Characterization of actinomycetes antagonistic to Phytophthora fragariae var. rubi, the causal agent of raspberry root rot

Onze souches d'actinomycetes ayant la capacité de protéger les plants de framboisiers (Rubus strigosus) contre les infections causées par les Phytophthora ont été caractérisées. Il a été montré que toutes les souches appartenaient au genre Streptomyces. Deux souches (EF-34 et EF-76) croissaient à 4, 15 et 30°C sur un milieu V8 agar dont le pH avait été ajusté entre 5 et 9. Sept souches dont EF-34 et EF-76 pouvaient hydrolyser les parois cellulaires de Phytophthora et inhiber la croissance du champignon à 15°C et à des pH variant entre 5 et 9. Toutes les souches inhibaient la croissance du P. fragariae var. rubi et du Pythium ultimum. La croissance d'autres espèces fongiques et de bactéries à Gram négatif n'était inhibée qu'en présence de trois souches (EF-14, EF-72 et EF-76). Les onze actinomycetes antagonistes ont été classés en quatre groupes selon leur résistance à divers pesticides utilisés pour protéger les cultures de framboisiers. La souche EF-76 a été caractérisée plus en détail. Cette souche a été identifiée comme étant le Streptomyces hygroscopicus var. geldanus, et produisait l'antibiotique geldanamycine.Eleven actinomycete strains that were previously shown to protect raspberry (Rubus strigosus) plants against Phytophthora infection were characterized. all were shown to belong to the genus Streptomyces. Two strains (EF-34 and EF-76) grew at 4, 15 and 30°C on V8 agar between pHs 5 to 9. Seven strains including EF-34 and EF-76 had both the ability to hydrolyze Phytophthora cell walls and to inhibit Phytophthora growth at 15°C between pHs 5 to 9. all actinomycetes inhibited the growth of P. fragariaevar. rubi and of Pythium ultimum. The growth of other fungal species and of Gram-negative bacteria was inhibited only in the presence of three strains (EF-14, EF-72, and EF-76). The eleven antagonistic actinomycetes were classified into four groups with regard to their resistance to various pesticides used to protect raspberry crops. Strain EF-76 was further characterized. This strain was identified as Streptomyceshygroscopicus var. geldanus, and it was shown to produce geldanamycin, a known antibiotic

Which executive functioning deficits are associated with AD/HD, ODD/CD and comorbid AD/HD+ODD/CD?

Item does not contain fulltextThis study investigated (1) whether attention deficit/hyperactivity disorder (AD/HD) is associated with executive functioning (EF) deficits while controlling for oppositional defiant disorder/conduct disorder (ODD/CD), (2) whether ODD/CD is associated with EF deficits while controlling for AD/HD, and (3)~whether a combination of AD/HD and ODD/CD is associated with EF deficits (and the possibility that there is no association between EF deficits and AD/HD or ODD/CD in isolation). Subjects were 99~children ages 6–12 years. Three putative domains of EF were investigated using well-validated tests: verbal fluency, working memory, and planning. Independent of ODD/CD, AD/HD was associated with deficits in planning and working memory, but not in verbal fluency. Only teacher rated AD/HD, but not parent rated AD/HD, significantly contributed to the prediction of EF task performance. No EF deficits were associated with ODD/CD. The presence of comorbid AD/HD accounts for the EF deficits in children with comorbid AD/HD+ODD/CD. These results suggest that EF deficits are unique to AD/HD and support the model proposed by R. A. Barkley (1997).17 p

Winter soil respiration in a humid temperate forest: The roles of moisture, temperature, and snowpack

Winter soil respiration at midlatitudes can comprise a substantial portion of annual ecosystem carbon loss. However, winter soil carbon dynamics in these areas, which are often characterized by shallow snow cover, are poorly understood due to infrequent sampling at the soil surface. Our objectives were to continuously measure winter CO2 flux from soils and the overlying snowpack while also monitoring drivers of winter soil respiration in a humid temperate forest. We show that the relative roles of soil temperature and moisture in driving winter CO2 flux differed within a single soil-to-snow profile. Surface soil temperatures had a strong, positive influence on CO2 flux from the snowpack, while soil moisture exerted a negative control on soil CO2 flux within the soil profile. Rapid fluctuations in snow depth throughout the winter likely created the dynamic soil temperature and moisture conditions that drove divergent patterns in soil respiration at different depths. Such dynamic conditions differ from many previous studies of winter soil microclimate and respiration, where soil temperature and moisture are relatively stable until snowmelt. The differential response of soil respiration to temperature and moisture across depths was also a unique finding as previous work has not simultaneously quantified CO2 flux from soils and the snowpack. The complex interplay we observed among snow depth, soil temperature, soil moisture, and CO2 flux suggests that winter soil respiration in areas with shallow seasonal snow cover is more variable than previously understood and may fluctuate considerably in the future given winter climate change

Executive functions in preschool children with aggressive behavior: impairments in inhibitory control

The question whether executive function (EF) deficits in children are associated with conduct problems remains controversial. Although the origins of aggressive behavior are to be found in early childhood, findings from EF studies in preschool children with aggressive behavior are inconsistent. The current study aimed to investigate whether preschool children with aggressive behavior show impairments in EF. From a population-based sample, 82 preschool children who were showing aggressive behavior as indicated by scores at or above the 93rd percentile on the Aggressive Behavior Scale of the CBCL 1 1/2-5 were selected. These children with aggressive behavior were matched on IQ to a group of typically developing control children (N=99). Six neuropsychological tasks were administered to assess set shifting, inhibition, working memory and verbal fluency. A factor analysis was conducted which yielded one clear factor: inhibition. Aggressive preschool children showed poorer performance on this inhibition factor than control children and boys performed worse on this factor than girls. This association between aggressive behavior and inhibition deficits was maintained after controlling for attention problems. In addition, gender differences in all EFs measured were found with boys exhibiting more impairment in EF than girls. These findings demonstrate that preschool children with aggressive behavior show impairments in inhibition, irrespective of attention problems

