96 research outputs found
STUDY ON ANTIOXIDANT AND CYTOTOXIC PROPERTIES OF OLEA DIOICA ROXB. CRUDE EXTRACT AND ITS PURE COMPOUND COLLECTED FROM WESTERN GHATS, KARNATAKA, INDIA.
Introduction: Olea dioica Roxb. an important medicinal tree plants used by local siddha tribes, belongs to the family Oleaceae. The parts such asleaves, bark, root, and fruits used in the traditional medicine to cure skin diseases, rheumatism, fever, and cancer.Objectives: The anti-oxidant experiment by metal chelating activity, superoxide radicals, hydroxyl radical, 2,2-diphenyl-2-picrylhydrazyl radicals,2,2-azino-bis(3-ethylbenzothiazoline)-6-sulfonic acid radical scavenging assays with in vitro cytotoxicity was tested using trypan blue dye exclusiontechnique and 3-(4, 5 dimethylthiazole-2yl)-2, 5-diphenyltetrazolium bromide assay was conducted.Results: Anti-oxidant experiments revealed that the bark ethanolic extract of the O. dioica plant parts has excellent radical scavenging activity and itsextracted pure compound, Benzene ethanol, 4-hydroxy-alcohol, showed excellent radical scavenging activity higher than the standards used. In vitrocytotoxicity experiments revealed that bark ethanolic extract has excellent cytotoxicity activity and its pure compound benzene-ethanol, 4-hydroxyalcoholalso showed excellentactivitywhichis comparablewith the standardcurcumin.Conclusion: O. dioica bark could be exploited as a valuable source of antioxidant and cytotoxic agent for pharmaceutical industry.Keywords: Olea dioica Roxb, Metal chelating, Superoxide radicals, Hydroxyl radical, 2,2-diphenyl-2-picrylhydrazyl radicals, 2,2-azinobis(3-ethylbenzothiazoline)-6-sulfonic acid radical scavenging,Trypan blue, 3-(4,5dimethylthiazole-2yl)-2,5-diphenyltetrazolium bromide assay, Benzeneethanol, 4-hydroxy-alcohol
Physico-chemical parameters and nutritive value of Pavetta crassicaulis Bremek and Olea dioica Roxb. collected from Western Ghats region of Karnataka
200-209Pavetta crassicaulis and Olea dioica are two unexplored medicinal plants used by some of the tribal communities in India, in curing different ailments such as, fever, headache and cancer. The flower of P. crassicaulis and the fruit of O. dioica were eaten by the tribes of Mizo’s, Mizoram and locals of Kerala respectively. The present study was aimed to investigate the physico-chemical, elemental composition and nutritive value of selected medicinal plant parts such as. From this experiment, it is revealed that mainly leaf, stem and root have the highest macro and micronutrients. But, even though the flower of P. crassicaulis and fruit of O. dioica have moderate macro and micronutrients showed excellent nutritive value due to higher crude protein, fat and carbohydrate. From the results, it is concluded that the flower of P. crassicaulis and fruit of O. dioica is loaded with higher crude protein, fat and carbohydrate along with appreciable macro and micronutrients. The study also gave positive feedback on the traditional use of tribes in Mizoram and tribes in Kerala, India
PRELIMINARY MYCOCHEMICAL, GAS CHROMATOGRAPHY–MASS SPECTROSCOPY ANALYSIS, AND ANTIMICROBIAL PROPERTIES OF CALOCERA VISCOSA (PERS.) FR.
Objectives: Calocera viscosa, commonly called as the yellow stagshorn, is a jelly fungus, belongs to the family of Dacrymycetales, unknown for its medicinal properties and biological activities.
Method: The sporocarps of C. viscosa (Pers.) Fr. were collected from Agumbe, Karnataka. Mycochemical and Gas chromatography–mass spectroscopy (GC–MS) analysis done by standard procedures and antibacterial activity was done by agar well diffusion method.
