423 research outputs found
Breakdown of disordered media by surface loads
We model an interface layer connecting two parts of a solid body by N
parallel elastic springs connecting two rigid blocks. We load the system by a
shear force acting on the top side. The springs have equal stiffness but are
ruptured randomly when the load reaches a critical value. For the considered
system, we calculate the shear modulus, G, as a function of the order
parameter, \phi, describing the state of damage, and also the ``spalled''
material (burst) size distribution. In particular, we evaluate the relation
between the damage parameter and the applied force and explore the behaviour in
the vicinity of material breakdown. Using this simple model for material
breakdown, we show that damage, caused by applied shear forces, is analogous to
a first-order phase transition. The scaling behaviour of G with \phi is
explored analytically and numerically, close to \phi=0 and \phi=1 and in the
vicinity of \phi_c, when the shear load is close but below the threshold force
that causes material breakdown. Our model calculation represents a first
approximation of a system subject to wear induced loads.Comment: 15 pages, 7 figure
Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)
<p>Abstract</p> <p>Background</p> <p>Castor bean (<it>Ricinus communis</it>) is an agricultural crop and garden ornamental that is widely cultivated and has been introduced worldwide. Understanding population structure and the distribution of castor bean cultivars has been challenging because of limited genetic variability. We analyzed the population genetics of <it>R. communis </it>in a worldwide collection of plants from germplasm and from naturalized populations in Florida, U.S. To assess genetic diversity we conducted survey sequencing of the genomes of seven diverse cultivars and compared the data to a reference genome assembly of a widespread cultivar (Hale). We determined the population genetic structure of 676 samples using single nucleotide polymorphisms (SNPs) at 48 loci.</p> <p>Results</p> <p>Bayesian clustering indicated five main groups worldwide and a repeated pattern of mixed genotypes in most countries. High levels of population differentiation occurred between most populations but this structure was not geographically based. Most molecular variance occurred within populations (74%) followed by 22% among populations, and 4% among continents. Samples from naturalized populations in Florida indicated significant population structuring consistent with local demes. There was significant population differentiation for 56 of 78 comparisons in Florida (pairwise population ϕ<sub>PT </sub>values, <it>p </it>< 0.01).</p> <p>Conclusion</p> <p>Low levels of genetic diversity and mixing of genotypes have led to minimal geographic structuring of castor bean populations worldwide. Relatively few lineages occur and these are widely distributed. Our approach of determining population genetic structure using SNPs from genome-wide comparisons constitutes a framework for high-throughput analyses of genetic diversity in plants, particularly in species with limited genetic diversity.</p
Body-assisted van der Waals interaction between two atoms
Using fourth-order perturbation theory, a general formula for the van der
Waals potential of two neutral, unpolarized, ground-state atoms in the presence
of an arbitrary arrangement of dispersing and absorbing magnetodielectric
bodies is derived. The theory is applied to two atoms in bulk material and in
front of a planar multilayer system, with special emphasis on the cases of a
perfectly reflecting plate and a semi-infinite half space. It is demonstrated
that the enhancement and reduction of the two-atom interaction due to the
presence of a perfectly reflecting plate can be understood, at least in the
nonretarded limit, by using the method of image charges. For the semi-infinite
half space, both analytical and numerical results are presented.Comment: 17 pages, 9 figure
Rolling friction of a viscous sphere on a hard plane
A first-principle continuum-mechanics expression for the rolling friction
coefficient is obtained for the rolling motion of a viscoelastic sphere on a
hard plane. It relates the friction coefficient to the viscous and elastic
constants of the sphere material. The relation obtained refers to the case when
the deformation of the sphere is small, the velocity of the sphere is
much less than the speed of sound in the material and when the characteristic
time is much larger than the dissipative relaxation times of the
viscoelastic material. To our knowledge this is the first ``first-principle''
expression of the rolling friction coefficient which does not contain empirical
parameters.Comment: 6 pages, 2 figure
Anomalous density dependence of static friction in sand
We measured experimentally the static friction force on the surface of
a glass rod immersed in dry sand. We observed that is extremely sensitive
to the closeness of packing of grains. A linear increase of the grain-density
yields to an exponentially increasing friction force. We also report on a novel
periodicity of during gradual pulling out of the rod. Our observations
demonstrate the central role of grain bridges and arches in the macroscopic
properties of granular packings.Comment: plain tex, 6 pages, to appear in Phys.Rev.
