In vitro suppression of pathogenic fungi by Streptomyces spp.

The use of living organisms or natural enemies of pathogens to control their populations is called biological disease control. It involves harnessing and introduction of exotic species of microorganism in a natural form, with the intention of controlling pathogens that may exist naturally in the same ecosystem. Prospects for biological control of Aspergillus flavus , Fusarium oxysporum and Penicillium italicum were investigated using Streptomyces spp. isolated from Chinhoyi University of Technology Farm soils in Mashonaland West, Zimbabwe. Twenty seven Streptomyces spp were obtained from the soil, and screened for antimicrobial activity and antagonism in in vitro pathogen inhibition assays, replicated thrice. Although majority of the isolates tested elicited no effect on test pathogens, 22% of the Streptomyces isolates were able to effectively suppress A. flavus, F. oxysporum and P. italicum by at least 55%. There was a significant interaction between Streptomyces isolates and pathogen (A. flavus, F. oxysporum and P. italicum) (P<0.05) on fungal radial growth at days 7, 10 and 14 after pathogen-Streptomyces incubation. Antimicrobial potential against individual and multiple test pathogens was observed, with CUT-Streptomyces 4, CUT-Streptomyces 10, CUT-Streptomyces 11, CUT-Streptomyces 20 and CUT-Streptomyces 23 showing the greatest antimicrobial activity. CUT-Streptomyces isolates have the potential to suppress A. flavus, F. oxysporum and P. italicum in vitro.L\u2019utilisation d\u2019organismes vivants ou d\u2019ennemis naturels d\u2019agents pathog\ue8nes pour contr\uf4ler leurs populations est appel\ue9e contr\uf4le biologique des maladies. Il s\u2019agit d\u2019exploiter et d\u2019introduire des esp\ue8ces exotiques de microorganismes sous une forme naturelle, dans le but de contr\uf4ler les agents pathog\ue8nes pouvant exister naturellement dans le m\ueame \ue9cosyst\ue8me. Les perspectives de lutte biologique contre Aspergillus flavus , Fusarium oxysporum et Penicillium italicum ont \ue9t\ue9 \ue9tudi\ue9es \ue0 l\u2019aide de Streptomyces spp. isol\ue9es des sols agricoles de l\u2019Universit\ue9 de Technologie de Chinhoyi \ue0 Mashonaland West, Zimbabwe. Vingt-sept Streptomyces spp ont \ue9t\ue9 obtenus du sol et cribl\ue9s pour l\u2019activit\ue9 antimicrobienne et l\u2019antagonisme dans des tests d\u2019inhibition des agents pathog\ue8nes in vitro, r\ue9pliqu\ue9s trois fois. Bien que la majorit\ue9 des isolats test\ue9s ne provoquent aucun effet sur les agents pathog\ue8nes test\ue9s, 22% des isolats de Streptomyces sont capables de supprimer efficacement au moins 55% des A. flavus, F. oxysporum et P. italicum. Il y avait une interaction significative entre les isolats de Streptomyces et l\u2019agent pathog\ue8ne (A. flavus, F. oxysporum et P. italicum) (P< 0.05) lors de la croissance radiale des champignons aux 7\ue8me, 10\ue8me et 14\ue8me jours apr\ue8s l\u2019incubation de l\u2019agent pathog\ue8ne-Streptomyces. Un potentiel antimicrobien contre des agents pathog\ue8nes individuels et multiples a \ue9t\ue9 observ\ue9. CUT-Streptomyces 4, CUT-Streptomyces 10, CUT-Streptomyces 11, CUT-Streptomyces 20 et CUT-Streptomyces 23 ont montr\ue9 l\u2019activit\ue9 antimicrobienne la plus \ue9lev\ue9e. Les isolats de CUT-Streptomyces ont le potentiel de supprimer A. flavus, F. oxysporum et P. italicum in vitro

Morphological and molecular characterisation of Streptomyces spp. which suppress pathogenic fungi

