Inhomogeneous Neutrino Degeneracy and Big Bang Nucleosynthesis

We examine Big Bang nucleosynthesis (BBN) in the case of inhomogenous neutrino degeneracy, in the limit where the fluctuations are sufficiently small on large length scales that the present-day element abundances are homogeneous. We consider two representive cases: degeneracy of the electron neutrino alone, and equal chemical potentials for all three neutrinos. We use a linear programming method to constrain an arbitrary distribution of the chemical potentials. For the current set of (highly-restrictive) limits on the primordial element abundances, homogeneous neutrino degeneracy barely changes the allowed range of the baryon-to-photon ratio. Inhomogeneous degeneracy allows for little change in the lower bound on the baryon-to-photon ratio, but the upper bound in this case can be as large as 1.1 \times 10^{-8} (only electron neutrino degeneracy) or 1.0 \times 10^{-9} (equal degeneracies for all three neutrinos). For the case of inhomogeneous neutrino degeneracy, we show that there is no BBN upper bound on the neutrino energy density, which is bounded in this case only by limits from structure formation and the cosmic microwave background.Comment: 6 pages, no figure

TeV scale resonant leptogenesis from supersymmetry breaking

We propose a model of TeV-scale resonant leptogenesis based upon recent models of the generation of light neutrino masses from supersymmetry-breaking effects with TeV-scale right-handed (rhd) neutrinos, $N_i$. The model leads to naturally large cosmological lepton asymmetries via the resonant behaviour of the one-loop self-energy contribution to $N_i$ decay. Our model addresses the primary problems of previous phenomenological studies of low-energy leptogenesis: a rational for TeV-scale rhd neutrinos with small Yukawa couplings so that the out-of equilibrium condition for $N_i$ decay is satisfied; the origin of the tiny, but non-zero mass splitting required between at least two $N_i$ masses; and the necessary non-trivial breaking of flavour symmetries in the rhd neutrino sector. The low mass-scale of the rhd neutrinos and their superpartners, and the TeV-scale $A$-terms automatically contained within the model offer opportunities for partial direct experimental tests of this leptogenesis mechanism at future colliders.Comment: 10 Pages latex, version for JHE

Big Bang Nucleosynthesis with Gaussian Inhomogeneous Neutrino Degeneracy

We consider the effect of inhomogeneous neutrino degeneracy on Big Bang nucleosynthesis for the case where the distribution of neutrino chemical potentials is given by a Gaussian. The chemical potential fluctuations are taken to be isocurvature, so that only inhomogeneities in the electron chemical potential are relevant. Then the final element abundances are a function only of the baryon-photon ratio $\eta$, the effective number of additional neutrinos $\Delta N_\nu$, the mean electron neutrino degeneracy parameter $\bar \xi$, and the rms fluctuation of the degeneracy parameter, $\sigma_\xi$. We find that for fixed $\eta$, $\Delta N_\nu$, and $\bar \xi$, the abundances of helium-4, deuterium, and lithium-7 are, in general, increasing functions of $\sigma_\xi$. Hence, the effect of adding a Gaussian distribution for the electron neutrino degeneracy parameter is to decrease the allowed range for $\eta$. We show that this result can be generalized to a wide variety of distributions for $\xi$.Comment: 9 pages, 3 figures, added discussion of neutrino oscillations, altered presentation of figure

A methodology for determining amino-acid substitution matrices from set covers

We introduce a new methodology for the determination of amino-acid substitution matrices for use in the alignment of proteins. The new methodology is based on a pre-existing set cover on the set of residues and on the undirected graph that describes residue exchangeability given the set cover. For fixed functional forms indicating how to obtain edge weights from the set cover and, after that, substitution-matrix elements from weighted distances on the graph, the resulting substitution matrix can be checked for performance against some known set of reference alignments and for given gap costs. Finding the appropriate functional forms and gap costs can then be formulated as an optimization problem that seeks to maximize the performance of the substitution matrix on the reference alignment set. We give computational results on the BAliBASE suite using a genetic algorithm for optimization. Our results indicate that it is possible to obtain substitution matrices whose performance is either comparable to or surpasses that of several others, depending on the particular scenario under consideration

Deep sequencing of the vaginal microbiota of women with HIV

Background:Women living with HIV and co-infected with bacterial vaginosis (BV) are at higher risk for transmitting HIV to a partner or newborn. It is poorly understood which bacterial communities constitute BV or the normal vaginal microbiota among this population and how the microbiota associated with BV responds to antibiotic treatment. Methods and Findings: The vaginal microbiota of 132 HIV positive Tanzanian women, including 39 who received metronidazole treatment for BV, were profiled using Illumina to sequence the V6 region of the 16S rRNA gene. Of note, Gardnerella vaginalis and Lactobacillus iners were detected in each sample constituting core members of the vaginal microbiota. Eight major clusters were detected with relatively uniform microbiota compositions. Two clusters dominated by L. iners or L. crispatus were strongly associated with a normal microbiota. The L. crispatus dominated microbiota were associated with low pH, but when L. crispatus was not present, a large fraction of L. iners was required to predict a low pH. Four clusters were strongly associated with BV, and were dominated by Prevotella bivia, Lachnospiraceae, or a mixture of different species. Metronidazole treatment reduced the microbial diversity and perturbed the BV-associated microbiota, but rarely resulted in the establishment of a lactobacilli-dominated microbiota. Conclusions: Illumina based microbial profiling enabled high though-put analyses of microbial samples at a high phylogenetic resolution. The vaginal microbiota among women living with HIV in Sub-Saharan Africa constitutes several profiles associated with a normal microbiota or BV. Recurrence of BV frequently constitutes a different BV-associated profile than before antibiotic treatment

