Castanea sativa Ancient Trees Across Europe: Genetic Diversity And Conservation Strategy

Long-living trees are witnesses of environmental changes and human interventions; these extraordinary organisms not only represent a historical, landscape and environmental heritage of inestimable value, but they also are a reserve of genetic variability which can considered as a great resource for management programs of forest species. This is the first genetic study on Italian ancient chestnut trees (Castanea sativa Mill.). Ninety-nine ancient trees including the oldest known chestnut in Europe, named ‘Cento Cavalli’, which is believed to be to be between 3,000 and 4,000 years old, were collected. For each tree, more than one sample from canopy and root suckers was collected to test for the genetic integrity of the individuals The samples were genotyped using nine nuclear microsatellite markers (nSSRs) and two chloroplast markers (cpDNA). Genetic variability indices were evaluated using GeneAlEx 6.5, GenoDive 3.0 and HP-rare software. We identified a total of 106 unique genetic profiles within the analyzed individuals. A Bayesian analysis was performed using the software STRUCTURE to unveil the genetic relationships existing between the genotyped individuals. We were able to identify a geographic pattern of genetic diversity among the old chestnut trees. In addition, the genetic similarity among the ancient trees and the close chestnut populations to was studied. A phylogeographic structure of plastid diversity was also established. Our results contribute to evaluate the European chestnut genetic resources, gave insights to its domestication history and to define the best conservation and management strategies

Monumental chestnut trees: source of genetic diversity, cultural and landscape value

The monumental trees are unique individuals of venerable age and considerable size, which represent a heritage of inestimable historical, cultural, landscape, and scientific value for the territtory. They also constitute a source of genetic diversity which confers them longevity and ability to adapt to climate and environmental changes. In this context, studies on centennial trees can be useful for interpretatiton of species history as migration events, selection and anthropogenic actiton. The aim of this research was to evaluate the genetic variability of ancient Castanea sativa trees and relate them to actual natural/naturalized populatitons and varieties in order to enhance our knowledge about the demography, cultivatiton processes and the impact of these giant trees on the genetic diversity of the species. We selected a total of 182 ancient trees from Spain and Central - Southern Italy. For each tree, more than one sample was collected to test for genetic integrity and grafing. The samples were genotyped by means of nuclear microsatellite markers and the variability of plastid DNA regitons (trnH-psbA and trnK/matK) was also tested. Using the sofware GeneALex and HPrare, we evaluated observed (Hto) and expected (He) heterozygosity, allelic richness (Ar) private allelic richness (pAr). A Bayesian analysis was performed using the sofware STRUCTURE to identify the different gene pools and gentotypes. The obtained genetic data were compared with those of natural populations and cultivars collected in the same geographic areas. Higher values of allelic richness were observed in the ancient chestnut trees, a genetic similarity of these individual trees to the natural populations was highlighted. A phylogetographic structure of plastid diversity was alsto established. Eleven genotypes were coincident with 11 cultivars in the EU database. Based on the putative age of giant trees we can hyptothesize that the grafing practice occurred in the Iberian peninsula in the 15th century and in the 17th century in Italy. This work provides new knowledge about the history and domesticatiton tof European chestnut, the results are relevant for the conservatiton and management of Castanea sativa genetic resources

Transcription of endogenous retroviruses in senescent cells contributes to the accumulation of double-stranded RNAs that trigger an anti-viral response that reinforces senescence

Abstract An important epigenetic switch marks the onset and maintenance of senescence. This allows transcription of the genetic programs that arrest the cell cycle and alter the microenvironment. Transcription of endogenous retroviruses (ERVs) is also a consequence of this epigenetic switch. In this manuscript, we have identified a group of ERVs that are epigenetically silenced in proliferating cells but are upregulated during replicative senescence or during various forms of oncogene-induced senescence, by RAS and Akt, or after HDAC4 depletion. In a HDAC4 model of senescence, removal of the repressive histone mark H3K27me3 is the plausible mechanism that allows the transcription of intergenic ERVs during senescence. We have shown that ERVs contribute to the accumulation of dsRNAs in senescence, which can initiate the antiviral response via the IFIH1-MAVS signaling pathway and thus contribute to the maintenance of senescence. This pathway, and MAVS in particular, plays an active role in shaping the microenvironment and maintaining growth arrest, two essential features of the senescence program

Monuments Unveiled: Genetic Characterization of Large Old Chestnut (Castanea sativa Mill.) Trees Using Comparative Nuclear and Chloroplast DNA Analysis

Large old trees are extraordinary organisms. They not only represent a historical, landscape and environmental heritage of inestimable value, but they also witness a long history of environmental changes and human interventions, and constitute an as yet poorly known reserve of genetic variability which can be considered a great resource for management programs of forest species. This is the first genetic study on Italian, large, old chestnut trees (Castanea sativa Mill.). Ninety-nine trees were surveyed and analysed. For each tree, more than one sample from canopy and root suckers was collected to test for the genetic integrity of the individuals. All samples were genotyped using nine nuclear microsatellite markers (nSSRs) and 106 unique genetic profiles were identified. A Bayesian analysis performed with the software STRUCTURE revealed the occurrence of two main gene pools and unveiled the genetic relationships existing among the genotyped individuals, and with the natural chestnut populations living in proximity. A phylogeographic structure of the plastid diversity was also obtained by the use of DNA sequence variation at two marker regions, revealing different origins and probable connections of the old trees with different glacial refugia. Our results contribute to an improved evaluation of the European chestnut genetic resources and provide useful insights into the species’ history and domestication in Italy. The importance of carefully targeted conservation strategies for these invaluable organisms is reaffirmed