Results: Physicochemical was analyzed and results revealed the highest percentage of alcohol-soluble extractives were present followed by ash content. Alcohol-soluble extractives were 20.76%, total moisture content (10.9%), and foreign matter (0.5%). Extraction was done by Soxhlet apparatus using petroleum ether, chloroform, and ethanol and subjected to qualitative mycochemicals analysis both petroleum ether and chloroform extract confirms less mycochemicals, whereas ethanolic extract revealed the presence of alkaloids, tannins, flavonoids, sterols, glycosides, terpenoids, and phenols. GC–MS analysis of ethanoic extract showed many known bioactive compounds in that, 19 compounds were unknown and 21 compounds were known for its medicinal properties, most of them were food additives and flavoring agents. Antibacterial potentials were studied against pathogenic bacteria revealed that ethanolic extract showed appreciable zone of inhibition against pathogenic bacteria, in that maximum zone of inhibition showed against Klebsiella pneumonia followed by Escherichia coli and Staphylococcus aureus.
Conclusion: C. viscosa (Pers.) Fr. sporocarp can be explored for potential antibacterial with rich full of useful mycochemicals
An urban ecohydrological model to quantify the effect of vegetation on urban climate and hydrology (UT&C v1.0)
Increasing urbanization is likely to intensify the urban heat island effect, decrease outdoor thermal comfort and enhance runoff generation in cities. Urban green spaces are often proposed as a mitigation strategy to counteract these adverse effects and many recent developments of urban climate models focus on the inclusion of green and blue infrastructure to inform urban planning. However, many models still lack the ability to account for different plant types and oversimplify the interactions between the built environment, vegetation, and hydrology. In this study, we present an urban ecohydrological model, Urban Tethys-Chloris (UT&C), that combines principles of ecosystem modelling with an urban canopy scheme accounting for the biophysical and ecophysiological characteristics of roof vegetation, ground vegetation and urban trees. UT&C is a fully coupled energy and water balance model that calculates 2 m air temperature, 2 m humidity, and surface temperatures based on the infinite urban canyon approach. It further calculates all urban hydrological fluxes, including transpiration as a function of plant photosynthesis. Hence, UT&C accounts for the effects of different plant types on the urban climate and hydrology, as well as the effects of the urban environment on plant well-being and performance. UT&C performs well when compared against energy flux measurements of eddy covariance towers located in three cities in different climates (Singapore, Melbourne, Phoenix). A sensitivity analysis, performed as a proof of concept for the city of Singapore, shows a mean decrease in 2 m air temperature of 1.1 °C for fully grass covered ground, 0.2 °C for high values of leaf area index (LAI), and 0.3 °C for high values of Vc,max (an expression of photosynthetic activity). These reductions in temperature were combined with a simultaneous increase in relative humidity by 6.5 %, 2.1 %, and 1.6 %, for fully grass covered ground, high values of LAI, and high values of Vc,max, respectively. Furthermore, the increase of pervious vegetated ground is able to significantly reduce surface runoff. These results show that urban greening can lead to a decrease in urban air temperature and surface runoff, but this effect is limited in cities characterized by a hot, humid climate.ISSN:1991-962XISSN:1991-961
Prebiotic diet normalizes aberrant immune and behavioral phenotypes in a mouse model of autism spectrum disorder