Time-Resolved Studies of Stick-Slip Friction in Sheared Granular Layers
Sensitive and fast force measurements are performed on sheared granular
layers undergoing stick-slip motion, along with simultaneous imaging. A full
study has been done for spherical particles with a +-20% size distribution.
Stick-slip motion due to repetitive fluidization of the layer occurs for low
driving velocities. Between major slip events, slight creep occurs that is
variable from one event to the next. The effects of changing the stiffness k
and velocity V of the driving system are studied in detail. The stick-slip
motion is almost periodic for spherical particles over a wide range of
parameters, but becomes irregular when k is large and V is relatively small. At
larger V, the motion becomes smoother and is affected by the inertia of the
upper plate bounding the layer. Measurements of the period T and amplitude A of
the relative motion are presented as a function of V. At a critical value Vc, a
transition to continuous sliding motion occurs that is discontinuous for k not
too large. The time dependence of the instantaneous velocity of the upper plate
and the frictional force produced by the granular layer are determined within
individual slipping events. The force is a multi-valued function of the
instantaneous velocity, with pronounced hysteresis and a sudden drop prior to
resticking. Measurements of vertical displacement reveal a small dilation of
the material (about one tenth of the mean particle size in a layer 20 particles
deep) associated with each slip event. Finally, optical imaging reveals that
localized microscopic rearrangements precede (and follow) each slip event. The
behavior of smooth particles is contrasted with that of rough particles.Comment: 20, pages, 17 figures, to appear in Phys. Rev.
Castor bean organelle genome sequencing and worldwide genetic diversity analysis
Castor bean is an important oil-producing plant in the Euphorbiaceae family. Its high-quality oil contains up to 90% of the unusual fatty acid ricinoleate, which has many industrial and medical applications. Castor bean seeds also contain ricin, a highly toxic Type 2 ribosome-inactivating protein, which has gained relevance in recent years due to biosafety concerns. In order to gain knowledge on global genetic diversity in castor bean and to ultimately help the development of breeding and forensic tools, we carried out an extensive chloroplast sequence diversity analysis. Taking advantage of the recently published genome sequence of castor bean, we assembled the chloroplast and mitochondrion genomes extracting selected reads from the available whole genome shotgun reads. Using the chloroplast reference genome we used the methylation filtration technique to readily obtain draft genome sequences of 7 geographically and genetically diverse castor bean accessions. These sequence data were used to identify single nucleotide polymorphism markers and phylogenetic analysis resulted in the identification of two major clades that were not apparent in previous population genetic studies using genetic markers derived from nuclear DNA. Two distinct sub-clades could be defined within each major clade and large-scale genotyping of castor bean populations worldwide confirmed previously observed low levels of genetic diversity and showed a broad geographic distribution of each sub-clade
Theory of differential inclusions and its application in mechanics
The following chapter deals with systems of differential equations with
discontinuous right-hand sides. The key question is how to define the solutions
of such systems. The most adequate approach is to treat discontinuous systems
as systems with multivalued right-hand sides (differential inclusions). In this
work three well-known definitions of solution of discontinuous system are
considered. We will demonstrate the difference between these definitions and
their application to different mechanical problems. Mathematical models of
drilling systems with discontinuous friction torque characteristics are
considered. Here, opposite to classical Coulomb symmetric friction law, the
friction torque characteristic is asymmetrical. Problem of sudden load change
is studied. Analytical methods of investigation of systems with such
asymmetrical friction based on the use of Lyapunov functions are demonstrated.
The Watt governor and Chua system are considered to show different aspects of
computer modeling of discontinuous systems
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