Streptomyces species are aerobes and chemoorganotrophic bacteria. These microorganisms produce a wide range of industrially significant compounds, specifically antibiotics and anti fungal substances. The objective of this study was to characterise soil-borne Streptomyces isolates using morphological and molecular traits in order to identify them to species level, and leverage from their potential to suppress the growth of Aspergillus flavus , Fusarium oxysporum and Penicillium italicum . Twenty-seven soil-borne putative Streptomyces, which elicited comprehensive\ua0antimicrobial activity against Aspergillus flavus, Fusarium oxysporum and Penicillium italicum, in a previous study, were evaluated. On the basis of morphology, the bacteria resembled the genus Streptomyces. Initially, colonies phenotypically appeared to have a relatively smooth surface but as growth progressed the bacteria developed a weft of aerial mycelium granular, powdery or velvety in appearance. Bacteria produced a wide variety of pigments which in turn were responsible for the colour of the vegetative and aerial mycelia, colour ranged from white to cream or buff shades and yellow to orange or brown. Microscopic analyses and morphological characteristics generated sub-groups of the isolates and clustered them according to their similarities. One bacterial strain was randomly selected from each cluster and investigated using molecular characteristics. Partial 16S rDNAs from the selected representative isolates from each subgroup, were sequenced and phylogenetic analysis performed. The 16S\ua0rDNA\ua0sequences of the isolates indicated that they were related to\ua0 Streptomyces species: S. bungoensis , S. thermocarboxydus , S. corchorusii and S. lasaliensis, that are known secondary metabolite producers possessing antimicrobial activity against plant pathogens.Les esp\ue8ces de Streptomyces sont des bact\ue9ries a\ue9robies et chimio-organotrophes. Ces micro-organismes produisent une large gamme de compos\ue9s d\u2019importance industrielle, en particulier des antibiotiques et des substances antifongiques. L\u2019objectif de cette \ue9tude \ue9tait de caract\ue9riser les isolats de Streptomyces transmis par le sol \ue0 l\u2019aide de traits morphologiques et mol\ue9culaires afin de les identifier au niveau de l\u2019esp\ue8ce, et de tirer parti de leur potentiel \ue0 supprimer la croissance d\u2019 Aspergillus flavus , Fusarium oxysporum et Penicillium italicum . Vingt-sept Streptomyces putatifs transmis par le sol, qui ont suscit\ue9 une activit\ue9 antimicrobienne compl\ue8te contre Aspergillus flavus, Fusarium oxysporum et Penicillium italicum, dans une \ue9tude pr\ue9c\ue9dente, ont \ue9t\ue9 \ue9valu\ue9s. Sur la base de la morphologie, les bact\ue9ries ressemblaient au genre Streptomyces. Au d\ue9part, les colonies semblaient ph\ue9notypiquement avoir une surface relativement lisse, mais au fur et \ue0 mesure que la croissance progressait, les bact\ue9ries d\ue9veloppaient une trame de myc\ue9lium a\ue9rien d\u2019aspect granuleux, poudreux ou velout\ue9. Les bact\ue9ries produisaient une grande vari\ue9t\ue9 de pigments qui \ue0 leur tour \ue9taient responsables de la couleur des myc\ue9liums v\ue9g\ue9tatifs et a\ue9riens, la couleur variait du blanc au cr\ue8me ou au chamois et du jaune \ue0 l\u2019orange ou au brun. Des analyses microscopiques et des caract\ue9ristiques morphologiques ont g\ue9n\ue9r\ue9 des sous-groupes d\u2019isolats et les ont regroup\ue9s en fonction de leurs similitudes. Une souche bact\ue9rienne a \ue9t\ue9 s\ue9lectionn\ue9e au hasard dans chaque groupe et \ue9tudi\ue9e en utilisant des caract\ue9ristiques mol\ue9culaires. Des ADNr 16S partiels provenant des isolats repr\ue9sentatifs s\ue9lectionn\ue9s de chaque sous-groupe ont \ue9t\ue9 s\ue9quenc\ue9s et une analyse phylog\ue9n\ue9tique a \ue9t\ue9 effectu\ue9e. Les s\ue9quences d\u2019ADNr 16S des isolats ont indiqu\ue9 qu\u2019ils \ue9taient apparent\ue9s aux esp\ue8ces de Streptomyces: S. bungoensis , S. thermocarboxydus , S. corchorusii et S. lasaliensis, qui sont des producteurs de m\ue9tabolites secondaires connus poss\ue9dant une activit\ue9 antimicrobienne contre les phytopathog\ue8nes

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Structure–Property Relationships for a Series of Poly(ester amide)s Containing Amino Acids

Poly­(ester amide)­s (PEAs) composed of variable diols, dicarboxylic acids, and α-amino acids were synthesized and characterized to elucidate structure–property relationships. The PEAs were synthesized using both solution and interfacial approaches to obtain varying molecular weights (MWs) and polydispersities. Studies using differential scanning calorimetry and powder X-ray diffraction revealed a range of amorphous and semicrystalline behavior that was dependent on structure. The viscosities of the PEAs as a function of temperature were studied by rheology, and phase transitions were confirmed for some polymers. Mechanical properties were also investigated, and it was found that the PEAs could be tuned to exhibit elastomeric or brittle behavior by varying both the length of the diol and the amino acid moiety. This information provides new insights into the effects of PEA structure, MW, and MW distribution on PEA properties and will aid in the design and selection of PEAs with optimal properties for targeted applications

Shadow Europe: Alternative European Financial Geographies

This paper sets out to trace some major points of convergence between an emerging literature on the political geographies of corruption-super-1 and current attempts to develop a renewed research agenda in the geographies of global finance-in this case in a specifically European context. In particular, we offer some preliminary observations on the need to elaborate an alternative geography of Europe's financial architecture that could incorporate the role of flows of illegal and informal finance as major driving forces behind the way in which that architecture currently constitutes itself. This is an inherently complex task due to the intrinsically hidden nature of these flows and the difficulties involved in their accurate measurement; nevertheless, they are too important to be ignored, as is too frequently the case at present. In the paper we offer some necessarily preliminary, and deliberately provocative, reflections on how to take forward such a re-conceptualisation. Ultimately, our analysis revolves around the identification of an uneasy tension between the demand for deregulated financial markets and the increasing integration of those markets, and the international momentum towards finding ways of dealing with the (apparently) ever-increasing problems of corruption, money laundering, and the financing of terrorism through new forms of financial regulation and control. Copyright 2007 Blackwell Publishing.

Structure-property relationships for a series of poly(ester amide)s containing amino acids

Poly(ester amide)s (PEAs) composed of variable diols, dicarboxylic acids, and α-amino acids were synthesized and characterized to elucidate structure-property relationships. The PEAs were synthesized using both solution and interfacial approaches to obtain varying molecular weights (MWs) and polydispersities. Studies using differential scanning calorimetry and powder X-ray diffraction revealed a range of amorphous and semicrystalline behavior that was dependent on structure. The viscosities of the PEAs as a function of temperature were studied by rheology, and phase transitions were confirmed for some polymers. Mechanical properties were also investigated, and it was found that the PEAs could be tuned to exhibit elastomeric or brittle behavior by varying both the length of the diol and the amino acid moiety. This information provides new insights into the effects of PEA structure, MW, and MW distribution on PEA properties and will aid in the design and selection of PEAs with optimal properties for targeted applications. © 2013 American Chemical Society