Autism spectrum disorder (ASD) is a cluster of neurodevelopmental disorders characterized by deficits in communication and behavior. Increasing evidence suggests that the microbiota-gut-brain axis and the likely related immune imbalance may play a role in the development of this disorder. Gastrointestinal deficits and gut microbiota dysfunction have been linked to the development or severity of autistic behavior. Therefore, treatments that focus on specific diets may improve gastrointestinal function and aberrant behavior in individuals with ASD. In this study, we investigated whether a diet containing specific prebiotic fibers, namely, 3% galacto-oligosaccharide/fructo-oligosaccharide (GOS/FOS; 9:1), can mitigate the adverse effects of in utero exposure to valproic acid (VPA) in mice. Pregnant BALB/cByJ dams were injected with VPA (600 mg/kg, sc.) or phosphate-buffered saline (PBS) on gestational day 11 (G11). Male offspring were divided into four groups: (1) in utero PBS-exposed with a control diet, (2) in utero PBS-exposed with GOS/FOS diet, (3) in utero VPA-exposed with a control diet, and (4) in utero VPA-exposed with GOS/FOS diet. Dietary intervention started from birth and continued throughout the duration of the experiment. We showed that the prebiotic diet normalized VPA-induced alterations in male offspring, including restoration of key microbial taxa, intestinal permeability, peripheral immune homeostasis, reduction of neuroinflammation in the cerebellum, and impairments in social behavior and cognition in mice. Overall, our research provides valuable insights into the gut-brain axis involvement in ASD development. In addition, dietary interventions might correct the disbalance in gut microbiota and immune responses and, ultimately, might improve detrimental behavioral outcomes in ASD
Depletion of abscisic acid levels in roots of flooded Carrizo citrange (Poncirus trifoliata L. Raf. x Citrus sinensis L. Osb.) plants is a stress-specific response associated to the differential expression of PYR/PYL/RCAR receptors
[EN] Soil flooding reduces root abscisic acid (ABA) levels in citrus, conversely to what happens under drought. Despite this reduction, microarray analyses suggested the existence of a residual ABA signaling in roots of flooded Carrizo citrange seedlings. The comparison of ABA metabolism and signaling in roots of flooded and water stressed plants of Carrizo citrange revealed that the hormone depletion was linked to the upregulation of CsAOG, involved in ABA glycosyl ester (ABAGE) synthesis, and to a moderate induction of catabolism (CsCYP707A, an ABA 8'-hydroxylase) and buildup of dehydrophaseic acid (DPA). Drought strongly induced both ABA biosynthesis and catabolism (CsNCED1, 9-cis-neoxanthin epoxycarotenoid dioxygenase 1, and CsCYP707A) rendering a significant hormone accumulation. In roots of flooded plants, restoration of control ABA levels after stress release was associated to the upregulation of CsBGLU18 (an ABA beta-glycosidase) that cleaves ABAGE. Transcriptional profile of ABA receptor genes revealed a different induction in response to soil flooding (CsPYL5) or drought (CsPYL8). These two receptor genes along with CsPYL1 were cloned and expressed in a heterologous system. Recombinant CsPYL5 inhibited Delta NHAB1 activity in vitro at lower ABA concentrations than CsPYL8 or CsPYL1, suggesting its better performance under soil flooding conditions. Both stress conditions induced ABA-responsive genes CsABI5 and CsDREB2A similarly, suggesting the occurrence of ABA signaling in roots of flooded citrus seedlings. The impact of reduced ABA levels in flooded roots on CsPYL5 expression along with its higher hormone affinity reinforce the role of this ABA receptor under soil-flooding conditions and explain the expression of certain ABA-responsive genes.This work was supported by Ministerio de Economia y Competitividad (MINECO), Fondo Europeo de Desarrollo Regional (FEDER) and Universitat Jaume I through grants No. AGL201676574-R, UJI-B2016-23/UJI-B2016-24 to A.G-C. and V.A. and MINECO, FEDER and Consejo Superior de Investigaciones Cientificas (CSIC) through grant BIO2014-52537-R to P.L.R. S.I.Z. and M.M. were supported by predoctoral grants from Universitat Jaume I and Generalitat Valenciana, respectively. M.G.G. was recipient of a "JAE-DOC" contract from the CSIC. Mass spectrometry analyses were performed at the central facilities (Servei Central d'Instrumentacio Cientifica, SCIC) of Universitat Jaume I.Arbona, V.; Zandalinas, SI.; Manzi, M.; González Guzmán, M.; Rodríguez Egea, PL.; Gómez-Cadenas, A. (2017). Depletion of abscisic acid levels in roots of flooded Carrizo citrange (Poncirus trifoliata L. Raf. x Citrus sinensis L. Osb.) plants is a stress-specific response associated to the differential expression of PYR/PYL/RCAR receptors. Plant Molecular Biology. 