Managing Dynamic User Communities in a Grid of Autonomous Resources

One of the fundamental concepts in Grid computing is the creation of Virtual Organizations (VO's): a set of resource consumers and providers that join forces to solve a common problem. Typical examples of Virtual Organizations include collaborations formed around the Large Hadron Collider (LHC) experiments. To date, Grid computing has been applied on a relatively small scale, linking dozens of users to a dozen resources, and management of these VO's was a largely manual operation. With the advance of large collaboration, linking more than 10000 users with a 1000 sites in 150 counties, a comprehensive, automated management system is required. It should be simple enough not to deter users, while at the same time ensuring local site autonomy. The VO Management Service (VOMS), developed by the EU DataGrid and DataTAG projects[1, 2], is a secured system for managing authorization for users and resources in virtual organizations. It extends the existing Grid Security Infrastructure[3] architecture with embedded VO affiliation assertions that can be independently verified by all VO members and resource providers. Within the EU DataGrid project, Grid services for job submission, file- and database access are being equipped with fine- grained authorization systems that take VO membership into account. These also give resource owners the ability to ensure site security and enforce local access policies. This paper will describe the EU DataGrid security architecture, the VO membership service and the local site enforcement mechanisms Local Centre Authorization Service (LCAS), Local Credential Mapping Service(LCMAPS) and the Java Trust and Authorization Manager.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, Ca, USA, March 2003, 7 pages, LaTeX, 5 eps figures. PSN TUBT00

The Allometry of Daily Energy Expenditure in Hummingbirds: An Energy Budget Approach

1. Within-clade allometric relationships represent standard laws of scaling between energy and size, and their outliers provide new avenues for physiological and ecological research. According to the metabolic-level boundaries hypothesis, metabolic rates as a function of mass are expected to scale closer to 0.67 when driven by surface-related processes (e.g. heat or water flux), while volume-related processes (e.g. activity) generate slopes closer to one. 2. In birds, daily energy expenditure (DEE) scales with body mass (M) in the relationship log (DEE)=2.35+0.68×log (M), consistent with surface-level processes driving the relationship. However, taxon-specific patterns differ from the scaling slope of all birds. 3. Hummingbirds have the highest mass-specific metabolic rates among all vertebrates. Previous studies on a few hummingbird species, without accounting for the phylogeny, estimated that the DEE–body mass relationship for hummingbirds was log (DEE)=1.72+1.21×log (M). In Contrast to the theoretical expectations, this slope \u3e1 indicates that larger hummingbirds are less metabolically efficient than smaller hummingbirds. 4. We collected DEE and mass data for 12 hummingbird species, which, combined with published data, represented 17 hummingbird species in eight of nine hummingbird clades over a sixfold size range of body size (2.7–17.5 g). 5. After accounting for phylogenetic relatedness, we found DEE scales with body mass as log(DEE)=2.04+0.95×log (M). This slope of 0.95 is lower than previously estimated for hummingbirds, but much higher than the slope for all birds (0.68). The high slopes of torpor, hovering and flight potentially explain the high interspecific DEE slope for hummingbirds compared to other endotherms

Comparative physiology of Australian quolls (Dasyurus; Marsupialia)

Quolls (Dasyurus) are medium-sized carnivorous dasyurid marsupials. Tiger (3,840 g) and eastern quolls (780 g) are mesic zone species, northern quolls (516 g) are tropical zone, and chuditch (1,385 g) were once widespread through the Australian arid zone. We found that standard physiological variables of these quolls are consistent with allometric expectations for marsupials. Nevertheless, inter-specific patterns amongst the quolls are consistent with their different environments. The lower T ^sub b^ of northern quolls (34°C) may provide scope for adaptive hyperthermia in the tropics, and they use torpor for energy/water conservation, whereas the larger mesic species (eastern and tiger quolls) do not appear to. Thermolability varied from little in eastern (0.035°C °C^sup -1^) and tiger quolls (0.051°C ºC^sup -1^) to substantial in northern quolls (0.100°C ºC^sup -1^) and chuditch (0.146°C ºC^sup -1^), reflecting body mass and environment. Basal metabolic rate was higher for eastern quolls (0.662 ± 0.033 ml O^sub 2^ g^sup -1^ h^sup -1^), presumably reflecting their naturally cool environment. Respiratory ventilation closely matched metabolic demand, except at high ambient temperatures where quolls hyperventilated to facilitate evaporative heat loss; tiger and eastern quolls also salivated. A higher evaporative water loss for eastern quolls (1.43 ± 0.212 mg H^sub 2^O g^sup -1^ h^sup -1^) presumably reflects their more mesic distribution. The point of relative water economy was low for tiger (-1.3°C), eastern (-12.5°C) and northern (+3.3) quolls, and highest for the chuditch (+22.6°C). We suggest that these differences in water economy reflect lower expired air temperatures and hence lower respiratory evaporative water loss for the arid-zone chuditch relative to tropical and mesic quolls