The Arctic freshwater system : changes and impacts

Author Posting. © American Geophysical Union, 2007. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 112 (2007): G04S54, doi:10.1029/2006JG000353.Dramatic changes have been observed in the Arctic over the last century. Many of these involve the storage and cycling of fresh water. On land, precipitation and river discharge, lake abundance and size, glacier area and volume, soil moisture, and a variety of permafrost characteristics have changed. In the ocean, sea ice thickness and areal coverage have decreased and water mass circulation patterns have shifted, changing freshwater pathways and sea ice cover dynamics. Precipitation onto the ocean surface has also changed. Such changes are expected to continue, and perhaps accelerate, in the coming century, enhanced by complex feedbacks between the oceanic, atmospheric, and terrestrial freshwater systems. Change to the arctic freshwater system heralds changes for our global physical and ecological environment as well as human activities in the Arctic. In this paper we review observed changes in the arctic freshwater system over the last century in terrestrial, atmospheric, and oceanic systems.The authors gratefully acknowledge the National Science Foundation (NSF) for funding this synthesis work. This paper is principally the work of authors funded under the NSF-funded Freshwater Integration (FWI) study

Comparative ICE Genomics: Insights into the Evolution of the SXT/R391 Family of ICEs

Integrating and conjugative elements (ICEs) are one of the three principal types of self-transmissible mobile genetic elements in bacteria. ICEs, like plasmids, transfer via conjugation; but unlike plasmids and similar to many phages, these elements integrate into and replicate along with the host chromosome. Members of the SXT/R391 family of ICEs have been isolated from several species of gram-negative bacteria, including Vibrio cholerae, the cause of cholera, where they have been important vectors for disseminating genes conferring resistance to antibiotics. Here we developed a plasmid-based system to capture and isolate SXT/R391 ICEs for sequencing. Comparative analyses of the genomes of 13 SXT/R391 ICEs derived from diverse hosts and locations revealed that they contain 52 perfectly syntenic and nearly identical core genes that serve as a scaffold capable of mobilizing an array of variable DNA. Furthermore, selection pressure to maintain ICE mobility appears to have restricted insertions of variable DNA into intergenic sites that do not interrupt core functions. The variable genes confer diverse element-specific phenotypes, such as resistance to antibiotics. Functional analysis of a set of deletion mutants revealed that less than half of the conserved core genes are required for ICE mobility; the functions of most of the dispensable core genes are unknown. Several lines of evidence suggest that there has been extensive recombination between SXT/R391 ICEs, resulting in re-assortment of their respective variable gene content. Furthermore, our analyses suggest that there may be a network of phylogenetic relationships among sequences found in all types of mobile genetic elements

Re-evaluation of blood mercury, lead and cadmium concentrations in the Inuit population of Nunavik (Québec): a cross-sectional study

<p>Abstract</p> <p>Background</p> <p>Arctic populations are exposed to mercury, lead and cadmium through their traditional diet. Studies have however shown that cadmium exposure is most often attributable to tobacco smoking. The aim of this study is to examine the trends in mercury, lead and cadmium exposure between 1992 and 2004 in the Inuit population of Nunavik (Northern Québec, Canada) using the data obtained from two broad scale health surveys, and to identify sources of exposure in 2004.</p> <p>Methods</p> <p>In 2004, 917 adults aged between 18 and 74 were recruited in the 14 communities of Nunavik to participate to a broad scale health survey. Blood samples were collected and analysed for metals by inductively coupled plasma mass spectrometry, and dietary and life-style characteristics were documented by questionnaires. Results were compared with data obtained in 1992, where 492 people were recruited for a similar survey in the same population.</p> <p>Results</p> <p>Mean blood concentration of mercury was 51.2 nmol/L, which represent a 32% decrease (p < 0.001) between 1992 and 2004. Mercury blood concentrations were mainly explained by age (partial r²= 0.20; p < 0.0001), and the most important source of exposure to mercury was marine mammal meat consumption (partial r²= 0.04; p < 0.0001). In 2004, mean blood concentration of lead was 0.19 μmol/L and showed a 55% decrease since 1992. No strong associations were observed with any dietary source, and lead concentrations were mainly explained by age (partial r²= 0.20.; p < 0.001). Blood cadmium concentrations showed a 22% decrease (p < 0.001) between 1992 and 2004. Once stratified according to tobacco use, means varied between 5.3 nmol/L in never-smokers and 40.4 nmol/L in smokers. Blood cadmium concentrations were mainly associated with tobacco smoking (partial r²= 0.56; p < 0.0001), while consumption of caribou liver and kidney remain a minor source of cadmium exposure among never-smokers.</p> <p>Conclusion</p> <p>Important decreases in mercury, lead and cadmium exposure were observed. Mercury decrease could be explained by dietary changes and the ban of lead cartridges use likely contributed to the decrease in lead exposure. Blood cadmium concentrations remain high and, underscoring the need for intensive tobacco smoking prevention campaigns in the Nunavik population.</p