentrations limited by kinetic dissolution rates of dicalcium silicate. Thus, V release may be slowed by the precipitation of secondary phases in the altered region, improving the prospects for slag reuse

Regulated Expression of Human Histocompatibility Leukocyte Antigen (HLA)-DO During Antigen-dependent and Antigen-independent Phases of B Cell Development

Human histocompatibility leukocyte antigen (HLA)-DO, a lysosomal resident major histocompatibility complex class II molecule expressed in B cells, has previously been shown to be a negative regulator of HLA-DM peptide loading function. We analyze the expression of DO in human peripheral blood, lymph node, tonsil, and bone marrow to determine if DO expression is modulated in the physiological setting. B cells, but not monocytes or monocyte-derived dendritic cells, are observed to express this protein. Preclearing experiments demonstrate that ∼50% of HLA-DM is bound to DO in peripheral blood B cells. HLA-DM and HLA-DR expression is demonstrated early in B cell development, beginning at the pro-B stage in adult human bone marrow. In contrast, DO expression is initiated only after B cell development is complete. In all situations, there is a striking correlation between intracellular DO expression and cell surface class II–associated invariant chain peptide expression, which suggests that DO substantially inhibits DM function in primary human B cells. We report that the expression of DO is markedly downmodulated in human germinal center B cells. Modulation of DO expression may provide a mechanism to regulate peptide loading activity and antigen presentation by B cells during the development of humoral immune responses

Fluctuations and defect-defect correlations in the ordering kinetics of the O(2) model

The theory of phase ordering kinetics for the O(2) model using the gaussian auxiliary field approach is reexamined from two points of view. The effects of fluctuations about the ordering field are included and we organize the theory such that the auxiliary field correlation function is analytic in the short-scaled distance (x) expansion. These two points are connected and we find in the refined theory that the divergence at the origin in the defect-defect correlation function $\tilde{g}(x)$ obtained in the original theory is removed. Modifications to the order-parameter autocorrelation exponent $\lambda$ are computed.Comment: 29 pages, REVTeX, to be published in Phys. Rev. E. Minor grammatical/syntax changes from the origina

Summary of second annual MCBK public meeting: Mobilizing Computable Biomedical Knowledge—A movement to accelerate translation of knowledge into action

The volume of biomedical knowledge is growing exponentially and much of this knowledge is represented in computer executable formats, such as models, algorithms and programmatic code. There is a growing need to apply this knowledge to improve health in Learning Health Systems, health delivery organizations, and other settings. However, most organizations do not yet have the infrastructure required to consume and apply computable knowledge, and national policies and standards adoption are not sufficient to ensure that it is discoverable and used safely and fairly, nor is there widespread experience in the process of knowledge implementation as clinical decision support. The Mobilizing Computable Biomedical Knowledge (MCBK) community formed in 2016 to address these needs. This report summarizes the main outputs of the Second Annual MCBK public meeting, which was held at the National Institutes of Health on July 18‐19, 2019 and brought together over 150 participants from various domains to frame and address important dimensions for mobilizing CBK.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/154970/1/lrh2-sup-0001-supinfo.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/154970/2/lrh210222.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/154970/3/lrh210222_am.pd