Additional Thoughts on Rigor in Wildlife Science: Unappreciated Impediments

Traditionally, most scientists accepted reductionist and mechanistic approaches as the rigorous way to do science. Sells et al. (2018) recently raised the argument about reliability in wildlife science. Chamberlin (1890), Platt (1964), Romesburg (1981, 1991, 2009), and Williams (1997) were rightly referenced as very influential papers. My intention in this letter is not to refute the essence of the Sells et al. (2018) commentary but to add seldom addressed but important aspects that influence the attainment of rigor and certainty in wildlife studies. The elements of a rigorous approach (i.e., strong inference) as described by Platt (1964) included devising alternative hypotheses, devising ≥1 crucial experiments that will exclude ≥1 of the hypotheses, and carrying out the experiment to get a clean result. The process was then repeated using logical inductive trees (i.e., a continually bifurcated statement hypotheses approach) to obtain the essential cause for the effect. Platt (1964) agreed with Popper (1959) that science advanced only by disproof. He argued that this was a hard doctrine and leads to disputations between scientists, but that Chamberlin\u27s (1890) method of multiple working hypotheses helped to remove that difficulty. Platt (1964) emphasized inductive inference and crucial and critical experiments whereby alternate hypotheses are refuted. Romesburg (1981) explained that in wildlife biology, induction (reliable associations) and retroduction (developing hypotheses) were the basis for almost all wildlife research but were not sufficient. He proposed the hypothetical‐deductive (H‐D) method as a more reliable approach. Citing Harvey (1969), and Popper (1962), Romesburg (1981:294) explained that “Starting with the research hypothesis, usually obtained by retroduction, predictions are made about other classes of facts that should be true if the research hypothesis is actually true.” The hypothesis is then tested indirectly by using logic to deduce one or more test consequences (Romesburg 2014). Data are then collected in a statistical framework. Romesburg (1981) distinguished between a research hypothesis (i.e., a conjecture about some process) versus a statistical hypothesis (i.e., a conjecture about classes of facts encompassed by the process). Williams (1997) clearly explained the differences between necessary and sufficient causation and gave examples of the coherent logic both entailed. He summarized that the science endeavor included theory, hypotheses, predictions, observations, and comparison of predictions against data, and argued that inductive and deductive logic were required for testing hypotheses. Importantly, Williams (1997:1014) recognized that wildlife biology often involves simultaneous complementary explanatory factors, requiring “the framing of many scientifically interesting issues about cause and effect in terms of the relative contribution of multiple causal factors.” Over the years, many others have addressed the issue of rigor and reliability in the Journal of Wildlife Management (JWM) and the Wildlife Society Bulletin (WSB) either directly (McNab 1983, Eberhardt 1988, Anderson 2001) or indirectly (Steidl et al. 1997, Guthery et al. 2001). This is not a complete list and is limited primarily to JWM and WSB but gives an idea of the wide interest in achieving reliable results from wildlife studies

A study to assess changes in myocardial perfusion after treatment with spinal cord stimulation and percutaneous myocardial laser revascularisation; data from a randomised trial

<p>Abstract</p> <p>Background</p> <p>Spinal cord stimulation (SCS) and percutaneous myocardial laser revascularisation (PMR) are treatment modalities used to treat refractory angina pectoris, with the major aim of such treatment being the relief of disabling symptoms. This study compared the change in myocardial perfusion following SCS and PMR treatment.</p> <p>Methods</p> <p>Subjects with Canadian Cardiovascular Society class 3/4 angina and reversible perfusion defects as assessed by single-photon emission computed tomographic myocardial perfusion scintigraphy were randomised to SCS (34) or PMR (34). 28 subjects in each group underwent repeat myocardial perfusion imaging 12 months post intervention. Visual scoring of perfusion images was performed using a 20-segment model and a scale of 0 to 4.</p> <p>Results</p> <p>The mean (standard deviation) baseline summed rest score (SRS) and stress scores (SSS) were 4.6 (5.7) and 13.6 (9.0) in the PMR group and 6.1 (7.4) and 16.8 (11.6) in the SCS group. At 12 months, SRS was 5.5 (6.0) and SSS 15.3 (11.3) in the PMR group and 6.9 (8.2) and 15.1 (10.9) in the SCS group. There was no significant difference between the two treatment groups adjusted for baseline (p = 1.0 for SRS, p = 0.29 for SSS).</p> <p>Conclusion</p> <p>There was no significant difference in myocardial perfusion one year post treatment with SCS or PMR.</p

