Investigation of a 2-Colour Undulator FEL Using Puffin

Initial studies of a 2-colour FEL amplifier using one monoenergetic electron beam are presented. The interaction is modelled using the unaveraged, broadband FEL code Puffin. A series of undulator modules are tuned to generate two resonant frequencies along the FEL interaction and a self-consistent 2-colour FEL interaction at widely spaced non-harmonic wavelengths at 1nm and 2.4nm is demonstrated.Comment: Submitted to The 35th International Free-Electron Laser Conference, Manhattan, New York (2013

Jack in the Box

Behold the bloodless puppet rising out a cheap quadrangular man-hole. Fluorescent mandarin hair forming a deceptive heart around alabaster skin, framing his daisy petal eyes, his pink colossal nose, and boomerang mouth. ~excerpt from poe

Doors

Staunch sentries of decision gloating and imposing tempting and untrustworthy. ~excerpt from poe

Microbial reduction of iron and porewater biogeochemistry in acidic peatlands

International audienceTemporal drying of upper soil layers of acidic methanogenic peatlands might divert the flow of reductants from CH4 formation to other electron-accepting processes due to a renewal of alternative electron acceptors. In this study, we evaluated the in situ relevance of Fe(III)-reducing microbial activities in peatlands of a forested catchment that differed in their hydrology. Intermittent seeps reduced sequentially nitrate, Fe(III), and sulfate during periods of water saturation. Due to the acidic soil conditions, released Fe(II) was transported with the groundwater flow and accumulated as Fe(III) in upper soil layers of a lowland fen apparently due to oxidation. Microbial Fe(III) reduction in the upper soil layer accounted for 26.7 and 71.6% of the anaerobic organic carbon mineralization in the intermittent seep and the lowland fen, respectively. In an upland fen not receiving exogenous Fe, Fe(III) reduction contributed only to 6.7%. Fe(II) and acetate accumulated in deeper porewater of the lowland fen with maximum concentrations of 7 and 3 mM, respectively. Both supplemental glucose and acetate stimulated the reduction of Fe(III) indicating that fermentative, incomplete, and complete oxidizers were involved in Fe(II) formation in the acidic fen. Amplification of DNA yielded PCR products specific for Acidiphilium-, Geobacter-, and Geothrix-, but not for Shewanella- or Anaeroromyxobacter-related sequences. Porewater biogeochemistry observed during a 3-year-period suggests that increased drought periods and subsequent intensive rainfalls due to global climate change will further favor Fe(III) and sulfate as alternative electron acceptors due to the storage of their reduced compounds in the soil

Rectangular Beads from the Final Gravettian Level of the Abri Pataud: Raw Material Identification and its Archaeological Implications

The Final Gravettian level (level 2) of the abri Pataud (Dordogne, France) yielded a large assemblage of body ornaments that consists essentially of 85 quite standardized rectangular beads. Some uncertainty remained about the raw material in which these small beads were made: mammoth ivory, reindeer antler or bone? Non-invasive methods were employed in order to determine the raw material. First chemical analyses using microbeam Proton Induced X-ray Emission analysis (microPIXE) did not enable us to conclude definitively. Therefore, synchrotron and laboratory X-ray microtomography (microCT) were applied on eight beads and allowed us to identify ivory for all of them except for one, which shows slightly different morphological features.Le niveau 2 (Gravettien final) de l’abri Pataud (Dordogne, France) a livré un nombre important d’éléments de parure. L’essentiel (n : 85) correspond à des perles rectangulaires assez standardisées. Certaines incertitudes demeuraient sur leur matière première : ivoire de mammouth, bois de renne ou os ? Des méthodes non-invasives ont alors été employées pour déterminer la nature précise de celles-ci. Les analyses élémentaires par spectrométrie d’émission X induite par particules (PIXE) n’ayant pas été concluantes, la microtomographie de rayons X en laboratoire et au synchrotron a été utilisée sur huit perles et a permis d’identifier le matériau comme étant de l’ivoire, excepté pour l’une d’entre elles qui présente quelques légères différences de structure

Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering

The RFAM database defines families of ncRNAs by means of sequence similarities that are sufficient to establish homology. In some cases, such as microRNAs and box H/ACA snoRNAs, functional commonalities define classes of RNAs that are characterized by structural similarities, and typically consist of multiple RNA families. Recent advances in high-throughput transcriptomics and comparative genomics have produced very large sets of putative noncoding RNAs and regulatory RNA signals. For many of them, evidence for stabilizing selection acting on their secondary structures has been derived, and at least approximate models of their structures have been computed. The overwhelming majority of these hypothetical RNAs cannot be assigned to established families or classes. We present here a structure-based clustering approach that is capable of extracting putative RNA classes from genome-wide surveys for structured RNAs. The LocARNA (local alignment of RNA) tool implements a novel variant of the Sankoff algorithm that is sufficiently fast to deal with several thousand candidate sequences. The method is also robust against false positive predictions, i.e., a contamination of the input data with unstructured or nonconserved sequences. We have successfully tested the LocARNA-based clustering approach on the sequences of the RFAM-seed alignments. Furthermore, we have applied it to a previously published set of 3,332 predicted structured elements in the Ciona intestinalis genome (Missal K, Rose D, Stadler PF (2005) Noncoding RNAs in Ciona intestinalis. Bioinformatics 21 (Supplement 2): i77–i78). In addition to recovering, e.g., tRNAs as a structure-based class, the method identifies several RNA families, including microRNA and snoRNA candidates, and suggests several novel classes of ncRNAs for which to date no representative has been experimentally characterized

Design considerations for table-top, laser-based VUV and X-ray free electron lasers

A recent breakthrough in laser-plasma accelerators, based upon ultrashort high-intensity lasers, demonstrated the generation of quasi-monoenergetic GeV-electrons. With future Petawatt lasers ultra-high beam currents of ~100 kA in ~10 fs can be expected, allowing for drastic reduction in the undulator length of free-electron-lasers (FELs). We present a discussion of the key aspects of a table-top FEL design, including energy loss and chirps induced by space-charge and wakefields. These effects become important for an optimized table-top FEL operation. A first proof-of-principle VUV case is considered as well as a table-top X-ray-FEL which may open a brilliant light source also for new ways in clinical diagnostics.Comment: 6 pages, 4 figures; accepted for publication in Appl. Phys.

INVESTIGATION OF A 2-COLOUR UNDULATOR FEL USING PUFFIN

Abstract Initial studies of a 2-colour FEL amplifier using one monoenergetic electron beam are presented. The interaction is modelled using the unaveraged, broadband FEL code Puffin. A series of undulator modules are tuned to generate two resonant frequencies along the FEL interaction and a self-consistent 2-colour FEL interaction at widely spaced non-harmonic wavelengths at 1nm and 2.4nm is demonstrated

Si-compatible candidates for high-K dielectrics with the Pbnm perovskite structure

We analyze both experimentally (where possible) and theoretically from first-principles the dielectric tensor components and crystal structure of five classes of Pbnm perovskites. All of these materials are believed to be stable on silicon and are therefore promising candidates for high-K dielectrics. We also analyze the structure of these materials with various simple models, decompose the lattice contribution to the dielectric tensor into force constant matrix eigenmode contributions, explore a peculiar correlation between structural and dielectric anisotropies in these compounds and give phonon frequencies and infrared activities of those modes that are infrared-active. We find that CaZrO_3, SrZrO_3, LaHoO_3, and LaYO_3 are among the most promising candidates for high-K dielectrics among the compounds we considered.Comment: 17 pages, 9 figures, 4 tables. Supplementary information: http://link.aps.org/supplemental/10.1103/PhysRevB.82.064101 or http://www.physics.rutgers.edu/~sinisa/highk/supp.pd