Predicting the whispering gallery mode spectra of microresonators

The whispering gallery modes (WGMs) of optical resonators have prompted intensive research efforts due to their usefulness in the field of biological sensing, and their employment in nonlinear optics. While much information is available in the literature on numerical modeling of WGMs in microspheres, it remains a challenging task to be able to predict the emitted spectra of spherical microresonators. Here, we establish a customizable Finite- Difference Time-Domain (FDTD)-based approach to investigate the WGM spectrum of microspheres. The simulations are carried out in the vicinity of a dipole source rather than a typical plane-wave beam excitation, thus providing an effective analogue of the fluorescent dye or nanoparticle coatings used in experiment. The analysis of a single dipole source at different positions on the surface or inside a microsphere, serves to assess the relative efficiency of nearby radiating TE and TM modes, characterizing the profile of the spectrum. By varying the number, positions and alignments of the dipole sources, different excitation scenarios can be compared to analytic models, and to experimental results. The energy flux is collected via a nearby disk-shaped region. The resultant spectral profile shows a dependence on the configuration of the dipole sources. The power outcoupling can then be optimized for specific modes and wavelength regions. The development of such a computational tool can aid the preparation of optical sensors prior to fabrication, by preselecting desired the optical properties of the resonator.Comment: Approved version for SPIE Photonics West, LASE, Laser Resonators, Microresonators and Beam Control XV

A viscoelastic Rivlin-Ericksen material model applicable to glacier ice

We present a viscoelastic constitutive relation which describes transient creep of a modified second grade fluid enhanced with elastic properties of a solid. The material law describes a Rivlin-Ericksen material and is a generalization of existing material laws applied to study the viscoelastic properties of ice. The intention is to provide a formulation tailored to reproduce the viscoelastic behaviour of ice ranging from the instantaneous elastic response, to recoverable deformation, to viscous, stationary flow at the characteristic minimum creep rate associated with the deformation of polycrystalline ice. We numerically solve the problem of a slab of material shearing down a uniformly inclined plate. The equations are made dimensionless in a form in which elastic effects and/or the influence of higher order terms (i.e., strain accelerations) can be compared with viscous creep at the minimum creep rate by means of two dimensionless parameters. We discuss the resulting material behaviour and the features exhibited at different parameter combinations. Also, a viable range of the non-dimensional parameters is estimated in the scale analysis

Pilot-scale Production of Functionalized mcl-PHA from Grape Pomace Supplemented with Fatty Acids

Bioprocess optimization is a prime target to decrease the cost of functionalized medium-chain-length poly(3-hydroxyalkanoate) (mcl-PHA). We have already demonstrated at the laboratory scale that the pomace of white wine grapes is a promising growth substrate for the biosynthesis of mcl-PHA that is both cheap and does not compete with food and land use. Here, we report the scale-up of a 2-step, 100 L bioprocess with Pseudomonas putida KT2440 involving: (1) a batch growth phase on extract of Gewürztraminer grape pomace, and (2) a fed-batch polymer accumulation phase with a linear feed of 50 mol % octanoic acid and 50 mol % 10-undecenoic acid. With this approach, we achieved a cell dry weight of 14.2 ± 0.3 g L–1 containing 41.1 ± 1.3 wt % of poly(3-hydroxyoctanoate-co-3-hydroxy-10-undecenoate) with 53 mol % and 47 mol % of saturated and unsaturated monomers, respectively. The molecular weight (Mw) was 139 000 Da (PDI = 1.97) and DSC analysis showed a Tg of –45.5 °C but no Tm thus indicating a completely amorphous polymer

Method for predicting whispering gallery mode spectra of spherical microresonators

A full three-dimensional Finite-Difference Time-Domain (FDTD)-based toolkit is developed to simulate the whispering gallery modes of a microsphere in the vicinity of a dipole source. This provides a guide for experiments that rely on efficient coupling to the modes of microspheres. The resultant spectra are compared to those of analytic models used in the field. In contrast to the analytic models, the FDTD method is able to collect flux from a variety of possible collection regions, such as a disk-shaped region. The customizability of the technique allows one to consider a variety of mode excitation scenarios, which are particularly useful for investigating novel properties of optical resonators, and are valuable in assessing the viability of a resonator for biosensing.Comment: Published 10 Apr 2015 in Opt. Express Vol. 23, Issue 8, pp. 9924-9937; The FDTD toolkit supercomputer scripts are hosted at: http://sourceforge.net/projects/npps/files/FDTD_WGM_Simulator

Research on oxygen toxicity at the cellular level Final report, 15 Apr. 1965 - 15 Jun. 1966