Programmed death ligand 1 is over-expressed by neutrophils in the blood of patients with active tuberculosis

Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), remains one of the world's largest infectious disease problems. Despite decades of intensive study, the immune response to Mtb is incompletely characterised, reflecting the extremely complex interaction between pathogen and host. Pathways that may alter the balance between host protection and pathogenesis are therefore of great interest. One pathway shown to play a role in the pathogenesis of chronic infections, including TB, is the programmed death-1 (PD-1) pathway. We show here that the expression of the programmed death ligand 1 (PD-L1), which interacts with PD-1, is increased in whole blood from active TB patients compared with whole blood from healthy controls or Mtb-exposed individuals, and that expression by neutrophils is largely responsible for this increase

Dirty Bomb Fallout

At present, there is a significant need to develop decontamination agents that can be used effectively after detonation of a radiological dispersal device (RDD) in an urban environment. There is also a need for the development of reproducible test surfaces to be used to determine the efficacy of the agent being developed. Researchers at Lawrence Livermore National Laboratory (LLNL), under the auspices of the US Department of Energy (DoE), conducted a field study to evaluate the deposition of an explosively dispersed radionuclide surrogate (CsCl) on grime-bearing and non-grime-bearing urban surfaces. The goal was to investigate the preparation and contamination of urban surfaces that closely mimic what one would expect to encounter following the detonation of an RDD. Migration of Cs into concrete surfaces was investigated in detail. Many non-proliferation, security and response organizations that have modeled RDD scenarios use cesium-137, as well as cobalt-60, strontium-90, americium-241 as the most likely RDD agents. Cesium-137 is an isotope of concern for possible use in an RDD due to its potential availability resulting from its widespread legitimate use in construction, geotechnical and medical industrial devices. In some Cs-containing instruments the Cesium-137 is present as the highly dispersible and water soluble salt, cesium chloride (CsCl). In this form Cs is able to rapidly disperse in the environment, as witnessed in the 1987 Goiania accident in Brazil, when inadvertent dispersal of a radiotherapy source resulted in fatalities and injuries

Observation of two new Ξb−\Xi_b^- baryon resonances

Two structures are observed close to the kinematic threshold in the $\Xi_b^0 \pi^-$ mass spectrum in a sample of proton-proton collision data, corresponding to an integrated luminosity of 3.0 fb$^{-1}$ recorded by the LHCb experiment. In the quark model, two baryonic resonances with quark content $bds$ are expected in this mass region: the spin-parity $J^P = \frac{1}{2}^+$ and $J^P=\frac{3}{2}^+$ states, denoted $\Xi_b^{\prime -}$ and $\Xi_b^{*-}$. Interpreting the structures as these resonances, we measure the mass differences and the width of the heavier state to be $m(\Xi_b^{\prime -}) - m(\Xi_b^0) - m(\pi^{-}) = 3.653 \pm 0.018 \pm 0.006$ MeV$/c^2$, $m(\Xi_b^{*-}) - m(\Xi_b^0) - m(\pi^{-}) = 23.96 \pm 0.12 \pm 0.06$ MeV$/c^2$, $\Gamma(\Xi_b^{*-}) = 1.65 \pm 0.31 \pm 0.10$ MeV, where the first and second uncertainties are statistical and systematic, respectively. The width of the lighter state is consistent with zero, and we place an upper limit of $\Gamma(\Xi_b^{\prime -}) < 0.08$ MeV at 95% confidence level. Relative production rates of these states are also reported.Comment: 17 pages, 2 figure

Altered thymic differentiation and modulation of arthritis by invariant NKT cells expressing mutant ZAP70

Various subsets of invariant natural killer T (iNKT) cells with different cytokine productions develop in the mouse thymus, but the factors driving their differentiation remain unclear. Here we show that hypomorphic alleles of Zap70 or chemical inhibition of Zap70 catalysis leads to an increase of IFN-gamma-producing iNKT cells (NKT1 cells), suggesting that NKT1 cells may require a lower TCR signal threshold. Zap70 mutant mice develop IL-17-dependent arthritis. In a mouse experimental arthritis model, NKT17 cells are increased as the disease progresses, while NKT1 numbers negatively correlates with disease severity, with this protective effect of NKT1 linked to their IFN-gamma expression. NKT1 cells are also present in the synovial fluid of arthritis patients. Our data therefore suggest that TCR signal strength during thymic differentiation may influence not only IFN-gamma production, but also the protective function of iNKT cells in arthritis