93(6):623-640. https://doi.org/10.1007/s11103-017-0587-7S623640936Agarwal PK, Jha B (2010) Transcription factors in plants and ABA dependent and independent abiotic stress signalling. Biol Plant 54:201–212Agustí J, Merelo P, Cercós M, Tadeo FR, Talón M (2008) Ethylene-induced differential gene expression during abscission of citrus leaves. J Exp Bot 59:2717–2733. doi: 10.1093/jxb/ern138Antoni R, Gonzalez-Guzman M, Rodriguez L, Rodrigues A, Pizzio G, Rodriguez PL (2012) Selective inhibition of clade a phosphatases type 2 C by PYR/PYL/RCAR abscisic acid receptors. Plant Physiol 158:970–980. doi: 10.1104/pp.111.188623Antoni R, Gonzalez-Guzman M, Rodriguez L, Peirats-Llobet M, Pizzio G, Fernandez M, De Winne N, De Jaeger G, Dietrich D, Bennett MJ, Rodriguez PL (2013) PYRABACTIN RESISTANCE1-LIKE8 plays an important role for the regulation of abscisic acid signaling in root. Plant Physiol 161:491–931. doi: 10.1104/pp.112.208678Arbona V, Gómez-Cadenas A (2008) Hormonal modulation of citrus responses to flooding. J Plant Growth Regul 27:241–250. doi: 10.1007/s00344-008-9051-xArbona V, López-climent MF, Pérez-Clemente RM, Gómez-cadenas A (2009) Maintenance of a high photosynthetic performance is linked to flooding tolerance in citrus. Environ Exp Bot 66:135–142. doi: 10.1016/j.envexpbot.2008.12.011Argamasilla R, Gómez-Cadenas A, Arbona V (2013) Metabolic and regulatory responses in citrus rootstocks in response to adverse environmental conditions. J Plant Growth Regul 33:169–180. doi: 10.1007/s00344-013-9359-zBaron KN, Schroeder DF, Stasolla C (2012) Transcriptional response of abscisic acid (ABA) metabolism and transport to cold and heat stress applied at the reproductive stage of development in Arabidopsis thaliana. Plant Sci 188–189:48–59. doi: 10.1016/j.plantsci.2012.03.001Benschop JJ, Millenaar FF, Smeets ME, Van Zanten M, Voesenek LACJ, Peeters AJM (2007) Abscisic acid antagonizes ethylene-induced hyponastic growth in Arabidopsis. Plant Physiol 143:1013–1023Chen R, Jiang H, Li L, Zhai Q, Qi L, Zhou W, Liu X, Li H, Zheng W, Sun J, Li C (2012) The Arabidopsis mediator subunit MED25 differentially regulates jasmonate and abscisic acid signaling through interacting with the MYC2 and ABI5 transcription factors. Plant Cell 24:2898–2916. doi: 10.1105/tpc.112.098277De Ollas C, Hernando B, Arbona V, Gómez-Cadenas A (2013) Jasmonic acid transient accumulation is needed for abscisic acid increase in citrus roots under drought stress conditions. Physiol Plant 147:296–306. doi: 10.1111/j.1399-3054.2012.01659.xDupeux F, Santiago J, Betz K, Twycross J, Park S-Y, Rodriguez L, Gonzalez-Guzman M, Jensen MR, Krasnogor N, Blackledge M, Holdsworth M, Cutler SR, Rodriguez PL, Márquez JA (2011) A thermodynamic switch modulates abscisic acid receptor sensitivity. EMBO J 30:4171–4184. doi: 10.1038/emboj.2011.294Finkelstein RR, Rock CD (2002) Abscisic Acid biosynthesis and response. Arabidopsis Book 1:e0058. doi: 10.1199/tab.0058Fuchs S, Tischer SV, Wunschel C, Christmann A, Grill E (2014) Abscisic acid sensor RCAR7/PYL13, specific regulator of protein phosphatase coreceptors. Proc Natl Acad Sci U S A 111:5741–5746. doi: 10.1073/pnas.1322085111Fukao T, Yeung E, Bailey-Serres J (2011) The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell 23:412–427. doi: 10.1105/tpc.110.080325Gonzalez-Guzman M, Rodriguez L, Lorenzo-Orts L, Pons C, Sarrion-Perdigones A, Fernandez M a, Peirats-Llobet M, Forment J, Moreno-Alvero