Net-Centric Design and Analysis of Information Systems

This thesis presents a unique methodology merging state of the art Internet and distributed database technology to support distributed simulations with programming language and platform independence. Standardized models of Command, Control, Communications, Computers, and Intelligence (C4I) systems using Integrated Definition (IDEF) models and executable simulation objects are placed in database repositories which can be accessed and implemented over a distributed simulation network using the Common Object Request Broker Architecture (CORBA). The CORBA distributed simulation network accesses heterogeneous distributed databases, performs distributed processes, and supports portability and reuse of simulation objects and interoperability across operating systems and programming languages

Nonresidential Building Energy Consumption Survey (NBECS)

Imputation procedures were designed for the 1983 Nonresidential Buildings Energy Consumption Survey (NBECS) of the Energy Information Administration (EIA) using 1979 NBECS data. The study included methodology development, data analysis, regression analyses, empirical evaluations of the regression models, and imputation procedures. Models considered were engineering models, stepwise regression, weighted regression, nonlinear regression, and log transformation regression. A method for determining the appropriateness of the imputation model for a particular set of independent variables is recommended. Although this study was completed in 1985, this final version of the report is being issued due to continuing requests for information. 32 tabs

Arthroscopic decompression and notchplasty for long-standing anterior cruciate ligament impingement in a patient with multiple epiphyseal dysplasia: a case report

<p>Abstract</p> <p>Introduction</p> <p>Multiple epiphyseal dysplasia is a genetically and clinically heterogeneous osteochondroplasia with symmetrical involvement. It is characterized by joint pain in childhood and early adulthood with early onset of osteoarthritis, mainly affecting the hips.</p> <p>Case presentation</p> <p>We report the case of a 20-year-old man of Asian origin with multiple epiphyseal dysplasia presenting with bilateral knee pain, stiffness and instability found to be caused by bilateral anterior cruciate ligament impingement on abnormal medial femoral condyles. Bilateral staged arthroscopic notchplasty was performed successfully, resulting in subjective relief of pain, and improved range of movement and stability.</p> <p>Conclusion</p> <p>Care should be taken not to exclude a diagnosis of multiple epiphyseal dysplasia when few of the characteristic radiographic features are evident but clinical suspicion is high. This case highlights the scope for subjective symptomatic improvement following a minimum of surgical intervention. We recommend limiting early intervention to managing symptomatic features rather than radiographic abnormalities alone.</p

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

Shewanellae are facultative γ-proteobacteria whose remarkable respiratory versatility has resulted in interest in their utility for bioremediation of heavy metals and radionuclides and for energy generation in microbial fuel cells. Extensive experimental efforts over the last several years and the availability of 21 sequenced Shewanella genomes made it possible to collect and integrate a wealth of information on the genus into one public resource providing new avenues for making biological discoveries and for developing a system level understanding of the cellular processes. The Shewanella knowledgebase was established in 2005 to provide a framework for integrated genome-based studies on Shewanella ecophysiology. The present version of the knowledgebase provides access to a diverse set of experimental and genomic data along with tools for curation of genome annotations and visualization and integration of genomic data with experimental data. As a demonstration of the utility of this resource, we examined a single microarray data set from Shewanella oneidensis MR-1 for new insights into regulatory processes. The integrated analysis of the data predicted a new type of bacterial transcriptional regulation involving co-transcription of the intergenic region with the downstream gene and suggested a biological role for co-transcription that likely prevents the binding of a regulator of the upstream gene to the regulator binding site located in the intergenic region

Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes

© The Authors 2009. This article is distributed under the terms of the Creative Commons Attribution Noncommercial License. The definitive version was published in Functional & Integrative Genomics 10 (2010): 97-110, doi:10.1007/s10142-009-0142-y.Bacteria of the genus Shewanella can thrive in different environments and demonstrate significant variability in their metabolic and ecophysiological capabilities including cold and salt tolerance. Genomic characteristics underlying this variability across species are largely unknown. In this study, we address the problem by a comparison of the physiological, metabolic, and genomic characteristics of 19 sequenced Shewanella species. We have employed two novel approaches based on association of a phenotypic trait with the number of the trait-specific protein families (Pfam domains) and on the conservation of synteny (order in the genome) of the trait-related genes. Our first approach is top-down and involves experimental evaluation and quantification of the species’ cold tolerance followed by identification of the correlated Pfam domains and genes with a conserved synteny. The second, a bottom-up approach, predicts novel phenotypes of the species by calculating profiles of each Pfam domain among their genomes and following pair-wise correlation of the profiles and their network clustering. Using the first approach, we find a link between cold and salt tolerance of the species and the presence in the genome of a Na+/H+ antiporter gene cluster. Other cold-tolerance-related genes include peptidases, chemotaxis sensory transducer proteins, a cysteine exporter, and helicases. Using the bottom-up approach, we found several novel phenotypes in the newly sequenced Shewanella species, including degradation of aromatic compounds by an aerobic hybrid pathway in Shewanella woodyi, degradation of ethanolamine by Shewanella benthica, and propanediol degradation by Shewanella putrefaciens CN32 and Shewanella sp. W3-18-1.This research was supported by the U.S. Department of Energy (DOE) Office of Biological and Environmental Research under the Genomics: GTL Program via the Shewanella Federation consortium

Possible Savings Achievable by Recipients of Training and Software Provided by the U.S Department of Energy’s Industrial Technologies Program

Through its Save Energy Now (SEN) Initiative, the U.S. Department of Energy’s (DOE’s) Industrial Technologies Program (ITP) disseminates information on energy efficient technologies and practices to U.S. industrial firms to improve the energy efficiency of their operations. Among other things, Save Energy Now conducts training sessions on a variety of energy systems that are important to industry (i.e., compressed air, steam, process heat, pumps, motors, and fans) and distributes software tools on those same topics. A recent Oak Ridge National Laboratory (ORNL) study collected information from recipients of SEN training and software regarding how much their total annual plant energy costs could be reduced by implementing the measures that they identified since receiving SEN services. Those same individuals were also queried regarding the portion of potential savings that were actually achieved. The responses revealed both similarities and differences between training and software recipients as well as substantial variation in the savings associated with the diverse energy systems addressed

Practical reporting times for environmental samples

Preanalytical holding times for environmental samples are specified because chemical and physical characteristics may change between sampling and chemical analysis. For example, the Federal Register prescribes a preanalytical holding time of 14 days for volatile organic compounds in soil stored at 4{degrees}C. The American Society for Testing Materials (ASTM) uses a more technical definition that the preanalytical holding time is the day when the analyte concentration for an environmental sample falls below the lower 99% confidence interval on the analyte concentration at day zero. This study reviews various holding time definitions and suggest a new preanalytical holding time approach using acceptable error rates for measuring an environmental analyte. This practical reporting time (PRT) approach has been applied to nineteen volatile organic compounds and four explosives in three environmental soil samples. A PRT nomograph of error rates has been developed to estimate the consequences of missing a preanalytical holding time. This nomograph can be applied to a large class of analytes with concentrations that decay linearly or exponentially with time regardless of sample matrices and storage conditions