Optimizing PatchCore for Few/many-shot Anomaly Detection

Few-shot anomaly detection (AD) is an emerging sub-field of general AD, and tries to distinguish between normal and anomalous data using only few selected samples. While newly proposed few-shot AD methods do compare against pre-existing algorithms developed for the full-shot domain as baselines, they do not dedicatedly optimize them for the few-shot setting. It thus remains unclear if the performance of such pre-existing algorithms can be further improved. We address said question in this work. Specifically, we present a study on the AD/anomaly segmentation (AS) performance of PatchCore, the current state-of-the-art full-shot AD/AS algorithm, in both the few-shot and the many-shot settings. We hypothesize that further performance improvements can be realized by (I) optimizing its various hyperparameters, and by (II) transferring techniques known to improve few-shot supervised learning to the AD domain. Exhaustive experiments on the public VisA and MVTec AD datasets reveal that (I) significant performance improvements can be realized by optimizing hyperparameters such as the underlying feature extractor, and that (II) image-level augmentations can, but are not guaranteed, to improve performance. Based on these findings, we achieve a new state of the art in few-shot AD on VisA, further demonstrating the merit of adapting pre-existing AD/AS methods to the few-shot setting. Last, we identify the investigation of feature extractors with a strong inductive bias as a potential future research direction for (few-shot) AD/AS

The Medical Segmentation Decathlon

International challenges have become the de facto standard for comparative assessment of image analysis algorithms given a specific task. Segmentation is so far the most widely investigated medical image processing task, but the various segmentation challenges have typically been organized in isolation, such that algorithm development was driven by the need to tackle a single specific clinical problem. We hypothesized that a method capable of performing well on multiple tasks will generalize well to a previously unseen task and potentially outperform a custom-designed solution. To investigate the hypothesis, we organized the Medical Segmentation Decathlon (MSD) - a biomedical image analysis challenge, in which algorithms compete in a multitude of both tasks and modalities. The underlying data set was designed to explore the axis of difficulties typically encountered when dealing with medical images, such as small data sets, unbalanced labels, multi-site data and small objects. The MSD challenge confirmed that algorithms with a consistent good performance on a set of tasks preserved their good average performance on a different set of previously unseen tasks. Moreover, by monitoring the MSD winner for two years, we found that this algorithm continued generalizing well to a wide range of other clinical problems, further confirming our hypothesis. Three main conclusions can be drawn from this study: (1) state-of-the-art image segmentation algorithms are mature, accurate, and generalize well when retrained on unseen tasks; (2) consistent algorithmic performance across multiple tasks is a strong surrogate of algorithmic generalizability; (3) the training of accurate AI segmentation models is now commoditized to non AI experts

The Liver Tumor Segmentation Benchmark (LiTS)

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LITS) organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2016 and International Conference On Medical Image Computing Computer Assisted Intervention (MICCAI) 2017. Twenty four valid state-of-the-art liver and liver tumor segmentation algorithms were applied to a set of 131 computed tomography (CT) volumes with different types of tumor contrast levels (hyper-/hypo-intense), abnormalities in tissues (metastasectomie) size and varying amount of lesions. The submitted algorithms have been tested on 70 undisclosed volumes. The dataset is created in collaboration with seven hospitals and research institutions and manually reviewed by independent three radiologists. We found that not a single algorithm performed best for liver and tumors. The best liver segmentation algorithm achieved a Dice score of 0.96(MICCAI) whereas for tumor segmentation the best algorithm evaluated at 0.67(ISBI) and 0.70(MICCAI). The LITS image data and manual annotations continue to be publicly available through an online evaluation system as an ongoing benchmarking resource.Comment: conferenc

Transfer Learning Gaussian Anomaly Detection by Fine-tuning Representations

Current state-of-the-art anomaly detection (AD) methods exploit the powerful representations yielded by large-scale ImageNet training. However, catastrophic forgetting prevents the successful fine-tuning of pre-trained representations on new datasets in the semi-supervised setting, and representations are therefore commonly fixed. In our work, we propose a new method to overcome catastrophic forgetting and thus successfully fine-tune pre-trained representations for AD in the transfer learning setting. Specifically, we induce a multivariate Gaussian distribution for the normal class based on the linkage between generative and discriminative modeling, and use the Mahalanobis distance of normal images to the estimated distribution as training objective. We additionally propose to use augmentations commonly employed for vicinal risk minimization in a validation scheme to detect onset of catastrophic forgetting. Extensive evaluations on the public MVTec dataset reveal that a new state of the art is achieved by our method in the AD task while simultaneously achieving anomaly segmentation performance comparable to prior state of the art. Further, ablation studies demonstrate the importance of the induced Gaussian distribution as well as the robustness of the proposed fine-tuning scheme with respect to the choice of augmentations.Comment: Camera ready for IMPROVE22 + additional typo fixe