M, Cutler SR, Albert A, Granell A, Rodriguez PL (2014) Tomato PYR/PYL/RCAR abscisic acid receptors show high expression in root, differential sensitivity to the abscisic acid agonist quinabactin, and the capability to enhance plant drought resistance. J Exp Bot 65:1–14. doi: 10.1093/jxb/eru219González-Guzmán M, Apostolova N, Bellés JM, Barrero JM, Piqueras P, Ponce MR, Micol JL, Serrano R, Rodríguez PL (2002) The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde. Plant Cell 14:1833–1846. doi: 10.1105/tpc.002477.developmentHsu F-C, Chou M-Y, Peng H-P, Chou S-J, Shih M-C (2011) Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis. PLoS ONE 6:e28888. doi: 10.1371/journal.pone.0028888Krochko JE, Abrams GD, Loewen MK, Abrams SR, Cutler AJ (1998) (+)-Abscisic Acid 8-hydroxylase is a cytochrome P450 monooxygenase. Plant Physiol 860:849–860. doi: 10.1104/pp.118.3.849Lawlor DW (2013) Genetic engineering to improve plant performance under drought: physiological evaluation of achievements, limitations, and possibilities. J Exp Bot 64:83–108. doi: 10.1093/jxb/ers326Lee SC, Luan S (2012) ABA signal transduction at the crossroad of biotic and abiotic stress responses. Plant Cell Environ 35:53–60. doi: 10.1111/j.1365-3040.2011.02426.xLiu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10:1391–1406Mittal A, Gampala SSL, Ritchie GL, Payton P, Burke JJ, Rock CD (2014) Related to ABA-Insensitive3(ABI3)/Viviparous1 and AtABI5 transcription factor coexpression in cotton enhances drought stress adaptation. Plant Biotechnol J 12:578–589. doi: 10.1111/pbi.12162Naika M, Shameer K, Mathew OK, Gowda R, Sowdhamini R (2013) STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. Plant Cell Physiol 54:e8. doi: 10.1093/pcp/pcs185Nambara E, Marion-Poll A (2005) Abscisic acid biosynthesis and catabolism. Annu Rev Plant Biol 56:165–185. doi: 10.1146/annurev.arplant.56.032604.144046Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J 34:137–148Okamoto M, Kuwahara A, Seo M, Kushiro T, Asami T, Hirai N (2006) CYP707A1 and CYP707A2, which encode abscisic acid 8′-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis. Plant Physiol 141:97–107. doi: 10.1104/pp.106.079475.1Okamoto M, Peterson FC, Defries A, Park S-Y, Endo A, Nambara E, Volkman BF, Cutler SR (2013) Activation of dimeric ABA receptors elicits guard cell closure, ABA-regulated gene expression, and drought tolerance. Proc Natl Acad Sci USA 110:12132–12137. doi: 10.1073/pnas.1305919110Priest DM, Ambrose SJ, Vaistij FE, Elias L, Higgins GS, Ross ARS, Abrams SR, Bowles DJ (2006) Use of the glucosyltransferase UGT71B6 to disturb abscisic acid homeostasis in Arabidopsis thaliana. Plant J 46:492–502. doi: 10.1111/j.1365-313X.2006.02701.xRitchie M, Phipson B, Wu D, Hu Y, Law C, Shi W, Smyth G (2015) Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 43:e47Rodríguez-Gamir J, Ancillo G, González-Mas MC, Primo-Millo E, Iglesias DJ, Forner-Giner MA (2011) Root signalling and modulation of stomatal closure in flooded citrus seedlings. Plant Physiol Biochem 49:636–645. doi: 10.1016/j.plaphy.2011.03.003Romero P, Lafuente MT, Rodrigo MJ (2012a) The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration. J Exp Bot 63:4931–4945Romero P, Rodrigo MJ, Alférez F, Ballester A-R, González-Candelas L, Zacarías L, Lafuente MT (2012b) Unravelling molecular responses to moderate dehydration in harvested fruit of sweet orange (Citrus sinensis L. Osbeck) using a fruit-specific ABA-deficient mutant. J Exp Bot 63:2753–2767. doi: 10.1093/jxb/err461Saika H, Okamoto M, Miyoshi K, Kushiro T, Shinoda S, Jikumaru Y, Fujimoto M, Arikawa T, Takahashi H, Ando M, Arimura S-I, Miyao A, Hirochika H, Kamiya Y, Tsutsumi N, Nambara E, Nakazono M (2007) Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8′-hydroxylase in rice. Plant Cell Physiol 48:287–298. doi: 10.1093/pcp/pcm003Santiago J, Dupeux F, Betz K, Antoni R, Gonzalez-Guzman M, Rodriguez L, Márquez JA, Rodriguez PL (2012) Structural insights into PYR/PYL/RCAR ABA receptors and PP2Cs. Plant Sci 182:3–11. doi: 