Oxygen toxicity at cellular level in manned spacecraf

Discriminative prototype selection methods for graph embedding

Graphs possess a strong representational power for many types of patterns. However, a main limitation in their use for pattern analysis derives from their difficult mathematical treatment. One way of circumventing this problem is that of transforming the graphs into a vector space by means of graph embedding. Such an embedding can be conveniently obtained by using a set of prototype graphs and a dissimilarity measure. However, when we apply this approach to a set of class-labelled graphs, it is challenging to select prototypes capturing both the salient structure within each class and inter-class separation. In this paper, we introduce a novel framework for selecting a set of prototypes from a labelled graph set taking their discriminative power into account. Experimental results showed that such a discriminative prototype selection framework can achieve superior results in classification compared to other well-established prototype selection approaches. © 2012 Elsevier Ltd

Combining bone resorption markers and heel quantitative ultrasound to discriminate between fracture cases and controls

Summary: This nested case-control analysis of a Swiss ambulatory cohort of elderly women assessed the discriminatory power of urinary markers of bone resorption and heel quantitative ultrasound for non-vertebral fractures. The tests all discriminated between cases and controls, but combining the two strategies yielded no additional relevant information. Introduction: Data are limited regarding the combination of bone resorption markers and heel quantitative bone ultrasound (QUS) in the detection of women at risk for fracture. Methods: In a nested case-control analysis, we studied 368 women (mean age 76.2 ± 3.2years), 195 with low-trauma non-vertebral fractures and 173 without, matched for age, BMI, medical center, and follow-up duration, from a prospective study designed to predict fractures. Urinary total pyridinolines (PYD) and deoxypyridinolines (DPD) were measured by high performance liquid chromatography. All women underwent bone evaluations using Achilles+ and Sahara heel QUS. Results: Areas under the receiver operating-characteristic curve (AUC) for discriminative models of the fracture group, with 95% confidence intervals, were 0.62 (0.56-0.68) and 0.59 (0.53-0.65) for PYD and DPD, and 0.64 (0.58-0.69) and 0.65 (0.59-0.71) for Achilles+ and Sahara QUS, respectively. The combination of resorption markers and QUS added no significant discriminatory information to either measurement alone with an AUC of 0.66 (0.60-0.71) for Achilles+ with PYD and 0.68 (0.62-0.73) for Sahara with PYD. Conclusions: Urinary bone resorption markers and QUS are equally discriminatory between non-vertebral fracture patients and controls. However, the combination of bone resorption markers and QUS is not better than either test used alon

Automatic human action recognition in videos by graph embedding

The problem of human action recognition has received increasing attention in recent years for its importance in many applications. Yet, the main limitation of current approaches is that they do not capture well the spatial relationships in the subject performing the action. This paper presents an initial study which uses graphs to represent the actor's shape and graph embedding to then convert the graph into a suitable feature vector. In this way, we can benefit from the wide range of statistical classifiers while retaining the strong representational power of graphs. The paper shows that, although the proposed method does not yet achieve accuracy comparable to that of the best existing approaches, the embedded graphs are capable of describing the deformable human shape and its evolution along the time. This confirms the interesting rationale of the approach and its potential for future performance. © 2011 Springer-Verlag

Dynamic self-referencing approach to whispering gallery mode biosensing and its application to measurement within undiluted serum

Biosensing within complex biological samples requires a sensor that can compensate for fluctuations in the signal due to changing environmental conditions and nonspecific binding events. To achieve this, we developed a novel self-referenced biosensor consisting of two almost identically sized dye-doped polystyrene microspheres placed on adjacent holes at the tip of a microstructured optical fiber (MOF). Here self-referenced biosensing is demonstrated with the detection of Neutravidin in undiluted, immunoglobulin-deprived human serum samples. The MOF allows remote excitation and collection of the whispering gallery modes (WGMs) of the microspheres while also providing a robust and easy to manipulate dip-sensing platform. By taking advantage of surface functionalization techniques, one microsphere acts as a dynamic reference, compensating for nonspecific binding events and changes in the environment (such as refractive index and temperature), while the other microsphere is functionalized to detect a specific interaction. The almost identical size allows the two spheres to have virtually identical refractive index sensitivity and surface area, while still having discernible WGM spectra. This ensures their responses to nonspecific binding and environmental changes are almost identical, whereby any specific changes, such as binding events, can be monitored via the relative movement between the two sets of WGM peaks.Tess Reynolds, Alexandre Franc, ois, Nicolas Riesen, Michelle E. Turvey, Stephen J. Nicholls, Peter Hoffmann, and Tanya M. Monr