Large lepton asymmetry from Q-balls

We propose a scenario which can explain large lepton asymmetry and small baryon asymmetry simultaneously. Large lepton asymmetry is generated through Affleck-Dine (AD) mechanism and almost all the produced lepton numbers are absorbed into Q-balls (L-balls). If the lifetime of the L-balls is longer than the onset of electroweak phase transition but shorter than the epoch of big bang nucleosynthesis (BBN), the large lepton asymmetry in the L-balls is protected from sphaleron effects. On the other hand, small (negative) lepton numbers are evaporated from the L-balls due to thermal effects, which are converted into the observed small baryon asymmetry by virtue of sphaleron effects. Large and positive lepton asymmetry of electron type is often requested from BBN. In our scenario, choosing an appropriate flat direction in the minimal supersymmetric standard model (MSSM), we can produce positive lepton asymmetry of electron type but totally negative lepton asymmetry.Comment: 10 pages, 3 figures, ReVTeX

Electroweak phase diagram at finite lepton number density

We study the thermodynamics of the electroweak theory at a finite lepton number density. The phase diagram of the theory is calculated by relating the full 4-dimensional theory to a 3-dimensional effective theory which has been previously solved using nonperturbative methods. It is seen that the critical temperature increases and the value of the Higgs boson mass at which the first order phase transition line ends decreases with increasing leptonic chemical potential.Comment: 16 pages, 14 figures, RevTex4, v2: references added, minor corrections, v3: small changes, references added, published in Phys. Rev.

Radio and X-ray monitoring of the accreting millisecond X-ray pulsar IGR J17591-2342 in outburst

IGR J17591$-$2342 is a new accreting millisecond X-ray pulsar (AMXP) that was recently discovered in outburst in 2018. Early observations revealed that the source's radio emission is brighter than that of any other known neutron star low-mass X-ray binary (NS-LMXB) at comparable X-ray luminosity, and assuming its likely $\gtrsim 6$ kpc distance. It is comparably radio bright to black hole LMXBs at similar X-ray luminosities. In this work, we present the results of our extensive radio and X-ray monitoring campaign of the 2018 outburst of IGR J17591$-$2342. In total we collected 10 quasi-simultaneous radio (VLA, ATCA) and X-ray (Swift-XRT) observations, which make IGR J17591$-$2342 one of the best-sampled NS-LMXBs. We use these to fit a power-law correlation index $\beta = 0.37^{+0.42}_{-0.40}$ between observed radio and X-ray luminosities ( $L_\mathrm{R}\propto L_\mathrm{X}^{\beta}$). However, our monitoring revealed a large scatter in IGR J17591$-$2342's radio luminosity (at a similar X-ray luminosity, $L_\mathrm{X} \sim 10^{36}$ erg s$^{-1}$, and spectral state), with $L_\mathrm{R} \sim 4 \times 10^{29}$ erg s$^{-1}$ during the first three reported observations, and up to a factor of 4 lower $L_\mathrm{R}$ during later radio observations. Nonetheless, the average radio luminosity of IGR J17591$-$2342 is still one of the highest among NS-LMXBs, and we discuss possible reasons for the wide range of radio luminosities observed in such systems during outburst. We found no evidence for radio pulsations from IGR J17591$-$2342 in our Green Bank Telescope observations performed shortly after the source returned to quiescence. Nonetheless, we cannot rule out that IGR J17591$-$2342 becomes a radio millisecond pulsar during quiescence.Comment: 12 pages, 3 figures, 2 tables, accepted for publication in MNRA

Global Rice Atlas: Disaggregated seasonal crop calendar and production

Purpose: Rice is an important staple crop cultivated in more than 163 million ha globally. Although information on the distribution of global rice production is available by country and, at times, at subnational level, information on its distribution within a year is often lacking in different rice growing regions. Knowing when and where rice is planted and harvested and the associated production is crucial to policy and decision making on food security. To examine seasonal and geographic variations in food supply, we developed a detailed rice crop calendar and linked it with disaggregated production data. Approach and methods used: We compiled from various sources detailed data on rice production, and planting and harvesting dates by growing season. To standardize the production data to the same period, we adjusted the production values so that the totals for each country will be the same as those of FAO for 2010-2012. We then linked data on rice production with the corresponding crop calendar information to estimate production at harvest time by month then we calculated totals for each country and region. Key results: The bulk of global annual harvests of rice is from September to November, corresponding with the harvest of the wet season rice in Asia and Africa. Total rough rice production during those peak months exceed 381 million tons, which account for about half of annual global rice output. Production is lowest in January with only 11 million tons in total. Regional production is lowest in Asia in January, Americas in December, Africa in July and rest of the world in May. Synthesis and Applications: A globally complete and spatially detailed rice crop calendar is important to crop growth simulation modelling and assessment of vulnerability of rice areas to biotic and abiotic stresses. Linked to production estimates, it can be used in analyzing spatial and seasonal production trends to better assess and predict price fluctuations , and to mitigate potential significant shortfalls in food production at certain times of the year