10.1016/j.plantsci.2010.11.014Schroeder JI, Nambara E (2006) A quick release mechanism for abscisic acid. Cell 126:1023–1025. doi: 10.1016/j.cell.2006.09.001Seiler C, Harshavardhan VT, Rajesh K, Reddy PS, Strickert M, Rolletschek H, Scholz U, Wobus U, Sreenivasulu N (2011) ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions. J Exp Bot 62:2615–2632. doi: 10.1093/jxb/erq446Shimamura S, Yoshioka T, Yamamoto R, Hiraga S, Nakamura T, Shimada S, Komatsu S (2014) Role of abscisic acid in flood-induced secondary aerenchyma formation in soybean (Glycine max) hypocotyls. Plant Prod Sci 17:131–137. doi: 10.1626/pps.17.131Szostkiewicz I, Richter K, Kepka M, Demmel S, Ma Y, Korte A, Assaad FF, Christmann A, Grill E (2010) Closely related receptor complexes differ in their ABA selectivity and sensitivity. Plant J 61:25–35. doi: 10.1111/j.1365-313X.2009.04025.xTanaka H, Osakabe Y, Katsura S, Mizuno S, Maruyama K, Kusakabe K, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K (2012) Abiotic stress-inducible receptor-like kinases negatively control ABA signaling in Arabidopsis. Plant J 70:599–613. doi: 10.1111/j.1365-313X.2012.04901.xValdés AE, Övernäs E, Johansson H, Rada-Iglesias A, Engström P (2012) The homeodomain-leucine zipper (HD-Zip) class I transcription factors ATHB7 and ATHB12 modulate abscisic acid signalling by regulating protein phosphatase 2C and abscisic acid receptor gene activities. Plant Mol Biol 80:405–418. doi: 10.1007/s11103-012-9956-4Weng J-K, Ye M, Noel JP (2016) Co-evolution of hormone metabolism and signaling networks expands plant adaptive plasticity. Cell 166:881–893Yamaguchi M, Sharp RE (2010) Complexity and coordination of root growth at low water potentials: recent advances from transcriptomic and proteomic analyses. Plant Cell Environ 33:590–603. doi: 10.1111/j.1365-3040.2009.02064.xYoshida T, Mogami J, Yamaguchi-Shinozaki K (2014) ABA-dependent and ABA-independent signaling in response to osmotic stress in plants. Curr Opin Plant Biol 21C:133–139. doi: 10.1016/j.pbi.2014.07.009Zhao Y, Xing L, Wang X, Hou Y-H, Gao J, Wang P, Duan C-G, Zhu X, Zhu J-K (2014) The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes. Sci Signal 7:ra53Zou M, Guan Y, Ren H, Zhang F, Chen F (2008) A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant Mol Biol 66:675–683. doi: 10.1007/s11103-008-9298-
Rice Stress-Resistant SNP Database.
BACKGROUND:Rice (Oryza sativa L.) yield is limited inherently by environmental stresses, including biotic and abiotic stresses. Thus, it is of great importance to perform in-depth explorations on the genes that are closely associated with the stress-resistant traits in rice. The existing rice SNP databases have made considerable contributions to rice genomic variation information but none of them have a particular focus on integrating stress-resistant variation and related phenotype data into one web resource. RESULTS:Rice Stress-Resistant SNP database (http://bioinformatics.fafu.edu.cn/RSRS) mainly focuses on SNPs specific to biotic and abiotic stress-resistant ability in rice, and presents them in a unified web resource platform. The Rice Stress-Resistant SNP (RSRS) database contains over 9.5 million stress-resistant SNPs and 797 stress-resistant candidate genes in rice, which were detected from more than 400 stress-resistant rice varieties. We incorporated the SNPs function, genome annotation and phenotype information into this database. Besides, the database has a user-friendly web interface for users to query, browse and visualize a specific SNP efficiently. RSRS database allows users to query the SNP information and their relevant annotations for individual variety or more varieties. The search results can be visualized graphically in a genome browser or displayed in formatted tables. Users can also align SNPs between two or more rice accessions. CONCLUSION:RSRS database shows great utility for scientists to further characterize the function of variants related to environmental stress-resistant ability in rice
- …